Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12- 21] 3,253 sequences; 60,403,714 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq5 302 4e-77 seq6 138 1e-27 seq1388 118 9e-22 seq8 105 6e-18 seq19 91.5 1e-13 >seq5 Length=1316942 Score = 302 bits (334), Expect = 4e-77 Identities = 642/951 (68%), Gaps = 8/951 (1%) Strand=Plus/Minus Query 23027 GAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACAT 23086 |||||||| || || || || ||||| || || |||||| | || || || || Sbjct 714565 GAGGCAAGGTTACAGACAGCGACCTCATCAGGGGCACAGTACTCAATGATCTCAGTGCAG 714506 Query 23087 AGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCC 23146 || ||| | || ||||||| || |||||||||| || || ||||| | ||| Sbjct 714505 AGGTTGGAGCTGCGGATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCATGCGTCC 714446 Query 23147 TTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATA 23206 ||||| |||||| | || |||| ||||| || | ||||| ||| || ||||| Sbjct 714445 TTGTACAGCATGAAGGGGTTGCCGGTCTCAGTTTGAGCCTCGAGGATGGCGTACCACAAC 714386 Query 23207 GTCTGAGCGTGAACACGTCGCACGTACCT-GCCTTCTTCCTCGTACTTTTGGTACAACGC 23265 ||||||| | | ||| || ||| ||| | ||||||||| | ||| || || Sbjct 714385 TTCTGAGCCTTCATG-GTCTTGCGACCCTTGCCAAGCTTCTCGTACTTCTCGTATAAGGC 714327 Query 23266 GTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACT 23325 || || || | ||||| |||||||| ||||| || | | | || ||||| ||| | Sbjct 714326 CTCGAACTCCTCGCCGTAGCAGTCGGCAAGGCCAGGGCACTCGTTGGGGCACATCAGAGT 714267 Query 23326 CCACATTGA-GTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGA 23384 ||| || | || || ||||| || |||| || ||||| || ||||| || || || Sbjct 714266 CCA-ATCGCCGTTCTTCTCAACCCGCTTCATGAAGAGATCAGGGATCCAAAGGGCTAGGA 714208 Query 23385 ACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCA 23444 | || ||||||||||| ||||| || |||||| |||||| || |||| || || | Sbjct 714207 AAAGATCGCGGGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGCAGGTCCAGGAACTCGA 714148 Query 23445 ACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGC 23504 | || ||||| ||||| ||||||||||| | ||| || || ||||||| ||| ||||| | Sbjct 714147 AGACATCCGCGTGCCAGGGCTCGAGGTAGATGGCGAAAGCACCCGGTCGCTTGTTGCCAC 714088 Query 23505 CCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGG 23564 |||| |||||||| || || ||||||||| | || | ||||| || | || |||||||| Sbjct 714087 CCTGGTCGACGTATCGAGCAGTGTTGTTGAAGACACGGAGCATGGGAATGACACCGTTGG 714028 Query 23565 ACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAAC 23624 | | ||| || || | || || | || || | |||| ||| || || Sbjct 714027 AGGTACCGTTGGTACCGGCAATGTAAGAGCCAGTGGCACGGATACGGTGAGCGTTGAGAC 713968 Query 23625 CTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCT 23684 | || || || || || || ||||| || || || |||||||| ||||| |||| Sbjct 713967 CGATACCGCCAGCCATCTTGGAGATCATGGCACACGTCTTGAGAGTGTCATAGATACCCT 713908 Query 23685 CGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAG 23744 ||||||| ||||| || | | |||| ||| || ||||||| || | | || ||| Sbjct 713907 CGATGCTATCCTCCTTCATGTCAACCAGGAAGCAGGAAGACAGCTGGGGCTGAGGGGTAC 713848 Query 23745 CGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAA--AGTATCCATTCGACATTAGATTGTA 23802 | || ||| || || || || || |||| || | | | ||||| || ||||| Sbjct 713847 CAGCGTTGAAAAGGGTGGGCGAAGCATGGGTAAACAGCTTGC--TGGACATGAGGTTGTA 713790 Query 23803 CGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCAT 23862 || || | | | |||||||| || || || || | | || ||||| ||||| Sbjct 713789 GGTCTCCAGGACACGCTCAATGTCATCGCCCCAGATGCCAACAGACACACGCATGATCAT 713730 Query 23863 GTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGT 23922 || || |||| ||| || | ||||| ||| |||| ||||| || || | || || Sbjct 713729 GTGCTGCGGTCGCTCAACAATCTTGCCGTCAATCTTGAGGAGATAAGATCGCTCCAGAGT 713670 Query 23923 TTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGA 23973 || || || || || | ||||| ||||| || || | ||| || || || Sbjct 713669 CTTGAAACCGAAGTATTGGTAGTTGAAGTCGCGGTCATACACAATCGCGGA 713619 >seq6 Length=1299473 Score = 138 bits (152), Expect = 1e-27 Identities = 296/440 (67%), Gaps = 18/440 (4%) Strand=Plus/Minus Query 57963 TTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTT 58022 || ||| || | || | || || || || || || ||||| ||||| || |||| Sbjct 1189005 TTTGCCCAGCGCCTGGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGCGGTGCCTTT 1188946 Query 58023 GCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAG 58082 || | || || ||| | ||||| || ||||| ||||| |||||||| || ||||||| Sbjct 1188945 GCTTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGCCTGACCTTCTCCAACGAG 1188886 Query 58083 TTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATT 58142 |||| || || || ||||| || || ||||| || || ||||| | ||||||| Sbjct 1188885 CTGATTTCTCGTGATGAGGGCCTTCACACTGACTTCGCCTGCCTGCTCCACTCTCA---- 1188830 Query 58143 GTCAATAAACCGACGCGGGATCG-------CATCTTGGACATTATCACCGAGGCGGTCGC 58195 || | || | || | | | |||| ||||| ||||| || || ||| | Sbjct 1188829 -TC--TGAAGGGTCGTGCTAGCAAGAAGATCATCGAAGACATCATCACTGATGCCGTCAC 1188773 Query 58196 GATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGA 58255 ||||| || ||||| ||||||| || || || ||| ||||||| |||||| ||| Sbjct 1188772 CATCGAGAAGGAGTTCCTCACCGAGGCTCTGCCCTGCGCCCTGCTCGGCATGAACTCTGA 1188713 Query 58256 TTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACT--GATTGGA 58313 | ||| ||||||||||||| |||||||| | ||| | ||| || | || Sbjct 1188712 CCTCATGAAGCAGTACATTGAGTTCGTTGCCGATCGTCTTCTTGTCGCTCTCGGCAACGA 1188653 Query 58314 GAGCGTCATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGC 58373 || ||| ||||| ||| || || || || || ||| | ||||| |||| ||| Sbjct 1188652 GAAGGTC--TACAAGTCGACCAACCCCTTCGACTTCATGGAGAACATCTCCCTCGGTGGC 1188595 Query 58374 AAGACAAACTTTTTCGAAAA 58393 ||||| ||||| ||||| || Sbjct 1188594 AAGACCAACTTCTTCGAGAA 1188575 >seq1388 Length=1638 Score = 118 bits (130), Expect = 9e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| || || || || || || || | || || ||| | ||| Sbjct 300 ATGCAGATTTTCGTGAAGACCCTTACTGGAAAGACCATTACTCTTGAGGTGGAATCCTCC 241 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | | || | ||||| || ||| | ||| ||||||||| | || || ||||| Sbjct 240 GACACTATTGAGAACGTCAAGACTAAGATTCA-GGATAAGGAAGGCATCCCCCCGGACCA 182 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || ||||| || || ||| | || ||| | ||| | |||||| || Sbjct 181 GCAGCGTCTCATCTTCGCCGGTAAGCAGCTCGAGGACGGTCGCACTCTTTCCGATTACAA 122 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||| || ||||| || |||||||| || || ||| | ||| | || ||| Sbjct 121 CATCCAGAAAGAGTCTACTCTTCACCTTGTGCTTCGTCTGCGTGGTGGT 73 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| || |||||||| || || ||||||||| | || || ||| | || Sbjct 528 ATGCAAATATTCGTGAAAACTCTGACTGGTAAGACGATCACCCTTGAAGTGGAATCCTCG 469 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | || || | ||| |||||||||||| | || || |||||| Sbjct 468 GATACCATTGAGAATGTGAAGACTAAAATTCAGGACAAGGAAGGTATTCCTCCGGACCAG 409 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || |||||||| || ||| | || ||| | || | |||||| ||| Sbjct 408 CAACGTCTCATCTTCGCTGGTAAGCAGCTTGAGGACGGTCGCACCCTCTCCGATTACAAC 349 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || ||||| || ||||||||||| || || Sbjct 348 ATCCAGAAAGAGTCTACTCTTCATCTTGTGCT 