Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12-
21] 3,253 sequences; 60,403,714 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq8 105 6e-18
seq1388 95.1 1e-14
seq3070 87.8 2e-12
seq19 87.8 2e-12
>seq8
Length=1068389
Score = 105 bits (116), Expect = 6e-18
Identities = 141/194 (73%), Gaps = 4/194 (2%)
Strand=Plus/Minus
Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594
||| || || |||||||| |||| || ||| | ||||| |||||||| ||| || |
Sbjct 631801 CTCTTTCTGGATGTTGTAGTCAGACAGGGTTCGACCATCCTCAAGCTGCTTTCCGGCGAA 631742
Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TA 48652
|| | |||||||||||| || | | ||||||||| ||| ||| ||||| |
Sbjct 631741 GATGAGTCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGAATCTTCGACTTGACGTT 631682
Query 48653 GACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTC 48712
| || |||||||| | |||||| ||||| || || || ||||||||||| || ||
Sbjct 631681 GTCG--ATGGTATCAGATGACTCCACCTCGAGGGTGATAGTCTTACCGGTGAGGGTCTTG 631624
Query 48713 ACAAAAATCTGCAT 48726
||||| ||||||||
Sbjct 631623 ACAAAGATCTGCAT 631610
Score = 82.4 bits (90), Expect = 6e-11
Identities = 142/204 (70%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582
||||| || |||||| || ||||||||||| || | || || | |||||||||||
Sbjct 632040 TGAAGGGTAGACTCCTTCTGGATGTTGTAATC-GCTCAGGGTGCGACCATCCTCCAGCTG 631982
Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642
|||||| | | || | |||||||| || || | | ||||||||| ||| ||
Sbjct 631981 CTTACCAGCAAAGATAAGTCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATCTT 631922
Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702
| ||| | | | ||||||||| | ||||| ||| | || || || || |||||
Sbjct 631921 CGACTTCACATTGTCGATGGTATCGCTGGACTCGACCTCAAGAGTGATCGTCTTTCCGGT 631862
Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726
|| || ||||| || ||||||||
Sbjct 631861 CAGGGTCTTCACGAAGATCTGCAT 631838
>seq1388
Length=1638
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576
||| | |||||| || ||| || || ||||||||||| | | || |||||||
Sbjct 319 CACAAGATGAAGAGTAGACTCTTTCTGGATGTTGTAATCGGAGAGGGTGCGACCGTCCTC 378
Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636
||||||||||| || | || | ||| ||||| ||| || | || ||||||||||
Sbjct 379 AAGCTGCTTACCAGCGAAGATGAGACGTTGCTGGTCCGGAGGAATACCTTCCTTGTCCTG 438
Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696
|||||| ||| | | | | |||||||| | || ||| || | || || || ||
Sbjct 439 AATTTTAGTCTTCACATTCTCAATGGTATCCGAGGATTCCACTTCAAGGGTGATCGTCTT 498
Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
||| || ||||||||||| || || |||||
Sbjct 499 ACCAGTCAGAGTTTTCACGAATATTTGCAT 528
Score = 91.5 bits (100), Expect = 1e-13
Identities = 144/204 (71%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTG 48582
||||| || ||| || || ||||||||||| | | | || || ||||||| |||||
Sbjct 98 TGAAGAGTAGACTCTTTCTGGATGTTGTAATCGGAAAGAGTG-CGACCGTCCTCGAGCTG 156
Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642
||||||| || | || | ||||||||| ||| || | | |||||| ||| ||| ||
Sbjct 157 CTTACCGGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCTTCCTTATCCTGAATCTT 216
Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702
||||| | | || || |||| || ||| ||| | || ||||| || || ||
Sbjct 217 AGTCTTGACGTTCTCAATAGTGTCGGAGGATTCCACCTCAAGAGTAATGGTCTTTCCAGT 276
Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726
|| || ||||| |||||||||||
Sbjct 277 AAGGGTCTTCACGAAAATCTGCAT 300
>seq3070
Length=537
Score = 87.8 bits (96), Expect = 2e-12
Identities = 152/216 (70%), Gaps = 4/216 (2%)
Strand=Plus/Minus
Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCT 48575
||| | ||| || || |||||| ||||||||||| || | || | || || || ||||
Sbjct 234 CACAAGATGTAGAGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTG-CGGTCATCCT 176
Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635
|||| ||||| || | | || | |||||||||||| || | | ||||||||||
Sbjct 175 CCAGTTGCTTTCCCGCAAAGATGAGGCGCTGCTGATCCGGAGGAATTCCTTCCTTGTCCT 116
Query 48636 TAATTTTCTGCTTGATAGACGCT-ATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694
||| || ||| | | ||| ||| |||||| ||||| |||| || || ||
Sbjct 115 GAATCTTGGTCTTCACA-TTGCTGATGCTATCGGATGACTCTACTTCGAGAGTGATAGTC 57
Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730
|| ||||| || ||||| || || ||||||||| ||
Sbjct 56 TTTCCGGTTAGCGTTTTGACGAAGATCTGCATCTTG 21
>seq19
Length=502728
Score = 87.8 bits (96), Expect = 2e-12
Identities = 154/220 (70%), Gaps = 6/220 (3%)
Strand=Plus/Plus
Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCT 48575
||| || || || ||||||||||| || |||||||| || || | || || | ||||
Sbjct 172591 CACCAAGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGC-CATCCT 172649
Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635
| ||||||||||| | | || | |||||||| ||| || | | |||||||||
Sbjct 172650 CGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCT 172709
Query 48636 TAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGT 48693
|| || ||||| | | || ||||| |||| ||||||| ||| | || || ||
Sbjct 172710 GGATCTTGGACTTGACGTTGTCG--ATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGT 172767
Query 48694 TTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTGTCT 48733
|| || ||||| || || || || ||||||||| || ||
Sbjct 172768 CTTCCCCGTGAGGGTCTTGACGAAGATCTGCATCTTGCCT 172807
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421234499101253
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |