Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12-
21] 3,253 sequences; 60,403,714 total letters
Query= NC_003225.3
Length=309286
Score E
Sequences producing significant alignments: (Bits) Value
seq5 152 1e-31
seq6 116 7e-21
>seq5
Length=1316942
Score = 152 bits (168), Expect = 1e-31
Identities = 423/644 (66%), Gaps = 16/644 (2%)
Strand=Plus/Minus
Query 94407 CTCATATTTCTCGTACAACGCCTTAAACTCTTCGCCATGGACGTCGGAAAGGCCAGGGCA 94466
||| || |||||||| || |||| ||||| ||||| | | ||||| ||||||||||||
Sbjct 714347 CTCGTACTTCTCGTATAAGGCCTCGAACTCCTCGCCGTAGCAGTCGGCAAGGCCAGGGCA 714288
Query 94467 CTCGTGGGGGCACATCAGGGACCAAT------TCTTCCCAGCCTTCACTCTCTCCATGAA 94520
||||| |||||||||||| | ||||| ||||| || || | || ||||||
Sbjct 714287 CTCGTTGGGGCACATCAGAGTCCAATCGCCGTTCTTCTCAACC------CGCTTCATGAA 714234
Query 94521 GAGATCAGATACCCAGATAGCTGGGAAAAGATCCCTCGTCCTCAAATCTTCATTACCGGC 94580
|||||||| | ||| | ||| |||||||||| | | | | ||||| || |||
Sbjct 714233 GAGATCAGGGATCCAAAGGGCTAGGAAAAGATCGCGGGCGCGGACCTCTTCCTTGCCGTG 714174
Query 94581 ATTCTTTCTGCAG-TCAATAAAGTCCTTCACGTCCAGATGCCAATCAGAAATATAGATGG 94639
||||| | |||| || | || || || ||| ||||| | |||||||
Sbjct 714173 GTTCTTGC-GCAGGTCCAGGAACTCGAAGACATCCGCGTGCCAGGGCTCGAGGTAGATGG 714115
Query 94640 CTGCAGCTCCTCTCCTCTTGTCTCCTCCCTGGCTAACCTTTTTCACAGAGACGTTAAAGA 94699
| ||| || | ||||| || |||||| || | | ||| | ||| ||||
Sbjct 714114 CGAAAGCACCCGGTCGCTTGTTGCCACCCTGGTCGACGTATCGAGCAGTGTTGTTGAAGA 714055
Query 94700 TTTGGAGGAACGCCATGAGACCAGGGTGGGTACCACTCCATGACGAAATGGGGCTTCCTT 94759
|||| | | |||| ||| | |||||| | | |||| ||
Sbjct 714054 CACGGAGCATGGGAATGACACCGTTGGAGGTACCGTTGGTACCGGCAATGTAAGAGCCAG 713995
Query 94760 TTGCCCTCAAATCATGAAAGTGGATGCCGAGTCCTCCAGCAGTCTTGGAGATGATTGCCG 94819
| || | | | ||| || || |||| || ||||| |||||||||| || ||
Sbjct 713994 TGGCACGGATACGGTGAGCGTTGAGACCGATACCGCCAGCCATCTTGGAGATCATGGCAC 713935
Query 94820 CCTCCTTAAGAGTATCATAAATACCCTCAATGCTATCATCTTGAAGGCCCAGAAGGAAGC 94879
| ||| ||||| ||||| |||||||| |||||||| || | | | | | |||||||
Sbjct 713934 ACGTCTTGAGAGTGTCATAGATACCCTCGATGCTATCCTCCTTCATGTCAACCAGGAAGC 713875
Query 94880 ACGAGGAAAGTTGGGGTGTGACTGTT-CCACAATTAAACAGTGTGGGGGAAGCATGGGTA 94938
| || || || ||||| ||| | | ||| || || || ||||| ||||||||||||
Sbjct 713874 AGGAAGACAGCTGGGGC-TGAGGGGTACCAGCGTTGAAAAGGGTGGGCGAAGCATGGGTA 713816
Query 94939 AAATAGTGCCTCGACATGAGATCATATGTTTCAATGACAGATTTGATGTCTGATCCGTGA 94998
|| | || |||||||| | || || || | |||| | ||||| ||
Sbjct 713815 AACAGCTTGCTGGACATGAGGTTGTAGGTCTCCAGGACACGCTCAATGTCATCGCCCCAG 713756
Query 94999 ATGCCGACAGCCACACGCATAATCATGTCCTGAGGGCGCTCAAC 95042
||||| |||| ||||||||| ||||||| ||| || ||||||||
Sbjct 713755 ATGCCAACAGACACACGCATGATCATGTGCTGCGGTCGCTCAAC 713712
>seq6
Length=1299473
Score = 116 bits (128), Expect = 7e-21
Identities = 117/152 (77%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977
|||||||||||||| ||||| || |||||||| || ||||| || || ||||| ||||||
Sbjct 1188990 GTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGCTTCCATCTTCTGG 1188931
Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037
||||||| | || | ||||||| || |||| |||||| ||| | |||||| | ||
Sbjct 1188930 CTCAAGAAGCGTGGCCTCATGCCTGGCCTGACCTTCTCCAACGAGCTGATTTCTCGTGAT 1188871
Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCT 102069
|| || ||||| ||||| || ||| ||||
Sbjct 1188870 GAGGGCCTTCACACTGACTTCGCCTGCCTGCT 1188839
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 989542755066615
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |