Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12-
21] 3,253 sequences; 60,403,714 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq3070 141 2e-28
seq1388 134 3e-26
seq8 134 3e-26
>seq3070
Length=537
Score = 141 bits (156), Expect = 2e-28
Identities = 161/216 (75%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407
|| || ||||||| ||||| || |||||||| || ||||| || ||||| | | ||
Sbjct 236 AGCACAAGATGTAGAGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGGTCATCC 177
Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467
|| ||||| ||||| ||||| || || | ||| ||||| ||||| |||||||| || |||
Sbjct 176 TCCAGTTGCTTTCCCGCAAAGATGAGGCGCTGCTGATCCGGAGGAATTCCTTCCTTGTCC 117
Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527
|||||||| | || ||||| | | ||||| | ||||| || || || ||||||
Sbjct 116 TGAATCTTGGTCTTCACATTGCTGATGCTATCGGATGACTCTACTTCGAGAGTGATAGTC 57
Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563
|| || || || ||||| || || |||||||| |||
Sbjct 56 TTTCCGGTTAGCGTTTTGACGAAGATCTGCATCTTG 21
>seq1388
Length=1638
Score = 134 bits (148), Expect = 3e-26
Identities = 170/231 (74%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
||||| || | ||| | || || ||||| | ||||| |||||||| || || || ||
Sbjct 299 ATTCCACCACGTAGACGGAGCACAAGATGAAGAGTAGACTCTTTCTGGATGTTGTAATCG 358
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| || || | |||||| || || || || ||||| || || || | || || || |||
Sbjct 359 GAGAGGGTGCGACCGTCCTCAAGCTGCTTACCAGCGAAGATGAGACGTTGCTGGTCCGGA 418
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGG-TTC 104508
|| || ||||| || |||||||| || | || ||||| || | |||||| | ||| |||
Sbjct 419 GGAATACCTTCCTTGTCCTGAATTTTAGTCTTCACATTCTCAATGGTATC-CGAGGATTC 477
Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| || || || || ||||||||||| || ||||| || ||||| |||||
Sbjct 478 CACTTCAAGGGTGATCGTCTTACCAGTCAGAGTTTTCACGAATATTTGCAT 528
Score = 129 bits (142), Expect = 1e-24
Identities = 157/214 (73%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406
||| || || || | ||||| |||||||| || || || || || ||||| | ||||||
Sbjct 88 AAGCACAAGGTGAAGAGTAGACTCTTTCTGGATGTTGTAATCGGAAAGAGTGCGACCGTC 147
Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466
|| || || || || || || || || | ||| || || || || || ||||| |||||
Sbjct 148 CTCGAGCTGCTTACCGGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCTTCCTTATC 207
Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526
||||||||| | || || || || | || ||| | ||| ||||| || ||||| ||
Sbjct 208 CTGAATCTTAGTCTTGACGTTCTCAATAGTGTCGGAGGATTCCACCTCAAGAGTAATGGT 267
Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560
||| |||||||| || || || || |||||||||
Sbjct 268 CTTTCCAGTAAGGGTCTTCACGAAAATCTGCATT 301
Score = 122 bits (134), Expect = 2e-22
Identities = 165/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
||||| || | || | || || || || | || || || ||||| || || ||||||
Sbjct 1301 ATTCCACCGCGGAGACGGAGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCA 1360
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| ||||| | |||||||| || || || ||||| || || || | || || || ||
Sbjct 1361 GAAAGAGTACGGCCGTCTTCGAGCTGCTTGCCAGCGAAGATAAGACGTTGCTGGTCCGGG 1420
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || ||||| || ||||| ||||| | || ||||| || | ||| ||| || ||
Sbjct 1421 GGAATACCTTCCTTGTCCTGGATCTTGGTCTTGACATTCTCGATGGTGTCGGAAGACTCC 1480
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| || || ||||||||||| || || | ||||| ||||| ||||||||
Sbjct 1481 ACTTCGAGAGTAATAGTCTTGCCTGTTAAGGTTTTAACAAAGATCTGCAT 1530
Score = 114 bits (126), Expect = 3e-20
Identities = 164/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
||||| || | || | || || ||||| | |||||||| || || || || ||||||
Sbjct 755 ATTCCGCCGCGAAGACGCAGCACGAGATGAAGAGTAGATTCCTTTTGGATGTTGTAGTCA 814
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| || || | |||||| || ||||| || ||||| || || || | ||| || || ||
Sbjct 815 GACAGGGTGCGACCGTCCTCAAGTTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGG 874
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || ||||| |||||||||||||| | || || || || | || ||| | ||
Sbjct 875 GGGATGCCTTCCTTATCCTGAATCTTAGTCTTCACGTTCTCGATAGTGTCGGAGGACTCA 934
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560
|| || || || || ||||| || || | || || || || |||||||||
Sbjct 935 ACTTCAAGAGTGATGGTCTTTCCGGTTAAGGTCTTGACGAAAATCTGCATT 985
>seq8
Length=1068389
Score = 134 bits (148), Expect = 3e-26
Identities = 157/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407
|| || || |||| ||||| |||||||| || || |||||||| || |||| ||| ||
Sbjct 631821 AGAACCAGGTGTAGAGTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTTCGACCATCC 631762
Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467
|| || || ||||| || || || || | ||| ||||| || || || || || || |||
Sbjct 631761 TCAAGCTGCTTTCCGGCGAAGATGAGTCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCC 631702
Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527
|||||||| | || || || || | |||||| | || ||||| || || ||||||
Sbjct 631701 TGAATCTTCGACTTGACGTTGTCGATGGTATCAGATGACTCCACCTCGAGGGTGATAGTC 631642
Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||||| || || || || ||||| ||||||||
Sbjct 631641 TTACCGGTGAGGGTCTTGACAAAGATCTGCAT 631610
Score = 107 bits (118), Expect = 4e-18
Identities = 142/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
||||| || ||||| || || || || || || | ||| || || || || || |||
Sbjct 632034 GTAGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCATCCTCCAGCTGCTTACCA 631975
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
||||| || || | ||| || || || || || || || || ||||||||||| | ||
Sbjct 631974 GCAAAGATAAGTCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATCTTCGACTTC 631915
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| || | ||||||||| | || ||||| || || || ||||| || || || ||
Sbjct 631914 ACATTGTCGATGGTATCGCTGGACTCGACCTCAAGAGTGATCGTCTTTCCGGTCAGGGTC 631855
Query 104543 TTTACAAATATCTGCAT 104559
|| || || ||||||||
Sbjct 631854 TTCACGAAGATCTGCAT 631838
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151350410794124
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |