Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12- 21] 3,253 sequences; 60,403,714 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq5 194 2e-44 seq6 95.1 2e-14 >seq5 Length=1316942 Score = 194 bits (214), Expect = 2e-44 Identities = 464/696 (67%), Gaps = 12/696 (2%) Strand=Plus/Minus Query 63221 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 63280 ||| || || | || ||||||| | ||| || |||| | || || || ||||| || Sbjct 714293 AGGGCACTCGTTGGGGCACATCAGAGTCCAATCGCCGTTCTTCTCAACCCGCTTCATGAA 714234 Query 63281 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGT 63340 ||||||||| |||||||| |||| || ||||| | | | || || || || Sbjct 714233 GAGATCAGGGATCCAAAGGGCTAGGAAAAGATCGCGGGCGCGGACCTCTTCCTTGCCGTG 714174 Query 63341 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63400 ||||| || || |||||| | | | ||| | ||||| || || | ||| ||||| Sbjct 714173 GTTCTTGCGCAGGTCCAGGAACTCGAAGACATCCGCGTGCCAGGGCTCGAGGTAGATGGC 714114 Query 63401 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 63460 | | | || || || ||||| || ||||| || | ||||| ||| ||||| || | || Sbjct 714113 GAAAGCACCCGGTCGCTTGTTGCCACCCTGGTCGACGTATCGAGCAGTGTTGTTGAAGAC 714054 Query 63461 TCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACT 63520 | | ||| ||||| | |||||| || |||| |||||||||| || || ||| | Sbjct 714053 ACGGAGCATGGGAATGACACCGTTGGAGGTACCGTTGGTACCGGCAATGTAAGAGCCAGT 713994 Query 63521 GGCACGAATATTACTAATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 63579 |||||| ||| | | | | ||||| || || || ||||| || ||||| | || | Sbjct 713993 GGCACGGATACGG-TGAGCGTTGAGACCGATACCGCCAGCCATCTTGGAGATCATGGCAC 713935 Query 63580 ATCGTTTTAAC-GTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAA 63638 | ||| || | ||||||||||| || || |||||||| || |||||| || || || Sbjct 713934 A-CGTCTTGAGAGTGTCATAGATACCCTCGATGCTATCCTCCTTCATGTCAACCAGGAAG 713876 Query 63639 CAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 63698 ||| ||||| ||| | ||| || || || || || | ||| || ||||| || ||| Sbjct 713875 CAGGAAGACAGCTGGGGCTGAGGGGTACCAGCGTTGAAAAGGGTGGGCGAAGCATGGGTA 713816 Query 63699 AACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC----CCATTG 63754 ||| || || | || ||||| ||||| | | || || || || | Sbjct 713815 AACAGCTTGCTGGACATGAGGTTGTAGGTCTCCAGGACACGCTCAATGTCATCGCCCCAG 713756 Query 63755 ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTT 63814 ||| || || | |||||||| | ||||||||| |||| |||||||| ||| || Sbjct 713755 ATG----CCAACAGACACACGCATGATCATGTGCTGCGGTCGCTCAACAATCTTGCCGTC 713700 Query 63815 TATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 63874 || || | | || ||| |||| ||| || ||||| || || | ||| ||||| Sbjct 713699 AATCTTGAGGAGATAAGATCGCTCCAGAGTCTTGAAACCGAAGTATTGGTAGTTGAAGTC 713640 Query 63875 TCGTTCGTAAATAATAACCGAATTGAGCTTATCCTT 63910 || || || | ||| | || | ||||| ||||| Sbjct 713639 GCGGTCATACACAATCGCGGAGTCGAGCTCCTCCTT 713604 >seq6 Length=1299473 Score = 95.1 bits (104), Expect = 2e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || ||||| || ||| || ||||| || | | ||| | ||||| || || || || Sbjct 1188845 CAGGCGAAGTCAGTGTGAAGGCCCTCATCACGAGAAATCAGCTCGTTGGAGAAGGTCAGG 1188904 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||| ||||||||||| || ||||| || |||||||| || | ||| |||||| Sbjct 1188905 CCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCGCTGAAGAAG 1188964 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAA 33726 || || || || ||||||||||||| Sbjct 1188965 ATACCCTCAACAGCAGCAAAGGCAA 1188989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629791990041840