317 Score = 111 bits (122), Expect = 1e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| | || || || || ||||| | || ||||| | ||| Sbjct 984 ATGCAGATTTTCGTCAAGACCTTAACCGGAAAGACCATCACTCTTGAAGTTGAGTCCTCC 925 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | |||| | || || || ||| | ||| ||||||||| | || || ||||| Sbjct 924 GACACTATCGAGAACGTGAAGACTAAGATTCA-GGATAAGGAAGGCATCCCCCCGGACCA 866 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || |||||||| || || | || ||| | || || || || || Sbjct 865 GCAGCGTCTCATCTTCGCTGGTAAGCAACTTGAGGACGGTCGCACCCTGTCTGACTACAA 806 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| ||||| ||||| ||||||||||| || || Sbjct 805 CATCCAAAAGGAATCTACTCTTCATCTCGTGCT 773 Score = 98.7 bits (108), Expect = 9e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| | || || || || ||||| | || ||||| | ||| Sbjct 1302 ATGCAGATTTTCGTCAAGACCTTAACCGGAAAGACCATCACTCTTGAAGTTGAGTCCTCC 1243 Query 31253 GACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | |||| |||| | | || | ||| |||||||||||| | || || ||||| Sbjct 1242 GACACTATCGAGAACGTTAAGACCAA-AATTCAGGACAAGGAAGGTATTCCCCCGGACCA 1184 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| || || || ||||||||||| ||| | |||||| | ||| | ||| || || Sbjct 1183 GCAACGACTCATTTTCGCTGGCAAGCAGCTCGAAGACGGTCGCACTCTTTCCGACTACAA 1124 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || || || || || || || || || Sbjct 1123 TATCCAGAAGGAGTCCACCCTGCACCTTGTGCT 1091 Score = 87.8 bits (96), Expect = 2e-12 Identities = 115/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || || || | |||||||| || || || |||| || || | ||| Sbjct 1530 ATGCAGATCTTTGTTAAAACCTTAACAGGCAAGACTATTACTCTCGAAGTGGAGTCTTCC 1471 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| || ||| | |||||||||||| | || || ||||| Sbjct 1470 GACACCATCGAGAATGTCAAGACCAAGA-TCCAGGACAAGGAAGGTATTCCCCCGGACCA 1412 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 ||| ||||| || ||||||||||| ||| | |||||| Sbjct 1411 GCAACGTCTTATCTTCGCTGGCAAGCAGCTCGAAGAC 1375 >seq8 Length=1068389 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||| || || |||||||| | || || || | | Sbjct 631838 ATGCAGATCTTCGTGAAGACCCTGACCGGAAAGACGATCACTCTTGAGGTCGAGTCCAGC 631897 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | || || || || ||||||||| ||| | || ||||||||| Sbjct 631898 GATACCATCGACAATGTGAAGTCGAAGATTCAGGACAAGGAGGGCATTCCCCCCGACCAG 631957 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || || ||||| || ||| |||| || | || |||||||||| ||| Sbjct 631958 CAGCGACTTATCTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACCCTGAGCGATTACAAC 632017 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 || || || || || || ||||| ||||| || | || | |||||| Sbjct 632018 ATCCAGAAGGAGTCTACCCTTCACCTGGTCCTCCGTCTTCGTGGCGGT 632065 >seq19 Length=502728 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| ||||| || || || || ||||||||| | || || || | Sbjct 172803 AAGATGCAGATCTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 172744 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||||| |||| | ||||| | || ||||||||| ||| | || || ||| Sbjct 172743 TCCGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGAC 172684 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||||| || || || ||||| || ||| | || || ||| ||||||| || Sbjct 172683 CAGCAGCGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACTCTGAGCGACTAC 172624 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || ||||| || |||| || Sbjct 172623 AACATCCAGAAGGAGAGCACTCTCCACTTGGTGCT 172589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445748274023760