Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12- 21] 3,253 sequences; 60,403,714 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq5 158 3e-33 seq15 127 4e-24 >seq5 Length=1316942 Score = 158 bits (174), Expect = 3e-33 Identities = 629/966 (65%), Gaps = 38/966 (4%) Strand=Plus/Plus Query 248782 CTGGACGGCGCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACG 248841 || ||| |||||||| || | | || || | ||| | | ||| | |||||| || Sbjct 713613 CTCGACTCCGCGATTGTGTATGACCGCGACTTCAACTACCAATACTTCGGTTTCAAGACT 713672 Query 248842 CTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATG 248901 |||||| ||| ||||||||||| ||||| |||||||| || || ||| ||||||||| Sbjct 713673 CTGGAGCGATCTTATCTCCTCAAGATTGACGGCAAGATTGTTGAGCGACCGCAGCACATG 713732 Query 248902 TTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTCGAGACGTAC 248961 | ||||| ||| |||| || || |||||||| ||| | || || ||||| ||| Sbjct 713733 ATCATGCGTGTGTCTGTTGGCATCTGGGGCGATGACATTGAGCGTGTCCTGGAGACCTAC 713792 Query 248962 ACCGGAATG-AGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTA- 249019 | | ||| | | ||| | | || ||||| | || || || |||||||| |||| Sbjct 713793 AACCTCATGTCCAGCAAGCT-GTTTACCCATGCTTCGCCCACCCTTTTCAACGCTGGTAC 713851 Query 249020 CCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACG 249079 || ||| | |||||| || ||||| || ||| |||| | || || |||| | Sbjct 713852 CCCTCAGC-CCCAGCTGTCTTCCTGCTTCCTGGTTGACATGAAGGAGGATAGCATCGAGG 713910 Query 249080 GCATTTATGACACGCTTAAACAGACG---GCGAAGATTTCTAAATTCGCGGGCGGAATCG 249136 | || |||||||| || | ||||| || | ||| || || | || ||||| |||| Sbjct 713911 GTATCTATGACACTCTCA---AGACGTGTGCCATGATCTCCAAGATGGCTGGCGGTATCG 713967 Query 249137 GTCTCTCCGTCTC-CAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATGGGGTC 249195 ||||| || ||| | ||||| || | || || ||||| ||||| || || | Sbjct 713968 GTCTCAACG-CTCACCGTATCCGTGCCACTGGCTCTTACATTGCCGGTACCAACGGTACC 714026 Query 249196 AGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATCAACCAG 249255 | ||| || | ||| | || || ||| | ||| || | | | || ||||| Sbjct 714027 TCCAACGGTGTCATTCCCATGCTCCGTGTCTTCAACAACACTGCTCGATACGTCGACCAG 714086 Query 249256 GCCGGGCGC---CGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATA 249312 | || | ||| ||| | |||||||| || | || |||||||| ||| | Sbjct 714087 GGTGGCAACAAGCGACCGGGTGCTTTCGCCATCTACCTCGAGCCCTGGCACGCGGATGTC 714146 Query 249313 TTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTC 249372 || |||||||||||| || |||||| ||||||| || | | || || || || Sbjct 714147 TTCGAGTTCCTGGACCTGCGCAAGAACCACGGCAAGGAAGAGGTCCGCGCCCGCGATCTT 714206 Query 249373 TTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGG 249432 ||| | ||| ||| || | || | |||||| || || || ||||||||||| Sbjct 714207 TTCCTAGCCCTTTGGATCCCTGATCTCTTCATGAAGCGGGTTGAGAAGAACGGCGATTGG 714266 Query 249433 ACGCTTCTTTCTCCGTCCGACGCCCCGGACCTCATCGATCTAC-ACGGCGCCGACTTCGA 