Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12-
21] 3,253 sequences; 60,403,714 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq1388 131 2e-25
seq19 98.7 1e-15
>seq1388
Length=1638
Score = 131 bits (144), Expect = 2e-25
Identities = 168/229 (73%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || |||| ||| | || | |||| ||||||||||| || ||||| ||||||
Sbjct 302 CCACCACGTAGACGGAGCACAAGATGAAGAGTAGACTCTTTCTGGATGTTGTAATCGGAG 361
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| |||| ||| || ||||| |||||||| |||| ||||||||||| || |||||
Sbjct 362 AGGGTGCGACCGTCCTCAAGCTGCTTACCAGCGAAGATGAGACGTTGCTGGTCCGGAGGA 421
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGT-TTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716
|| ||||| ||||| ||| |||| || || | | || | || || | || |||||
Sbjct 422 ATACCTTCCTTGTC-CTGAATTTTAGTCTTCACATTCTCAATGGTATCCGAGGATTCCAC 480
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
|||| ||| | |||||| || |||| ||||| |||||||||||||||
Sbjct 481 TTCAAGGGTGATCGTCTTACCAGTCAGAGTTTTCACGAATATTTGCATA 529
Score = 107 bits (118), Expect = 2e-18
Identities = 166/232 (72%), Gaps = 4/232 (2%)
Strand=Plus/Plus
Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594
|| || || || | ||| | || | ||||| ||||||||||| || ||||| ||||||
Sbjct 71 TGACCACCACGCAGACGAAGCACAAGGTGAAGAGTAGACTCTTTCTGGATGTTGTAATCG 130
Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654
| |||| ||| |||||||| ||||| || |||| ||||| ||||| || ||
Sbjct 131 GAAAGAGTGCGACCGTCCTCGAGCTGCTTACCGGCGAAGATGAGACGCTGCTGGTCCGGG 190
Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTC-CACT-GTGTCGGTGGGCT 139712
|| |||||||| || || ||| | || || || | |||| || | ||||||| || |
Sbjct 191 GGGATGCCTTCCTTATC-CTGAATCTTAGTCTT-GACGTTCTCAATAGTGTCGGAGGATT 248
Query 139713 CCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
||||||||| || | ||||| || || | || || ||||| || |||||
Sbjct 249 CCACCTCAAGAGTAATGGTCTTTCCAGTAAGGGTCTTCACGAAAATCTGCAT 300
Score = 93.3 bits (102), Expect = 4e-14
Identities = 141/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
|| ||||| || || || || || ||| | |||| |||||||||||| || |||
Sbjct 1106 GTGGACTCCTTCTGGATATTGTAGTCGGAAAGAGTGCGACCGTCTTCGAGCTGCTTGCCA 1165
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687
|| | || || |||||||| || || || || ||||| ||||| ||| |||| || ||
Sbjct 1166 GCGAAAATGAGTCGTTGCTGGTCCGGGGGAATACCTTCCTTGTC-CTGAATTTTGGTCTT 1224
Query 139688 AGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746
| | | || | ||||||| || ||| || |||| || | ||||| ||||| || ||
Sbjct 1225 AACGTTCTCGATAGTGTCGGAGGACTCAACTTCAAGAGTGATGGTCTTTCCGGTTAAGGT 1284
Query 139747 TTTTACGAATATTTGCAT 139764
|| ||||| || |||||
Sbjct 1285 CTTGACGAAAATCTGCAT 1302
Score = 86.0 bits (94), Expect = 6e-12
Identities = 113/157 (72%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668
|||||||||||| || ||||| |||| ||||||||||| || || || || ||||| ||
Sbjct 1375 GTCTTCGAGCTGCTTGCCAGCGAAGATAAGACGTTGCTGGTCCGGGGGAATACCTTCCTT 1434
Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728
||| ||| || || | | || | ||||||| | |||||| || | || |
Sbjct 1435 GTCCTGGATCTTGGTCTTGACATTCTCGATGGTGTCGGAAGACTCCACTTCGAGAGTAAT 1494
Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
|||||||| || || ||||| || || || ||||||
Sbjct 1495 AGTCTTGCCTGTTAAGGTTTTAACAAAGATCTGCATA 1531
>seq19
Length=502728
Score = 98.7 bits (108), Expect = 1e-15
Identities = 137/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 139573 CTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATA 139632
||| || || ||||| || ||||||| |||| || |||||||| ||||||||| |
Sbjct 172609 CTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCATCCTCGAGCTGCTTACCAGCAAA 172668
Query 139633 GATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTG 139692
||| || || ||||| || || || ||||| || ||||| ||| || || | |
Sbjct 172669 GATAAGTCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTT 172728
Query 139693 TTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTAC 139752
|| | ||||||| | ||||||||||| ||| | |||||| || || | || || ||
Sbjct 172729 GTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGAC 172788
Query 139753 GAATATTTGCAT 139764
||| || |||||
Sbjct 172789 GAAGATCTGCAT 172800
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496043828797600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |