Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12- 21] 3,253 sequences; 60,403,714 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq19 129 5e-25 seq8 107 2e-18 seq3070 86.0 5e-12 seq1388 84.2 2e-11 seq15 84.2 2e-11 >seq19 Length=502728 Score = 129 bits (142), Expect = 5e-25 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || |||||||||||||| |||||||||||| |||| ||| | || || Sbjct 172592 ACCAAGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCATCCTCG 172651 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || || | ||||| ||||| || || | |||||||||||| Sbjct 172652 AGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGG 172711 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | ||||||||| | ||| |||||||| Sbjct 172712 ATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTC 172771 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCCT 45343 ||||| || ||||| || ||||| ||||| |||||| Sbjct 172772 CCCGTGAGGGTCTTGACGAAGATCTGCATCTTGCCT 172807 >seq8 Length=1068389 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || || ||||||||| |||||||| ||| |||| |||| | || ||| Sbjct 632046 ACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCATCCTCC 631987 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || || | ||||| |||||||| || | |||||||||||| | Sbjct 631986 AGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGA 631927 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | || | ||| ||||| | || |||||||| Sbjct 631926 ATCTTCGACTTCACATTGTCGATGGTATCGCTGGACTCGACCTCAAGAGTGATCGTCTTT 631867 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| |||||||| ||||| ||||| Sbjct 631866 CCGGTCAGGGTCTTCACGAAGATCTGCAT 631838 >seq3070 Length=537 Score = 86.0 bits (94), Expect = 5e-12 Identities = 139/198 (70%), Gaps = 4/198 (2%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 |||||||||||||||||||||| ||| ||| || || |||||||| ||||| || || Sbjct 216 CTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGGTCATCCTCCAGTTGCTTTCCCGCAAA 157 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAAC--C 45262 || | ||||| || || ||||| | || ||||||||| ||| || ||| || Sbjct 156 GATGAGGCGCTGCTGATCCGGAGGAATTCCTTCCTTGTCCTGAATCTTGGTCTTCACATT 97 Query 45263 GCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTC 45322 || | | ||| || ||| || || | || || ||||| || || || || || Sbjct 96 GCTG--ATGCTATCGGATGACTCTACTTCGAGAGTGATAGTCTTTCCGGTTAGCGTTTTG 39 Query 45323 ACAAAGATTTGCATGTTG 45340 || ||||| ||||| ||| Sbjct 38 ACGAAGATCTGCATCTTG 21 >seq1388 Length=1638 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 |||||| ||| ||||||||| ||||||||||| || || |||| || || || Sbjct 1327 GTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCGTCTTCGAGCTG 1386 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || ||||| || | || || ||||| || || | ||| ||||||||| || || Sbjct 1387 CTTGCCAGCGAAGATAAGACGTTGCTGGTCCGGGGGAATACCTTCCTTGTCCTGGATCTT 1446 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | | |||| | |||||| || | ||||| |||||||| || Sbjct 1447 GGTCTTGACATTCTCGATGGTGTCGGAAGACTCCACTTCGAGAGTAATAGTCTTGCCTGT 1506 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 | || || |||||||| ||||| Sbjct 1507 TAAGGTTTTAACAAAGATCTGCAT 1530 >seq15 Length=666898 Score = 84.2 bits (92), Expect = 2e-11 Identities = 127/181 (70%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 45147 CCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATA 45206 ||||||| |||||||||||| || ||| | || || || || || || ||||| | Sbjct 143566 CCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGA 143507 Query 45207 TCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCG 45266 ||| ||||| ||||| || || | |||||||||||| || || ||| || Sbjct 143506 TCAGTCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 143447 Query 45267 CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAA 45326 | | | ||||| ||| ||||| | ||| || ||||||||||| || |||||||| | Sbjct 143446 CAATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGA 143387 Query 45327 A 45327 | Sbjct 143386 A 143386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395059536873313