249491 || || | | || ||| ||| | ||| ||| || | |||||| || |||| Sbjct 714267 ACTCTGATGTGCCCCAACGAGTGCCCTGGCCTTGCCGA-CTGCTACGGCGAGGAGTTCG- 714324 Query 249492 CCAAGCC-TATA--AGAAATAC--GAATC----CAACGGCATCGGCAAGACAATCAAGGC 249542 | ||| |||| |||| ||| ||| | ||| || || ||||||| || ||||| Sbjct 714325 --AGGCCTTATACGAGAAGTACGAGAAGCTTGGCAAGGG--TC-GCAAGACCATGAAGGC 714379 Query 249543 TCGGACCCTTTTTGCGAAG--GTGGTGGAGTCCCAGATAGAGACAGGGGGGCCGTATTAT 249600 || || || || | | | | ||| | || | ||||| || || | | || Sbjct 714380 TCAGA--AGTTGTGGTACGCCATCCTCGAGGCTCAAACTGAGACCGGCAACCCCT-TCAT 714436 Query 249601 -TTGTTCAAAGACGCGTGCAACGCCAAGAGTAACCAACGGCATCTTGGTACCATCCGCTC 249659 ||| ||| ||||| |||||| |||||| ||||| | | || || ||||||||| Sbjct 714437 GCTGTACAAGGACGCATGCAACCGCAAGAGCAACCAGAAGAACCTGGGCACCATCCGCAG 714496 Query 249660 GTCAAATCTCTGTGCAGAGGTGATTCAATACTCGTCCAAGGAGGAGATTGCCGTCTGCAA 249719 || || ||||| | ||| | ||| | |||| || || ||| | || ||||| || Sbjct 714497 CTCCAACCTCTGCACTGAGATCATTGAGTACTGTGCCCCTGATGAGGTCGCTGTCTGTAA 714556 Query 249720 CCTGGC 249725 ||| || Sbjct 714557 CCTTGC 714562 >seq15 Length=666898 Score = 127 bits (140), Expect = 4e-24 Identities = 266/399 (67%), Gaps = 22/399 (6%) Strand=Plus/Minus Query 254001 CTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCG 254060 ||||| || |||| ||| |||| || ||||| ||||| ||||| || || |||| ||| Sbjct 460208 CTTCCGCACATGCTCTTCTACGGACCCCCCGGTACAGGAAAGACCTCTACAGTCCTCGCG 460149 Query 254061 CTGGCCCGAACCCTGTTGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGCT 254120 |||| | || | || || | || | | || ||||||||||| |||||| Sbjct 460148 TTGGCAAAAGAGCTCTACGGACCGGAGTTGATTAAAACACGAGTGCTCGAGCTCAACGCT 460089 Query 254121 TCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTCCAAGATGTCG 254180 || ||||| || || | | ||||||| |||||| |||||| ||| || ||| Sbjct 460088 TCCGACGAGCGTGGCATCTCCATCGTCCGAGACAAGGTCAAGAACTTCGCCCGCATGC-- 460031 Query 254181 ATTTCGTCGTTCCAACC--CGGCT------------------GTCCGCCTTTCAAGCTCG 254220 | || | ||| ||| ||||| | ||||| || || || Sbjct 460030 AATTGACCAATCCGACCGCCGGCTACAAAGACAAATACCCCTGCCCGCCATTTAAAATCA 459971 Query 254221 TGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGA 254280 | ||||| |||||||| || |||||||| || |||||| ||||| || |||| | Sbjct 459970 TCATCCTCGACGAGGCCGATTCCATGACGCAAGATGCGCAGAGTGCCCTGCGAAGAACAA 459911 Query 254281 TGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGTGTCGAAGATCA 254340 |||||||| || | | || || || ||| || | |||||||||||| | |||| Sbjct 459910 TGGAGACGTACAGCAAGATCACTCGGTTCTGCTTGATTTGCAACTACGTGACCCGTATCA 459851 Query 254341 TCGCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATTCA 254379 ||| |||||| ||| ||| ||| |||||||||||||| Sbjct 459850 TCGACCCGCTCGCTAGTCGATGCAGCAAGTTTCGATTCA 459812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073721646423104