Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12- 21] 3,253 sequences; 60,403,714 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq1388 132 5e-26 seq8 102 8e-17 >seq1388 Length=1638 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || |||| ||| | || | ||||| ||||| ||||| || |||||||||||| Sbjct 302 CCACCACGTAGACGGAGCACAAGATGAAGAGTAGACTCTTTCTGGATGTTGTAATCGGAG 361 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||| || || || |||||||| |||| ||||||||||| || ||||| Sbjct 362 AGGGTGCGACCGTCCTCAAGCTGCTTACCAGCGAAGATGAGACGTTGCTGGTCCGGAGGA 421 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| |||||| || | | || | || |||| || ||| ||| Sbjct 422 ATACCTTCCTTGTCCTGAATTTTAGTCTTCACATTCTCAATGGTATCCGAGGATTCCACT 481 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||| || | |||||| || |||| ||||| ||||||||||||||| Sbjct 482 TCAAGGGTGATCGTCTTACCAGTCAGAGTTTTCACGAATATTTGCATA 529 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 142982 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 143041 |||| ||||| ||||| || |||||||||||| | |||| ||| ||||| || Sbjct 98 TGAAGAGTAGACTCTTTCTGGATGTTGTAATCGGAAAGAGTGCGACCGTCCTCGAGCTGC 157 Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101 ||||| || |||| ||||| ||||| || || || |||||||| || || ||| || Sbjct 158 TTACCGGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCTTCCTTATCCTGAATCTTA 217 Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161 || | | || | ||||| | || ||| || |||| ||| | ||||| || || Sbjct 218 GTCTTGACGTTCTCAATAGTGTCGGAGGATTCCACCTCAAGAGTAATGGTCTTTCCAGTA 277 Query 143162 AATGTTTTTACGAATATTTGCAT 143184 | || || ||||| || ||||| Sbjct 278 AGGGTCTTCACGAAAATCTGCAT 300 >seq8 Length=1068389 Score = 102 bits (112), Expect = 8e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 142982 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 143041 |||| ||||| || || || |||||||||||||||| |||| || || || || Sbjct 632040 TGAAGGGTAGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCATCCTCCAGCTGC 631981 Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101 ||||||||| |||| || || ||||| ||||| || ||||| || ||||| ||| || Sbjct 631980 TTACCAGCAAAGATAAGTCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATCTTC 631921 Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161 || | | || | || || ||| || || |||| ||| | |||||| |||||| Sbjct 631920 GACTTCACATTGTCGATGGTATCGCTGGACTCGACCTCAAGAGTGATCGTCTTTCCGGTC 631861 Query 143162 AATGTTTTTACGAATATTTGCATA 143185 | || || ||||| || |||||| Sbjct 631860 AGGGTCTTCACGAAGATCTGCATA 631837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506993783526960