Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12-
21] 3,253 sequences; 60,403,714 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq5 302 4e-77
seq6 138 1e-27
seq1388 118 9e-22
seq8 105 6e-18
seq19 91.5 1e-13
>seq5
Length=1316942
Score = 302 bits (334), Expect = 4e-77
Identities = 642/951 (68%), Gaps = 8/951 (1%)
Strand=Plus/Minus
Query 23027 GAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACAT 23086
|||||||| || || || || ||||| || || |||||| | || || || ||
Sbjct 714565 GAGGCAAGGTTACAGACAGCGACCTCATCAGGGGCACAGTACTCAATGATCTCAGTGCAG 714506
Query 23087 AGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCC 23146
|| ||| | || ||||||| || |||||||||| || || ||||| | |||
Sbjct 714505 AGGTTGGAGCTGCGGATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCATGCGTCC 714446
Query 23147 TTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATA 23206
||||| |||||| | || |||| ||||| || | ||||| ||| || |||||
Sbjct 714445 TTGTACAGCATGAAGGGGTTGCCGGTCTCAGTTTGAGCCTCGAGGATGGCGTACCACAAC 714386
Query 23207 GTCTGAGCGTGAACACGTCGCACGTACCT-GCCTTCTTCCTCGTACTTTTGGTACAACGC 23265
||||||| | | ||| || ||| ||| | ||||||||| | ||| || ||
Sbjct 714385 TTCTGAGCCTTCATG-GTCTTGCGACCCTTGCCAAGCTTCTCGTACTTCTCGTATAAGGC 714327
Query 23266 GTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACT 23325
|| || || | ||||| |||||||| ||||| || | | | || ||||| ||| |
Sbjct 714326 CTCGAACTCCTCGCCGTAGCAGTCGGCAAGGCCAGGGCACTCGTTGGGGCACATCAGAGT 714267
Query 23326 CCACATTGA-GTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGA 23384
||| || | || || ||||| || |||| || ||||| || ||||| || || ||
Sbjct 714266 CCA-ATCGCCGTTCTTCTCAACCCGCTTCATGAAGAGATCAGGGATCCAAAGGGCTAGGA 714208
Query 23385 ACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCA 23444
| || ||||||||||| ||||| || |||||| |||||| || |||| || || |
Sbjct 714207 AAAGATCGCGGGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGCAGGTCCAGGAACTCGA 714148
Query 23445 ACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGC 23504
| || ||||| ||||| ||||||||||| | ||| || || ||||||| ||| ||||| |
Sbjct 714147 AGACATCCGCGTGCCAGGGCTCGAGGTAGATGGCGAAAGCACCCGGTCGCTTGTTGCCAC 714088
Query 23505 CCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGG 23564
|||| |||||||| || || ||||||||| | || | ||||| || | || ||||||||
Sbjct 714087 CCTGGTCGACGTATCGAGCAGTGTTGTTGAAGACACGGAGCATGGGAATGACACCGTTGG 714028
Query 23565 ACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAAC 23624
| | ||| || || | || || | || || | |||| ||| || ||
Sbjct 714027 AGGTACCGTTGGTACCGGCAATGTAAGAGCCAGTGGCACGGATACGGTGAGCGTTGAGAC 713968
Query 23625 CTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCT 23684
| || || || || || || ||||| || || || |||||||| ||||| ||||
Sbjct 713967 CGATACCGCCAGCCATCTTGGAGATCATGGCACACGTCTTGAGAGTGTCATAGATACCCT 713908
Query 23685 CGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAG 23744
||||||| ||||| || | | |||| ||| || ||||||| || | | || |||
Sbjct 713907 CGATGCTATCCTCCTTCATGTCAACCAGGAAGCAGGAAGACAGCTGGGGCTGAGGGGTAC 713848
Query 23745 CGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAA--AGTATCCATTCGACATTAGATTGTA 23802
| || ||| || || || || || |||| || | | | ||||| || |||||
Sbjct 713847 CAGCGTTGAAAAGGGTGGGCGAAGCATGGGTAAACAGCTTGC--TGGACATGAGGTTGTA 713790
Query 23803 CGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCAT 23862
|| || | | | |||||||| || || || || | | || ||||| |||||
Sbjct 713789 GGTCTCCAGGACACGCTCAATGTCATCGCCCCAGATGCCAACAGACACACGCATGATCAT 713730
Query 23863 GTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGT 23922
|| || |||| ||| || | ||||| ||| |||| ||||| || || | || ||
Sbjct 713729 GTGCTGCGGTCGCTCAACAATCTTGCCGTCAATCTTGAGGAGATAAGATCGCTCCAGAGT 713670
Query 23923 TTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGA 23973
|| || || || || | ||||| ||||| || || | ||| || || ||
Sbjct 713669 CTTGAAACCGAAGTATTGGTAGTTGAAGTCGCGGTCATACACAATCGCGGA 713619
>seq6
Length=1299473
Score = 138 bits (152), Expect = 1e-27
Identities = 296/440 (67%), Gaps = 18/440 (4%)
Strand=Plus/Minus
Query 57963 TTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTT 58022
|| ||| || | || | || || || || || || ||||| ||||| || ||||
Sbjct 1189005 TTTGCCCAGCGCCTGGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGCGGTGCCTTT 1188946
Query 58023 GCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAG 58082
|| | || || ||| | ||||| || ||||| ||||| |||||||| || |||||||
Sbjct 1188945 GCTTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGCCTGACCTTCTCCAACGAG 1188886
Query 58083 TTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATT 58142
|||| || || || ||||| || || ||||| || || ||||| | |||||||
Sbjct 1188885 CTGATTTCTCGTGATGAGGGCCTTCACACTGACTTCGCCTGCCTGCTCCACTCTCA---- 1188830
Query 58143 GTCAATAAACCGACGCGGGATCG-------CATCTTGGACATTATCACCGAGGCGGTCGC 58195
|| | || | || | | | |||| ||||| ||||| || || ||| |
Sbjct 1188829 -TC--TGAAGGGTCGTGCTAGCAAGAAGATCATCGAAGACATCATCACTGATGCCGTCAC 1188773
Query 58196 GATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGA 58255
||||| || ||||| ||||||| || || || ||| ||||||| |||||| |||
Sbjct 1188772 CATCGAGAAGGAGTTCCTCACCGAGGCTCTGCCCTGCGCCCTGCTCGGCATGAACTCTGA 1188713
Query 58256 TTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACT--GATTGGA 58313
| ||| ||||||||||||| |||||||| | ||| | ||| || | ||
Sbjct 1188712 CCTCATGAAGCAGTACATTGAGTTCGTTGCCGATCGTCTTCTTGTCGCTCTCGGCAACGA 1188653
Query 58314 GAGCGTCATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGC 58373
|| ||| ||||| ||| || || || || || ||| | ||||| |||| |||
Sbjct 1188652 GAAGGTC--TACAAGTCGACCAACCCCTTCGACTTCATGGAGAACATCTCCCTCGGTGGC 1188595
Query 58374 AAGACAAACTTTTTCGAAAA 58393
||||| ||||| ||||| ||
Sbjct 1188594 AAGACCAACTTCTTCGAGAA 1188575
>seq1388
Length=1638
Score = 118 bits (130), Expect = 9e-22
Identities = 165/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| |||||||| ||||| || || || || || || || | || || ||| | |||
Sbjct 300 ATGCAGATTTTCGTGAAGACCCTTACTGGAAAGACCATTACTCTTGAGGTGGAATCCTCC 241
Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| | | || | ||||| || ||| | ||| ||||||||| | || || |||||
Sbjct 240 GACACTATTGAGAACGTCAAGACTAAGATTCA-GGATAAGGAAGGCATCCCCCCGGACCA 182
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
||||||||| || ||||| || || ||| | || ||| | ||| | |||||| ||
Sbjct 181 GCAGCGTCTCATCTTCGCCGGTAAGCAGCTCGAGGACGGTCGCACTCTTTCCGATTACAA 122
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420
||| || ||||| || |||||||| || || ||| | ||| | || |||
Sbjct 121 CATCCAGAAAGAGTCTACTCTTCACCTTGTGCTTCGTCTGCGTGGTGGT 73
Score = 113 bits (124), Expect = 4e-20
Identities = 152/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||| ||||| || |||||||| || || ||||||||| | || || ||| | ||
Sbjct 528 ATGCAAATATTCGTGAAAACTCTGACTGGTAAGACGATCACCCTTGAAGTGGAATCCTCG 469
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | | || | || || | ||| |||||||||||| | || || ||||||
Sbjct 468 GATACCATTGAGAATGTGAAGACTAAAATTCAGGACAAGGAAGGTATTCCTCCGGACCAG 409
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|| ||||| || |||||||| || ||| | || ||| | || | |||||| |||
Sbjct 408 CAACGTCTCATCTTCGCTGGTAAGCAGCTTGAGGACGGTCGCACCCTCTCCGATTACAAC 349
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
|| || ||||| || ||||||||||| || ||
Sbjct 348 ATCCAGAAAGAGTCTACTCTTCATCTTGTGCT 317
Score = 111 bits (122), Expect = 1e-19
Identities = 154/213 (72%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| |||||||| ||||| | || || || || ||||| | || ||||| | |||
Sbjct 984 ATGCAGATTTTCGTCAAGACCTTAACCGGAAAGACCATCACTCTTGAAGTTGAGTCCTCC 925
Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| | |||| | || || || ||| | ||| ||||||||| | || || |||||
Sbjct 924 GACACTATCGAGAACGTGAAGACTAAGATTCA-GGATAAGGAAGGCATCCCCCCGGACCA 866
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
||||||||| || |||||||| || || | || ||| | || || || || ||
Sbjct 865 GCAGCGTCTCATCTTCGCTGGTAAGCAACTTGAGGACGGTCGCACCCTGTCTGACTACAA 806
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
||| ||||| ||||| ||||||||||| || ||
Sbjct 805 CATCCAAAAGGAATCTACTCTTCATCTCGTGCT 773
Score = 98.7 bits (108), Expect = 9e-16
Identities = 151/213 (71%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| |||||||| ||||| | || || || || ||||| | || ||||| | |||
Sbjct 1302 ATGCAGATTTTCGTCAAGACCTTAACCGGAAAGACCATCACTCTTGAAGTTGAGTCCTCC 1243
Query 31253 GACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| | |||| |||| | | || | ||| |||||||||||| | || || |||||
Sbjct 1242 GACACTATCGAGAACGTTAAGACCAA-AATTCAGGACAAGGAAGGTATTCCCCCGGACCA 1184
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
||| || || || ||||||||||| ||| | |||||| | ||| | ||| || ||
Sbjct 1183 GCAACGACTCATTTTCGCTGGCAAGCAGCTCGAAGACGGTCGCACTCTTTCCGACTACAA 1124
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
|| || || || || || || || || || ||
Sbjct 1123 TATCCAGAAGGAGTCCACCCTGCACCTTGTGCT 1091
Score = 87.8 bits (96), Expect = 2e-12
Identities = 115/157 (73%), Gaps = 2/157 (1%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || || || || || | |||||||| || || || |||| || || | |||
Sbjct 1530 ATGCAGATCTTTGTTAAAACCTTAACAGGCAAGACTATTACTCTCGAAGTGGAGTCTTCC 1471
Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| |||| | ||||| || ||| | |||||||||||| | || || |||||
Sbjct 1470 GACACCATCGAGAATGTCAAGACCAAGA-TCCAGGACAAGGAAGGTATTCCCCCGGACCA 1412
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348
||| ||||| || ||||||||||| ||| | ||||||
Sbjct 1411 GCAACGTCTTATCTTCGCTGGCAAGCAGCTCGAAGAC 1375
>seq8
Length=1068389
Score = 105 bits (116), Expect = 6e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| ||||| ||||| || || |||||||| | || || || | |
Sbjct 631838 ATGCAGATCTTCGTGAAGACCCTGACCGGAAAGACGATCACTCTTGAGGTCGAGTCCAGC 631897
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | |||| | || || || || ||||||||| ||| | || |||||||||
Sbjct 631898 GATACCATCGACAATGTGAAGTCGAAGATTCAGGACAAGGAGGGCATTCCCCCCGACCAG 631957
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
||||| || || || ||||| || ||| |||| || | || |||||||||| |||
Sbjct 631958 CAGCGACTTATCTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACCCTGAGCGATTACAAC 632017
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420
|| || || || || || ||||| ||||| || | || | ||||||
Sbjct 632018 ATCCAGAAGGAGTCTACCCTTCACCTGGTCCTCCGTCTTCGTGGCGGT 632065
>seq19
Length=502728
Score = 91.5 bits (100), Expect = 1e-13
Identities = 149/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|| ||||| || ||||| ||||| || || || || ||||||||| | || || || |
Sbjct 172803 AAGATGCAGATCTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 172744
Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309
||||||| |||| | ||||| | || ||||||||| ||| | || || |||
Sbjct 172743 TCCGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGAC 172684
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369
|||||||| || || || ||||| || ||| | || || ||| ||||||| ||
Sbjct 172683 CAGCAGCGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACTCTGAGCGACTAC 172624
Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
||||| || || || ||||| || |||| ||
Sbjct 172623 AACATCCAGAAGGAGAGCACTCTCCACTTGGTGCT 172589
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445748274023760
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