Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12- 21] 3,253 sequences; 60,403,714 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq5 221 2e-52 seq6 98.7 1e-15 >seq5 Length=1316942 Score = 221 bits (244), Expect = 2e-52 Identities = 639/972 (66%), Gaps = 20/972 (2%) Strand=Plus/Minus Query 79621 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAG 79680 || || || ||||| || || ||||||| || | || | || || ||||||||| Sbjct 714565 GAGGCAAGGTTACAGACAGCGACCTCATCAGGGGCACAGTACTCAATGATCTCAGTGCAG 714506 Query 79681 AGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 79740 ||||| | ||||| || | || | || || ||||| ||| || || ||| Sbjct 714505 AGGTTGGAGCTGCGGATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCATGCGTCC 714446 Query 79741 TTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA-C 79799 || || || ||||| || | || || ||| | |||| || | || || | ||| | | Sbjct 714445 TTGTACAGCATGAAGGGGTTGCCGGTCTCAGTTTGAGCCTCGAGGATGGCGTACCACAAC 714386 Query 79800 GACTCGAGCCTTTATTATAGACTTGTATCTCTTTTCT--CTT-TCGTATTGTGTATATAA 79856 || ||||||| || | |||| | ||| | ||| ||||| | ||||| Sbjct 714385 TTCT-GAGCCTTCATGGT---CTTGCGACCCTTGCCAAGCTTCTCGTACTTCTCGTATAA 714330 Query 79857 TCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAA 79916 |||||||| || || | ||| | | ||||| || |||| || ||||||| Sbjct 714329 GGCCTCGAACTCCTCGCCGTAGCAGTCGGCAAGGCCAGGGCACTCGTTGGGGCACATCAG 714270 Query 79917 CGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 79976 | ||| || || | | || || || ||||| ||||||||||| |||||||| |||| Sbjct 714269 AGTCCAATCGCCGTTCTTCTCAACCCGCTTCATGAAGAGATCAGGGATCCAAAGGGCTAG 714210 Query 79977 AAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 80036 || ||||| | || | ||| || || || ||||| || || |||||| | Sbjct 714209 GAAAAGATCGCGGGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGCAGGTCCAGGAACTC 714150 Query 80037 CATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCC 80096 | | ||| | ||||| || || | ||| ||||| | | | |||||||| ||||| || Sbjct 714149 GAAGACATCCGCGTGCCAGGGCTCGAGGTAGATGGCGAAAGCACCCGGTCGCTTGTTGCC 714090 Query 80097 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATT 80156 ||||| || | ||||| ||| ||||| || | || | | ||| ||||| | ||| || Sbjct 714089 ACCCTGGTCGACGTATCGAGCAGTGTTGTTGAAGACACGGAGCATGGGAATGACACCGTT 714030 Query 80157 GGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT-A 80215 ||| ||||| ||||| |||| || || ||| ||||||| ||| | | | | | Sbjct 714029 GGAGGTACCGTTGGTACCGGCAATGTAAGAGCCAGTGGCACGGATA-CGGTGAGCGTTGA 713971 Query 80216 GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT-TTTAACGTATCATAGATG 80274 |||| || || || ||||| || ||||| | || || ||| || | || |||||||| Sbjct 713970 GACCGATACCGCCAGCCATCTTGGAGATCATGGCACA-CGTCTTGAGAGTGTCATAGATA 713912 Query 80275 CCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 80334 ||||| |||||||| || |||||| || || || ||| ||||| ||| | || Sbjct 713911 CCCTCGATGCTATCCTCCTTCATGTCAACCAGGAAGCAGGAAGACAGCTGGGGCTGAGGG 713852 Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 || || || || || | ||| || ||||| || |||||| || |||| || ||| Sbjct 713851 GTACCAGCGTTGAAAAGGGTGGGCGAAGCATGGGTAAACAGCTTGCTGGACATGAGGTTG 713792 Query 80395 TACGTCTCAATAGCTGATTCTATATC----CCATTGATGAATTCCTACCGCGACACGCAT 80450 || ||||| | | || || || || |||| || || | |||||||| Sbjct 713791 TAGGTCTCCAGGACACGCTCAATGTCATCGCCCCAGATG----CCAACAGACACACGCAT 713736 Query 80451 TAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTC 80510 | ||||||||| |||| ||||| |||||| | || || | | |||||| || Sbjct 713735 GATCATGTGCTGCGGTCGCTCAACAATCTTGCCGTCAATCTTGAGGAGATAAGATCGCTC 713676 Query 80511 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTT 80570 || ||| || ||||| || || | ||| ||||| || || || | ||| | |||| Sbjct 713675 CAGAGTCTTGAAACCGAAGTATTGGTAGTTGAAGTCGCGGTCATACACAATCGCGGAGTC 713616 Query 80571 GAGTTTATCCTT 80582 ||| | ||||| Sbjct 713615 GAGCTCCTCCTT 713604 >seq6 Length=1299473 Score = 98.7 bits (108), Expect = 1e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| || ||| || ||||| || | | ||| || |||||||| || || || Sbjct 1188845 CAGGCGAAGTCAGTGTGAAGGCCCTCATCACGAGAAATCAGCTCGTTGGAGAAGGTCAGG 1188904 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079 || ||||| ||||||||||| || ||||| || ||||| ||||| | || |||||| Sbjct 1188905 CCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCGCTGAAGAAG 1188964 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAG 50108 || || || || || ||||||||||| || Sbjct 1188965 ATACCCTCAACAGCAGCAAAGGCAACCAG 1188993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718239593394920