Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12- 21] 3,253 sequences; 60,403,714 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq5 192 8e-44 seq6 91.5 2e-13 >seq5 Length=1316942 Score = 192 bits (212), Expect = 8e-44 Identities = 465/698 (67%), Gaps = 12/698 (2%) Strand=Plus/Minus Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATA 72033 ||||| || || || || ||||||| | ||| || || | | | || || ||||| Sbjct 714295 CCAGGGCACTCGTTGGGGCACATCAGAGTCCAATCGCCGTTCTTCTCAACCCGCTTCATG 714236 Query 72034 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 72093 ||||||||||| |||||||| |||| || ||||| | || | ||| || || || Sbjct 714235 AAGAGATCAGGGATCCAAAGGGCTAGGAAAAGATCGCGGGCGCGGACCTCTTCCTTGCCG 714176 Query 72094 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 72153 ||||| || || |||||| | | | ||| | ||||| || || | ||| ||| Sbjct 714175 TGGTTCTTGCGCAGGTCCAGGAACTCGAAGACATCCGCGTGCCAGGGCTCGAGGTAGATG 714116 Query 72154 GCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 72213 || | | | ||||| || ||||| || ||||| || | ||||| ||| ||||| || | Sbjct 714115 GCGAAAGCACCCGGTCGCTTGTTGCCACCCTGGTCGACGTATCGAGCAGTGTTGTTGAAG 714056 Query 72214 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 72273 || | | ||| ||||| | ||| ||||| | ||| ||||| |||| || || ||| Sbjct 714055 ACACGGAGCATGGGAATGACACCGTTGGAGGTACCGTTGGTACCGGCAATGTAAGAGCCA 713996 Query 72274 CTGGCACGAATATTGCTAATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGC 72332 ||||||| ||| | | | | | ||||| || || || ||||| || ||||| | || Sbjct 713995 GTGGCACGGATA-CGGTGAGCGTTGAGACCGATACCGCCAGCCATCTTGGAGATCATGGC 713937 Query 72333 GCATCGT-TTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 72391 || ||| || | || |||||||| ||||| || ||||| ||| |||||| || || | Sbjct 713936 ACA-CGTCTTGAGAGTGTCATAGATACCCTCGATGCTATCCTCCTTCATGTCAACCAGGA 713878 Query 72392 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 72451 | ||| ||||| ||| | || || || || || || | ||| || ||||| || | Sbjct 713877 AGCAGGAAGACAGCTGGGGCTGAGGGGTACCAGCGTTGAAAAGGGTGGGCGAAGCATGGG 713818 Query 72452 TAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC----CCAT 72507 ||||| || |||| || ||||| ||||| | | || || || || Sbjct 713817 TAAACAGCTTGCTGGACATGAGGTTGTAGGTCTCCAGGACACGCTCAATGTCATCGCCCC 713758 Query 72508 TGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTA 72567 |||| || || | |||||||| | ||| ||||| |||| ||||| |||||| Sbjct 713757 AGATG----CCAACAGACACACGCATGATCATGTGCTGCGGTCGCTCAACAATCTTGCCG 713702 Query 72568 TTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 72627 | || || | | || ||| |||| ||| || ||||| || || | ||| ||| Sbjct 713701 TCAATCTTGAGGAGATAAGATCGCTCCAGAGTCTTGAAACCGAAGTATTGGTAGTTGAAG 713642 Query 72628 TCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTT 72665 || || || || | ||| | || | ||| | ||||| Sbjct 713641 TCGCGGTCATACACAATCGCGGAGTCGAGCTCCTCCTT 713604 Score = 89.7 bits (98), Expect = 7e-13 Identities = 189/279 (68%), Gaps = 5/279 (2%) Strand=Plus/Minus Query 70801 GTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGA 70860 || ||||| ||||||| || || || | || ||||| ||||||||||| || || ||| Sbjct 715477 GTGAACTGGATGGGAGCGGCAGCAGCCTGGGTGCGTAGGTAGTACATGCCAGTCTTGAGA 715418 Query 70861 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATG 70920 ||||| |||| || ||| ||||| || || | || | |||| || ||| Sbjct 715417 CCGAGCTTCCAGCCAGCAAAGTGCATGCTGGTAATCTTACCCATGGTAGGGTCCTTCATG 715358 Query 70921 TGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 70980 || || || | ||||| ||||| |||||||| || | ||| |||| ||| | ||| Sbjct 715357 TGGATGTTGAGGGACTGGGACTGATCAATGAAGGCACCTCGGTCGGCAGACATCTGGATG 715298 Query 70981 A-TCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 71039 | | | | || | ||| ||||| | ||| || || | ||| ||||| | |||| Sbjct 715297 ACTTGAC-GCTGGGAAATCTCCCACACAGTCTTGTACAGAGACTTGATATCAGCGGGAAT 715239 Query 71040 GTTTG---TATTCTGAATGGATCCACCATCTGCAATAAT 71075 ||| | | | ||| ||||| ||||| || ||||| || Sbjct 715238 GTTGGGGATGTCCTGGATGGAACCACCCTCGGCAATGAT 715200 >seq6 Length=1299473 Score = 91.5 bits (100), Expect = 2e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || ||||| || ||| || |||||||| | | ||| | |||||||| || || || Sbjct 1188845 CAGGCGAAGTCAGTGTGAAGGCCCTCATCACGAGAAATCAGCTCGTTGGAGAAGGTCAGG 1188904 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184 || ||||| ||||||||||| || ||||| || || || ||||| | || |||||| Sbjct 1188905 CCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCGCTGAAGAAG 1188964 Query 42185 ATTCCTTCTACTGCCGCAAAGGCAA 42209 || || || || || |||||||||| Sbjct 1188965 ATACCCTCAACAGCAGCAAAGGCAA 1188989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671111909802280