Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12-
21] 3,253 sequences; 60,403,714 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq6 140 5e-28
seq5 131 2e-25
>seq6
Length=1299473
Score = 140 bits (154), Expect = 5e-28
Identities = 349/521 (67%), Gaps = 22/521 (4%)
Strand=Plus/Minus
Query 125342 AATCGAC-ACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATG 125400
||||||| | || || | || || || |||||| | |||| || ||||||||| | |
Sbjct 1189079 AATCGACCATAGTTCCCTGCATCCGAAAGAAGGCTGACTGGGCCATCCGGTGGATCCAGG 1189020
Query 125401 ACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCT 125460
|| | | || || | ||| | | ||||| || || || || || ||||| |||||||
Sbjct 1189019 ACAAGGACTCGTCCTTTGCCCAGCGCCTGGTTGCCTTTGCTGCTGTTGAGGGTATCTTCT 1188960
Query 125461 TTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGA 125520
| ||| ||||| ||||||| |||||||||||||| || |||||||| || ||||
Sbjct 1188959 TCAGCGGTGCCTTTGCTTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGCCTGA 1188900
Query 125521 CGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTAC 125580
| | |||||| | || ||||| || |||||||| ||| |||||| ||| | | |
Sbjct 1188899 CCTTCTCCAACGAGCTGATTTCTCGTGATGAGGGCCTTCACACTGACTTCGCC-TGC--C 1188843
Query 125581 TGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATC---AACA 125637
|| | | ||| | | || || | | | ||| | ||| ||||| |||
Sbjct 1188842 TG---CTCCACTCT---CATCTGAAGGGTCGTGCTAGC---AAGAAGATCATCGAAGACA 1188792
Query 125638 TTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCA 125697
| | || |||||||| | || || | ||||| || ||||| | || || | |
Sbjct 1188791 TCATCACTGATGCCGTCACCATCGAGAAGGAGTTCCTCACCGAGGCTCTGCCCTGCGCCC 1188732
Query 125698 TGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTAC 125757
|| | |||||||||| | || ||| ||||||| ||||| || || |||||||| |
Sbjct 1188731 TGCTCGGCATGAACTCTGACCTCATGAAGCAGTACATTGAGTTCGTTGCCGATCGTCTTC 1188672
Query 125758 TGTACGAGTTGATTGGC--CG-CAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGA 125814
| || | ||| || ||| | ||||| | | || ||||| || ||||||
Sbjct 1188671 TTGTCG---CTCTCGGCAACGAGAAGGTCTACAAGTCGACCAACCCCTTCGACTTCATGG 1188615
Query 125815 CCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAG 125855
| ||| || || | || ||||||||||| |||||||||
Sbjct 1188614 AGAACATCTCCCTCGGTGGCAAGACCAACTTCTTCGAGAAG 1188574
Score = 140 bits (154), Expect = 5e-28
Identities = 210/292 (72%), Gaps = 10/292 (3%)
Strand=Plus/Minus
Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078
|| ||| | |||||||| ||||| ||||||| || ||||| | || ||| | ||||||
Sbjct 1189454 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACTGCGGAGGAGATTGATCTG 1189395
Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATA--- 125135
|| ||||| || |||||||| | | || |||||| | || | |||| |
Sbjct 1189394 TCGAAGGATCTTCACGATTGGAACAACCGCCTGACTG---CCGACGAACAGTTCTTCGTC 1189338
Query 125136 TCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGAC 125194
|| ||||| ||||||||||| |||| || ||||| ||||||||||| || || |||||
Sbjct 1189337 TCTCACATCTTGGCCTTCTTCGCCGCATCTGATGGCATCGTCAACGAGAACCTCGTTGA- 1189279
Query 125195 ACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCA 125253
| ||||| ||| | || || |||| ||| ||||| ||||| ||||| ||||
Sbjct 1189278 AAGATTCAGCGGCGAGGTCCAGATCCCTGAGG-CTCGCTGCTTCTACGGCTTCCAGATCA 1189220
Query 125254 TGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACAT 125305
|||| |||||| | ||||| || | ||||| ||| ||||||| |||||
Sbjct 1189219 TGATGGAGAACATCCACTCTGAGACCTACTCCCTACTCATTGACACTTACAT 1189168
>seq5
Length=1316942
Score = 131 bits (144), Expect = 2e-25
Identities = 309/459 (67%), Gaps = 6/459 (1%)
Strand=Plus/Plus
Query 96864 CGATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCT 96923
|||||||| ||||| ||||| || || || || ||| | ||| ||||| | || ||
Sbjct 714072 CGATACGTCGACCAGGGTGGCAACAAGCGACCGGGTGCTTTCGCCATCTACCTCGAGCCC 714131
Query 96924 TGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCA 96983
||||||||||| || || || || | || ||||||| ||| ||| |||||||
Sbjct 714132 TGGCACGCGGATGTCTTCGAGTTCCTGGACCTGCGCAAGAACCACGGCAAGGAAGAGGTC 714191
Query 96984 CGAGCCAGGGA-CTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAA 97042
|| ||| | || ||| | || || || ||| | || ||| | ||||||||||| || |
Sbjct 714192 CGCGCCCGCGATCTTTTCCTA-GCCCTTTGGATCCCTGATCTCTTCATGAAGCGGGTTGA 714250
Query 97043 CGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTG 97102
| ||| | |||| || ||||||||| || || || || || |||| ||||
Sbjct 714251 GAAGAACGGCGATTGGACTCTGATGTGCCCCAACGAGTGCCCTGGCCTTGCCGACTGCTA 714310
Query 97103 GGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGC-CGATACGTGAGAC 97161
||||| ||||| |||||| ||| | |||||| | ||| | || ||||
Sbjct 714311 CGGCGAGGAGTTCGAGGCCTTATACGAGAAGTACGAGAAGCTTGGCAAGGGTCGCAAGAC 714370
Query 97162 GAGTCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACT 97220
| | | || | |||| ||||| | |||||| | |||||| ||||| || |
Sbjct 714371 CA-TGAAGGCTC-AGAAGTTGTGGTACGCCATCCTCGAGGCTCAAACTGAGACCGGCAAC 714428
Query 97221 CCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACC 97280
|| | ||| || |||||||| | || ||||| |||||||| || ||||||||
Sbjct 714429 CCCTTCATGCTGTACAAGGACGCATGCAACCGCAAGAGCAACCAGAAGAACCTGGGCACC 714488
Query 97281 ATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTAC 97319
||| ||||||| || ||||| || || | ||||||
Sbjct 714489 ATCCGCAGCTCCAACCTCTGCACTGAGATCATTGAGTAC 714527
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741029066680280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |