Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12-
21] 3,253 sequences; 60,403,714 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq5 221 2e-52
seq6 98.7 1e-15
>seq5
Length=1316942
Score = 221 bits (244), Expect = 2e-52
Identities = 639/972 (66%), Gaps = 20/972 (2%)
Strand=Plus/Minus
Query 79621 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAG 79680
|| || || ||||| || || ||||||| || | || | || || |||||||||
Sbjct 714565 GAGGCAAGGTTACAGACAGCGACCTCATCAGGGGCACAGTACTCAATGATCTCAGTGCAG 714506
Query 79681 AGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 79740
||||| | ||||| || | || | || || ||||| ||| || || |||
Sbjct 714505 AGGTTGGAGCTGCGGATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCATGCGTCC 714446
Query 79741 TTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA-C 79799
|| || || ||||| || | || || ||| | |||| || | || || | ||| | |
Sbjct 714445 TTGTACAGCATGAAGGGGTTGCCGGTCTCAGTTTGAGCCTCGAGGATGGCGTACCACAAC 714386
Query 79800 GACTCGAGCCTTTATTATAGACTTGTATCTCTTTTCT--CTT-TCGTATTGTGTATATAA 79856
|| ||||||| || | |||| | ||| | ||| ||||| | |||||
Sbjct 714385 TTCT-GAGCCTTCATGGT---CTTGCGACCCTTGCCAAGCTTCTCGTACTTCTCGTATAA 714330
Query 79857 TCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAA 79916
|||||||| || || | ||| | | ||||| || |||| || |||||||
Sbjct 714329 GGCCTCGAACTCCTCGCCGTAGCAGTCGGCAAGGCCAGGGCACTCGTTGGGGCACATCAG 714270
Query 79917 CGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 79976
| ||| || || | | || || || ||||| ||||||||||| |||||||| ||||
Sbjct 714269 AGTCCAATCGCCGTTCTTCTCAACCCGCTTCATGAAGAGATCAGGGATCCAAAGGGCTAG 714210
Query 79977 AAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 80036
|| ||||| | || | ||| || || || ||||| || || |||||| |
Sbjct 714209 GAAAAGATCGCGGGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGCAGGTCCAGGAACTC 714150
Query 80037 CATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCC 80096
| | ||| | ||||| || || | ||| ||||| | | | |||||||| ||||| ||
Sbjct 714149 GAAGACATCCGCGTGCCAGGGCTCGAGGTAGATGGCGAAAGCACCCGGTCGCTTGTTGCC 714090
Query 80097 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATT 80156
||||| || | ||||| ||| ||||| || | || | | ||| ||||| | ||| ||
Sbjct 714089 ACCCTGGTCGACGTATCGAGCAGTGTTGTTGAAGACACGGAGCATGGGAATGACACCGTT 714030
Query 80157 GGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT-A 80215
||| ||||| ||||| |||| || || ||| ||||||| ||| | | | | |
Sbjct 714029 GGAGGTACCGTTGGTACCGGCAATGTAAGAGCCAGTGGCACGGATA-CGGTGAGCGTTGA 713971
Query 80216 GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT-TTTAACGTATCATAGATG 80274
|||| || || || ||||| || ||||| | || || ||| || | || ||||||||
Sbjct 713970 GACCGATACCGCCAGCCATCTTGGAGATCATGGCACA-CGTCTTGAGAGTGTCATAGATA 713912
Query 80275 CCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 80334
||||| |||||||| || |||||| || || || ||| ||||| ||| | ||
Sbjct 713911 CCCTCGATGCTATCCTCCTTCATGTCAACCAGGAAGCAGGAAGACAGCTGGGGCTGAGGG 713852
Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394
|| || || || || | ||| || ||||| || |||||| || |||| || |||
Sbjct 713851 GTACCAGCGTTGAAAAGGGTGGGCGAAGCATGGGTAAACAGCTTGCTGGACATGAGGTTG 713792
Query 80395 TACGTCTCAATAGCTGATTCTATATC----CCATTGATGAATTCCTACCGCGACACGCAT 80450
|| ||||| | | || || || || |||| || || | ||||||||
Sbjct 713791 TAGGTCTCCAGGACACGCTCAATGTCATCGCCCCAGATG----CCAACAGACACACGCAT 713736
Query 80451 TAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTC 80510
| ||||||||| |||| ||||| |||||| | || || | | |||||| ||
Sbjct 713735 GATCATGTGCTGCGGTCGCTCAACAATCTTGCCGTCAATCTTGAGGAGATAAGATCGCTC 713676
Query 80511 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTT 80570
|| ||| || ||||| || || | ||| ||||| || || || | ||| | ||||
Sbjct 713675 CAGAGTCTTGAAACCGAAGTATTGGTAGTTGAAGTCGCGGTCATACACAATCGCGGAGTC 713616
Query 80571 GAGTTTATCCTT 80582
||| | |||||
Sbjct 713615 GAGCTCCTCCTT 713604
>seq6
Length=1299473
Score = 98.7 bits (108), Expect = 1e-15
Identities = 111/149 (74%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019
|| ||||| || ||| || ||||| || | | ||| || |||||||| || || ||
Sbjct 1188845 CAGGCGAAGTCAGTGTGAAGGCCCTCATCACGAGAAATCAGCTCGTTGGAGAAGGTCAGG 1188904
Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079
|| ||||| ||||||||||| || ||||| || ||||| ||||| | || ||||||
Sbjct 1188905 CCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCGCTGAAGAAG 1188964
Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAG 50108
|| || || || || ||||||||||| ||
Sbjct 1188965 ATACCCTCAACAGCAGCAAAGGCAACCAG 1188993
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718239593394920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |