Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12- 21] 3,253 sequences; 60,403,714 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq6 140 5e-28 seq5 131 2e-25 >seq6 Length=1299473 Score = 140 bits (154), Expect = 5e-28 Identities = 349/521 (67%), Gaps = 22/521 (4%) Strand=Plus/Minus Query 125342 AATCGAC-ACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATG 125400 ||||||| | || || | || || || |||||| | |||| || ||||||||| | | Sbjct 1189079 AATCGACCATAGTTCCCTGCATCCGAAAGAAGGCTGACTGGGCCATCCGGTGGATCCAGG 1189020 Query 125401 ACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCT 125460 || | | || || | ||| | | ||||| || || || || || ||||| ||||||| Sbjct 1189019 ACAAGGACTCGTCCTTTGCCCAGCGCCTGGTTGCCTTTGCTGCTGTTGAGGGTATCTTCT 1188960 Query 125461 TTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGA 125520 | ||| ||||| ||||||| |||||||||||||| || |||||||| || |||| Sbjct 1188959 TCAGCGGTGCCTTTGCTTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGCCTGA 1188900 Query 125521 CGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTAC 125580 | | |||||| | || ||||| || |||||||| ||| |||||| ||| | | | Sbjct 1188899 CCTTCTCCAACGAGCTGATTTCTCGTGATGAGGGCCTTCACACTGACTTCGCC-TGC--C 1188843 Query 125581 TGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATC---AACA 125637 || | | ||| | | || || | | | ||| | ||| ||||| ||| Sbjct 1188842 TG---CTCCACTCT---CATCTGAAGGGTCGTGCTAGC---AAGAAGATCATCGAAGACA 1188792 Query 125638 TTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCA 125697 | | || |||||||| | || || | ||||| || ||||| | || || | | Sbjct 1188791 TCATCACTGATGCCGTCACCATCGAGAAGGAGTTCCTCACCGAGGCTCTGCCCTGCGCCC 1188732 Query 125698 TGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTAC 125757 || | |||||||||| | || ||| ||||||| ||||| || || |||||||| | Sbjct 1188731 TGCTCGGCATGAACTCTGACCTCATGAAGCAGTACATTGAGTTCGTTGCCGATCGTCTTC 1188672 Query 125758 TGTACGAGTTGATTGGC--CG-CAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGA 125814 | || | ||| || ||| | ||||| | | || ||||| || |||||| Sbjct 1188671 TTGTCG---CTCTCGGCAACGAGAAGGTCTACAAGTCGACCAACCCCTTCGACTTCATGG 1188615 Query 125815 CCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAG 125855 | ||| || || | || ||||||||||| ||||||||| Sbjct 1188614 AGAACATCTCCCTCGGTGGCAAGACCAACTTCTTCGAGAAG 1188574 Score = 140 bits (154), Expect = 5e-28 Identities = 210/292 (72%), Gaps = 10/292 (3%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| | |||||||| ||||| ||||||| || ||||| | || ||| | |||||| Sbjct 1189454 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACTGCGGAGGAGATTGATCTG 1189395 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATA--- 125135 || ||||| || |||||||| | | || |||||| | || | |||| | Sbjct 1189394 TCGAAGGATCTTCACGATTGGAACAACCGCCTGACTG---CCGACGAACAGTTCTTCGTC 1189338 Query 125136 TCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGAC 125194 || ||||| ||||||||||| |||| || ||||| ||||||||||| || || ||||| Sbjct 1189337 TCTCACATCTTGGCCTTCTTCGCCGCATCTGATGGCATCGTCAACGAGAACCTCGTTGA- 1189279 Query 125195 ACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCA 125253 | ||||| ||| | || || |||| ||| ||||| ||||| ||||| |||| Sbjct 1189278 AAGATTCAGCGGCGAGGTCCAGATCCCTGAGG-CTCGCTGCTTCTACGGCTTCCAGATCA 1189220 Query 125254 TGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACAT 125305 |||| |||||| | ||||| || | ||||| ||| ||||||| ||||| Sbjct 1189219 TGATGGAGAACATCCACTCTGAGACCTACTCCCTACTCATTGACACTTACAT 1189168 >seq5 Length=1316942 Score = 131 bits (144), Expect = 2e-25 Identities = 309/459 (67%), Gaps = 6/459 (1%) Strand=Plus/Plus Query 96864 CGATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCT 96923 |||||||| ||||| ||||| || || || || ||| | ||| ||||| | || || Sbjct 714072 CGATACGTCGACCAGGGTGGCAACAAGCGACCGGGTGCTTTCGCCATCTACCTCGAGCCC 714131 Query 96924 TGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCA 96983 ||||||||||| || || || || | || ||||||| ||| ||| ||||||| Sbjct 714132 TGGCACGCGGATGTCTTCGAGTTCCTGGACCTGCGCAAGAACCACGGCAAGGAAGAGGTC 714191 Query 96984 CGAGCCAGGGA-CTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAA 97042 || ||| | || ||| | || || || ||| | || ||| | ||||||||||| || | Sbjct 714192 CGCGCCCGCGATCTTTTCCTA-GCCCTTTGGATCCCTGATCTCTTCATGAAGCGGGTTGA 714250 Query 97043 CGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTG 97102 | ||| | |||| || ||||||||| || || || || || |||| |||| Sbjct 714251 GAAGAACGGCGATTGGACTCTGATGTGCCCCAACGAGTGCCCTGGCCTTGCCGACTGCTA 714310 Query 97103 GGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGC-CGATACGTGAGAC 97161 ||||| ||||| |||||| ||| | |||||| | ||| | || |||| Sbjct 714311 CGGCGAGGAGTTCGAGGCCTTATACGAGAAGTACGAGAAGCTTGGCAAGGGTCGCAAGAC 714370 Query 97162 GAGTCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACT 97220 | | | || | |||| ||||| | |||||| | |||||| ||||| || | Sbjct 714371 CA-TGAAGGCTC-AGAAGTTGTGGTACGCCATCCTCGAGGCTCAAACTGAGACCGGCAAC 714428 Query 97221 CCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACC 97280 || | ||| || |||||||| | || ||||| |||||||| || |||||||| Sbjct 714429 CCCTTCATGCTGTACAAGGACGCATGCAACCGCAAGAGCAACCAGAAGAACCTGGGCACC 714488 Query 97281 ATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTAC 97319 ||| ||||||| || ||||| || || | |||||| Sbjct 714489 ATCCGCAGCTCCAACCTCTGCACTGAGATCATTGAGTAC 714527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741029066680280