Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12-
21] 3,253 sequences; 60,403,714 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq19 129 5e-25
seq8 107 2e-18
seq3070 86.0 5e-12
seq1388 84.2 2e-11
seq15 84.2 2e-11
>seq19
Length=502728
Score = 129 bits (142), Expect = 5e-25
Identities = 158/216 (73%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||||||| || |||||||||||||| |||||||||||| |||| ||| | || ||
Sbjct 172592 ACCAAGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCATCCTCG 172651
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || || || || || | ||||| ||||| || || | ||||||||||||
Sbjct 172652 AGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGG 172711
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | |||| | ||||||||| | ||| ||||||||
Sbjct 172712 ATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTC 172771
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCCT 45343
||||| || ||||| || ||||| ||||| ||||||
Sbjct 172772 CCCGTGAGGGTCTTGACGAAGATCTGCATCTTGCCT 172807
>seq8
Length=1068389
Score = 107 bits (118), Expect = 2e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||| ||| || || ||||||||| |||||||| ||| |||| |||| | || |||
Sbjct 632046 ACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCATCCTCC 631987
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || || || || || | ||||| |||||||| || | |||||||||||| |
Sbjct 631986 AGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGA 631927
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | | || | ||| ||||| | || ||||||||
Sbjct 631926 ATCTTCGACTTCACATTGTCGATGGTATCGCTGGACTCGACCTCAAGAGTGATCGTCTTT 631867
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| ||||| |||||||| ||||| |||||
Sbjct 631866 CCGGTCAGGGTCTTCACGAAGATCTGCAT 631838
>seq3070
Length=537
Score = 86.0 bits (94), Expect = 5e-12
Identities = 139/198 (70%), Gaps = 4/198 (2%)
Strand=Plus/Minus
Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204
|||||||||||||||||||||| ||| ||| || || |||||||| ||||| || ||
Sbjct 216 CTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGGTCATCCTCCAGTTGCTTTCCCGCAAA 157
Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAAC--C 45262
|| | ||||| || || ||||| | || ||||||||| ||| || ||| ||
Sbjct 156 GATGAGGCGCTGCTGATCCGGAGGAATTCCTTCCTTGTCCTGAATCTTGGTCTTCACATT 97
Query 45263 GCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTC 45322
|| | | ||| || ||| || || | || || ||||| || || || || ||
Sbjct 96 GCTG--ATGCTATCGGATGACTCTACTTCGAGAGTGATAGTCTTTCCGGTTAGCGTTTTG 39
Query 45323 ACAAAGATTTGCATGTTG 45340
|| ||||| ||||| |||
Sbjct 38 ACGAAGATCTGCATCTTG 21
>seq1388
Length=1638
Score = 84.2 bits (92), Expect = 2e-11
Identities = 141/204 (69%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192
|||||| ||| ||||||||| ||||||||||| || || |||| || || ||
Sbjct 1327 GTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCGTCTTCGAGCTG 1386
Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252
|| || ||||| || | || || ||||| || || | ||| ||||||||| || ||
Sbjct 1387 CTTGCCAGCGAAGATAAGACGTTGCTGGTCCGGGGGAATACCTTCCTTGTCCTGGATCTT 1446
Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312
||| || | | | | |||| | |||||| || | ||||| |||||||| ||
Sbjct 1447 GGTCTTGACATTCTCGATGGTGTCGGAAGACTCCACTTCGAGAGTAATAGTCTTGCCTGT 1506
Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336
| || || |||||||| |||||
Sbjct 1507 TAAGGTTTTAACAAAGATCTGCAT 1530
>seq15
Length=666898
Score = 84.2 bits (92), Expect = 2e-11
Identities = 127/181 (70%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 45147 CCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATA 45206
||||||| |||||||||||| || ||| | || || || || || || ||||| |
Sbjct 143566 CCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGA 143507
Query 45207 TCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCG 45266
||| ||||| ||||| || || | |||||||||||| || || ||| ||
Sbjct 143506 TCAGTCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 143447
Query 45267 CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAA 45326
| | | ||||| ||| ||||| | ||| || ||||||||||| || |||||||| |
Sbjct 143446 CAATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGA 143387
Query 45327 A 45327
|
Sbjct 143386 A 143386
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395059536873313
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |