Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12- 21] 3,253 sequences; 60,403,714 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq5 152 1e-31 seq6 116 7e-21 >seq5 Length=1316942 Score = 152 bits (168), Expect = 1e-31 Identities = 423/644 (66%), Gaps = 16/644 (2%) Strand=Plus/Minus Query 94407 CTCATATTTCTCGTACAACGCCTTAAACTCTTCGCCATGGACGTCGGAAAGGCCAGGGCA 94466 ||| || |||||||| || |||| ||||| ||||| | | ||||| |||||||||||| Sbjct 714347 CTCGTACTTCTCGTATAAGGCCTCGAACTCCTCGCCGTAGCAGTCGGCAAGGCCAGGGCA 714288 Query 94467 CTCGTGGGGGCACATCAGGGACCAAT------TCTTCCCAGCCTTCACTCTCTCCATGAA 94520 ||||| |||||||||||| | ||||| ||||| || || | || |||||| Sbjct 714287 CTCGTTGGGGCACATCAGAGTCCAATCGCCGTTCTTCTCAACC------CGCTTCATGAA 714234 Query 94521 GAGATCAGATACCCAGATAGCTGGGAAAAGATCCCTCGTCCTCAAATCTTCATTACCGGC 94580 |||||||| | ||| | ||| |||||||||| | | | | ||||| || ||| Sbjct 714233 GAGATCAGGGATCCAAAGGGCTAGGAAAAGATCGCGGGCGCGGACCTCTTCCTTGCCGTG 714174 Query 94581 ATTCTTTCTGCAG-TCAATAAAGTCCTTCACGTCCAGATGCCAATCAGAAATATAGATGG 94639 ||||| | |||| || | || || || ||| ||||| | ||||||| Sbjct 714173 GTTCTTGC-GCAGGTCCAGGAACTCGAAGACATCCGCGTGCCAGGGCTCGAGGTAGATGG 714115 Query 94640 CTGCAGCTCCTCTCCTCTTGTCTCCTCCCTGGCTAACCTTTTTCACAGAGACGTTAAAGA 94699 | ||| || | ||||| || |||||| || | | ||| | ||| |||| Sbjct 714114 CGAAAGCACCCGGTCGCTTGTTGCCACCCTGGTCGACGTATCGAGCAGTGTTGTTGAAGA 714055 Query 94700 TTTGGAGGAACGCCATGAGACCAGGGTGGGTACCACTCCATGACGAAATGGGGCTTCCTT 94759 |||| | | |||| ||| | |||||| | | |||| || Sbjct 714054 CACGGAGCATGGGAATGACACCGTTGGAGGTACCGTTGGTACCGGCAATGTAAGAGCCAG 713995 Query 94760 TTGCCCTCAAATCATGAAAGTGGATGCCGAGTCCTCCAGCAGTCTTGGAGATGATTGCCG 94819 | || | | | ||| || || |||| || ||||| |||||||||| || || Sbjct 713994 TGGCACGGATACGGTGAGCGTTGAGACCGATACCGCCAGCCATCTTGGAGATCATGGCAC 713935 Query 94820 CCTCCTTAAGAGTATCATAAATACCCTCAATGCTATCATCTTGAAGGCCCAGAAGGAAGC 94879 | ||| ||||| ||||| |||||||| |||||||| || | | | | | ||||||| Sbjct 713934 ACGTCTTGAGAGTGTCATAGATACCCTCGATGCTATCCTCCTTCATGTCAACCAGGAAGC 713875 Query 94880 ACGAGGAAAGTTGGGGTGTGACTGTT-CCACAATTAAACAGTGTGGGGGAAGCATGGGTA 94938 | || || || ||||| ||| | | ||| || || || ||||| |||||||||||| Sbjct 713874 AGGAAGACAGCTGGGGC-TGAGGGGTACCAGCGTTGAAAAGGGTGGGCGAAGCATGGGTA 713816 Query 94939 AAATAGTGCCTCGACATGAGATCATATGTTTCAATGACAGATTTGATGTCTGATCCGTGA 94998 || | || |||||||| | || || || | |||| | ||||| || Sbjct 713815 AACAGCTTGCTGGACATGAGGTTGTAGGTCTCCAGGACACGCTCAATGTCATCGCCCCAG 713756 Query 94999 ATGCCGACAGCCACACGCATAATCATGTCCTGAGGGCGCTCAAC 95042 ||||| |||| ||||||||| ||||||| ||| || |||||||| Sbjct 713755 ATGCCAACAGACACACGCATGATCATGTGCTGCGGTCGCTCAAC 713712 >seq6 Length=1299473 Score = 116 bits (128), Expect = 7e-21 Identities = 117/152 (77%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 |||||||||||||| ||||| || |||||||| || ||||| || || ||||| |||||| Sbjct 1188990 GTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGCTTCCATCTTCTGG 1188931 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 ||||||| | || | ||||||| || |||| |||||| ||| | |||||| | || Sbjct 1188930 CTCAAGAAGCGTGGCCTCATGCCTGGCCTGACCTTCTCCAACGAGCTGATTTCTCGTGAT 1188871 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCT 102069 || || ||||| ||||| || ||| |||| Sbjct 1188870 GAGGGCCTTCACACTGACTTCGCCTGCCTGCT 1188839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989542755066615