Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12-
21] 3,253 sequences; 60,403,714 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq5 194 2e-44
seq6 95.1 2e-14
>seq5
Length=1316942
Score = 194 bits (214), Expect = 2e-44
Identities = 464/696 (67%), Gaps = 12/696 (2%)
Strand=Plus/Minus
Query 63221 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 63280
||| || || | || ||||||| | ||| || |||| | || || || ||||| ||
Sbjct 714293 AGGGCACTCGTTGGGGCACATCAGAGTCCAATCGCCGTTCTTCTCAACCCGCTTCATGAA 714234
Query 63281 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGT 63340
||||||||| |||||||| |||| || ||||| | | | || || || ||
Sbjct 714233 GAGATCAGGGATCCAAAGGGCTAGGAAAAGATCGCGGGCGCGGACCTCTTCCTTGCCGTG 714174
Query 63341 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63400
||||| || || |||||| | | | ||| | ||||| || || | ||| |||||
Sbjct 714173 GTTCTTGCGCAGGTCCAGGAACTCGAAGACATCCGCGTGCCAGGGCTCGAGGTAGATGGC 714114
Query 63401 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 63460
| | | || || || ||||| || ||||| || | ||||| ||| ||||| || | ||
Sbjct 714113 GAAAGCACCCGGTCGCTTGTTGCCACCCTGGTCGACGTATCGAGCAGTGTTGTTGAAGAC 714054
Query 63461 TCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACT 63520
| | ||| ||||| | |||||| || |||| |||||||||| || || ||| |
Sbjct 714053 ACGGAGCATGGGAATGACACCGTTGGAGGTACCGTTGGTACCGGCAATGTAAGAGCCAGT 713994
Query 63521 GGCACGAATATTACTAATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 63579
|||||| ||| | | | | ||||| || || || ||||| || ||||| | || |
Sbjct 713993 GGCACGGATACGG-TGAGCGTTGAGACCGATACCGCCAGCCATCTTGGAGATCATGGCAC 713935
Query 63580 ATCGTTTTAAC-GTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAA 63638
| ||| || | ||||||||||| || || |||||||| || |||||| || || ||
Sbjct 713934 A-CGTCTTGAGAGTGTCATAGATACCCTCGATGCTATCCTCCTTCATGTCAACCAGGAAG 713876
Query 63639 CAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 63698
||| ||||| ||| | ||| || || || || || | ||| || ||||| || |||
Sbjct 713875 CAGGAAGACAGCTGGGGCTGAGGGGTACCAGCGTTGAAAAGGGTGGGCGAAGCATGGGTA 713816
Query 63699 AACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC----CCATTG 63754
||| || || | || ||||| ||||| | | || || || || |
Sbjct 713815 AACAGCTTGCTGGACATGAGGTTGTAGGTCTCCAGGACACGCTCAATGTCATCGCCCCAG 713756
Query 63755 ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTT 63814
||| || || | |||||||| | ||||||||| |||| |||||||| ||| ||
Sbjct 713755 ATG----CCAACAGACACACGCATGATCATGTGCTGCGGTCGCTCAACAATCTTGCCGTC 713700
Query 63815 TATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 63874
|| || | | || ||| |||| ||| || ||||| || || | ||| |||||
Sbjct 713699 AATCTTGAGGAGATAAGATCGCTCCAGAGTCTTGAAACCGAAGTATTGGTAGTTGAAGTC 713640
Query 63875 TCGTTCGTAAATAATAACCGAATTGAGCTTATCCTT 63910
|| || || | ||| | || | ||||| |||||
Sbjct 713639 GCGGTCATACACAATCGCGGAGTCGAGCTCCTCCTT 713604
>seq6
Length=1299473
Score = 95.1 bits (104), Expect = 2e-14
Identities = 108/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641
|| ||||| || ||| || ||||| || | | ||| | ||||| || || || ||
Sbjct 1188845 CAGGCGAAGTCAGTGTGAAGGCCCTCATCACGAGAAATCAGCTCGTTGGAGAAGGTCAGG 1188904
Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701
|| ||||| ||||||||||| || ||||| || |||||||| || | ||| ||||||
Sbjct 1188905 CCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCGCTGAAGAAG 1188964
Query 33702 ATTCCTTCTACTGCAGCAAAGGCAA 33726
|| || || || |||||||||||||
Sbjct 1188965 ATACCCTCAACAGCAGCAAAGGCAA 1188989
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629791990041840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |