Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12-
21] 3,253 sequences; 60,403,714 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq5 183 4e-41
seq6 86.0 8e-12
>seq5
Length=1316942
Score = 183 bits (202), Expect = 4e-41
Identities = 463/698 (66%), Gaps = 12/698 (2%)
Strand=Plus/Minus
Query 66012 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 66071
||||| || || | || ||||||| | ||| || |||| | || || || |||||
Sbjct 714295 CCAGGGCACTCGTTGGGGCACATCAGAGTCCAATCGCCGTTCTTCTCAACCCGCTTCATG 714236
Query 66072 AAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCT 66131
||||||||||| |||||||| |||| || | ||| | || | || || || ||
Sbjct 714235 AAGAGATCAGGGATCCAAAGGGCTAGGAAAAGATCGCGGGCGCGGACCTCTTCCTTGCCG 714176
Query 66132 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATG 66191
||||| || || |||||| | | | ||| ||||| || || | ||| |||
Sbjct 714175 TGGTTCTTGCGCAGGTCCAGGAACTCGAAGACATCCGCGTGCCAGGGCTCGAGGTAGATG 714116
Query 66192 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 66251
|| | | | || || || ||||| || ||||| || | ||||| ||| ||||| || |
Sbjct 714115 GCGAAAGCACCCGGTCGCTTGTTGCCACCCTGGTCGACGTATCGAGCAGTGTTGTTGAAG 714056
Query 66252 ACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCA 66311
|| | | ||| ||||| | ||| ||||| ||||| ||||| |||| || || |||
Sbjct 714055 ACACGGAGCATGGGAATGACACCGTTGGAGGTACCGTTGGTACCGGCAATGTAAGAGCCA 713996
Query 66312 CTTGCACGAATATTACTAATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGC 66370
| ||||| ||| | | | | ||||| || || || ||||| || ||||| | ||
Sbjct 713995 GTGGCACGGATA-CGGTGAGCGTTGAGACCGATACCGCCAGCCATCTTGGAGATCATGGC 713937
Query 66371 GCATCGT-TTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 66429
|| ||| || | || |||||||| ||||| || ||||| ||| |||||| || || |
Sbjct 713936 ACA-CGTCTTGAGAGTGTCATAGATACCCTCGATGCTATCCTCCTTCATGTCAACCAGGA 713878
Query 66430 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 66489
| ||| ||||| ||| | || || || || || || | ||| || ||||| || |
Sbjct 713877 AGCAGGAAGACAGCTGGGGCTGAGGGGTACCAGCGTTGAAAAGGGTGGGCGAAGCATGGG 713818
Query 66490 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC----CCAT 66545
||||| || || | || ||||| ||||| | | || || || ||
Sbjct 713817 TAAACAGCTTGCTGGACATGAGGTTGTAGGTCTCCAGGACACGCTCAATGTCATCGCCCC 713758
Query 66546 TGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTG 66605
|||| || || | |||||||| | ||||||||| |||| ||||| |||||| |
Sbjct 713757 AGATG----CCAACAGACACACGCATGATCATGTGCTGCGGTCGCTCAACAATCTTGCCG 713702
Query 66606 TTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 66665
| || || | | || ||| |||| ||| || ||||| || || | ||| |||
Sbjct 713701 TCAATCTTGAGGAGATAAGATCGCTCCAGAGTCTTGAAACCGAAGTATTGGTAGTTGAAG 713642
Query 66666 TCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 66703
|| || || || | ||| | |||| ||| | |||||
Sbjct 713641 TCGCGGTCATACACAATCGCGGAGTCGAGCTCCTCCTT 713604
>seq6
Length=1299473
Score = 86.0 bits (94), Expect = 8e-12
Identities = 106/145 (73%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217
|| ||||| || ||| || ||||| || | | ||| | |||||||| || || ||
Sbjct 1188845 CAGGCGAAGTCAGTGTGAAGGCCCTCATCACGAGAAATCAGCTCGTTGGAGAAGGTCAGG 1188904
Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 36277
|| ||||| ||||||||||| || ||||| || ||||| ||||| | || |||||
Sbjct 1188905 CCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCGCTGAAGAAG 1188964
Query 36278 ATTCCTTCTACTGCCGCAAAGGCAA 36302
|| || || || || ||||||||||
Sbjct 1188965 ATACCCTCAACAGCAGCAAAGGCAA 1188989
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658146037048520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |