Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12- 21] 3,253 sequences; 60,403,714 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq8 105 6e-18 seq1388 95.1 1e-14 seq3070 87.8 2e-12 seq19 87.8 2e-12 >seq8 Length=1068389 Score = 105 bits (116), Expect = 6e-18 Identities = 141/194 (73%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 ||| || || |||||||| |||| || ||| | ||||| |||||||| ||| || | Sbjct 631801 CTCTTTCTGGATGTTGTAGTCAGACAGGGTTCGACCATCCTCAAGCTGCTTTCCGGCGAA 631742 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TA 48652 || | |||||||||||| || | | ||||||||| ||| ||| ||||| | Sbjct 631741 GATGAGTCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGAATCTTCGACTTGACGTT 631682 Query 48653 GACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTC 48712 | || |||||||| | |||||| ||||| || || || ||||||||||| || || Sbjct 631681 GTCG--ATGGTATCAGATGACTCCACCTCGAGGGTGATAGTCTTACCGGTGAGGGTCTTG 631624 Query 48713 ACAAAAATCTGCAT 48726 ||||| |||||||| Sbjct 631623 ACAAAGATCTGCAT 631610 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 ||||| || |||||| || ||||||||||| || | || || | ||||||||||| Sbjct 632040 TGAAGGGTAGACTCCTTCTGGATGTTGTAATC-GCTCAGGGTGCGACCATCCTCCAGCTG 631982 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 |||||| | | || | |||||||| || || | | ||||||||| ||| || Sbjct 631981 CTTACCAGCAAAGATAAGTCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATCTT 631922 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 | ||| | | | ||||||||| | ||||| ||| | || || || || ||||| Sbjct 631921 CGACTTCACATTGTCGATGGTATCGCTGGACTCGACCTCAAGAGTGATCGTCTTTCCGGT 631862 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 || || ||||| || |||||||| Sbjct 631861 CAGGGTCTTCACGAAGATCTGCAT 631838 >seq1388 Length=1638 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| | |||||| || ||| || || ||||||||||| | | || ||||||| Sbjct 319 CACAAGATGAAGAGTAGACTCTTTCTGGATGTTGTAATCGGAGAGGGTGCGACCGTCCTC 378 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 ||||||||||| || | || | ||| ||||| ||| || | || |||||||||| Sbjct 379 AAGCTGCTTACCAGCGAAGATGAGACGTTGCTGGTCCGGAGGAATACCTTCCTTGTCCTG 438 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 |||||| ||| | | | | |||||||| | || ||| || | || || || || Sbjct 439 AATTTTAGTCTTCACATTCTCAATGGTATCCGAGGATTCCACTTCAAGGGTGATCGTCTT 498 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| || ||||||||||| || || ||||| Sbjct 499 ACCAGTCAGAGTTTTCACGAATATTTGCAT 528 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTG 48582 ||||| || ||| || || ||||||||||| | | | || || ||||||| ||||| Sbjct 98 TGAAGAGTAGACTCTTTCTGGATGTTGTAATCGGAAAGAGTG-CGACCGTCCTCGAGCTG 156 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||||||| || | || | ||||||||| ||| || | | |||||| ||| ||| || Sbjct 157 CTTACCGGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCTTCCTTATCCTGAATCTT 216 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||||| | | || || |||| || ||| ||| | || ||||| || || || Sbjct 217 AGTCTTGACGTTCTCAATAGTGTCGGAGGATTCCACCTCAAGAGTAATGGTCTTTCCAGT 276 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 || || ||||| ||||||||||| Sbjct 277 AAGGGTCTTCACGAAAATCTGCAT 300 >seq3070 Length=537 Score = 87.8 bits (96), Expect = 2e-12 Identities = 152/216 (70%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCT 48575 ||| | ||| || || |||||| ||||||||||| || | || | || || || |||| Sbjct 234 CACAAGATGTAGAGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTG-CGGTCATCCT 176 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 |||| ||||| || | | || | |||||||||||| || | | |||||||||| Sbjct 175 CCAGTTGCTTTCCCGCAAAGATGAGGCGCTGCTGATCCGGAGGAATTCCTTCCTTGTCCT 116 Query 48636 TAATTTTCTGCTTGATAGACGCT-ATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 ||| || ||| | | ||| ||| |||||| ||||| |||| || || || Sbjct 115 GAATCTTGGTCTTCACA-TTGCTGATGCTATCGGATGACTCTACTTCGAGAGTGATAGTC 57 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 || ||||| || ||||| || || ||||||||| || Sbjct 56 TTTCCGGTTAGCGTTTTGACGAAGATCTGCATCTTG 21 >seq19 Length=502728 Score = 87.8 bits (96), Expect = 2e-12 Identities = 154/220 (70%), Gaps = 6/220 (3%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCT 48575 ||| || || || ||||||||||| || |||||||| || || | || || | |||| Sbjct 172591 CACCAAGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGC-CATCCT 172649 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 | ||||||||||| | | || | |||||||| ||| || | | ||||||||| Sbjct 172650 CGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCT 172709 Query 48636 TAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGT 48693 || || ||||| | | || ||||| |||| ||||||| ||| | || || || Sbjct 172710 GGATCTTGGACTTGACGTTGTCG--ATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGT 172767 Query 48694 TTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTGTCT 48733 || || ||||| || || || || ||||||||| || || Sbjct 172768 CTTCCCCGTGAGGGTCTTGACGAAGATCTGCATCTTGCCT 172807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421234499101253