Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12-
21] 3,253 sequences; 60,403,714 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq1388 118 1e-21
seq8 114 1e-20
seq3070 102 7e-17
seq19 100 3e-16
>seq1388
Length=1638
Score = 118 bits (130), Expect = 1e-21
Identities = 148/203 (73%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 94805 TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGT 94864
|||||||| |||||||| || | ||| || || | ||| | |||||| || ||
Sbjct 554 TGCAAAGTGGATTCCTTCTGAATGTTGTAGTCAGAAAGGGTGCGGCCATCCTCGAGTTGC 613
Query 94865 TTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTT 94924
||||| | ||||| | | ||||||||| || || |||||||| ||||| | ||| ||
Sbjct 614 TTTCCAGCGAAGATAAGACGTTGCTGATCCGGGGGGATACCTTCCTTGTCTTGAATCTTA 673
Query 94925 GCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTA 94984
| ||| ||| ||| || |||| | ||||| |||| || ||||| |||||||||
Sbjct 674 GTCTTCACGTTCTCGATGGTATCAGAGGATTCGACTTCAAGAGTAATGGTCTTTCCAGTA 733
Query 94985 AGAGTTTTCACAAAGATCTGCAT 95007
||||| || ||||| ||||||||
Sbjct 734 AGAGTCTTGACAAAAATCTGCAT 756
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857
||| | ||| | |||||| || || || | ||| |||||| | |||| |||||
Sbjct 91 CACAAGGTGAAGAGTAGACTCTTTCTGGATGTTGTAATCGGAAAGAGTGCGACCGTCCTC 150
Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917
||||| || ||| | ||||| | | ||||| || || || || ||||| || || |
Sbjct 151 GAGCTGCTTACCGGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCTTCCTTATCCTG 210
Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977
||| || | ||||||| | | |||||| | | || || |||| || ||||| ||
Sbjct 211 AATCTTAGTCTTGACGTTCTCAATAGTGTCGGAGGATTCCACCTCAAGAGTAATGGTCTT 270
Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||||||||| || ||||| || ||||||||
Sbjct 271 TCCAGTAAGGGTCTTCACGAAAATCTGCAT 300
Score = 91.5 bits (100), Expect = 1e-13
Identities = 148/210 (70%), Gaps = 5/210 (2%)
Strand=Plus/Plus
Query 94801 CAAG-TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA--TCCTC 94857
|||| || | |||||| || || || | ||| |||||| | || || || |||||
Sbjct 321 CAAGATGAAGAGTAGACTCTTTCTGGATGTTGTAATCGG--AGAGGGTGCGACCGTCCTC 378
Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917
||||| || || | ||||| | | |||||| || |||||||||||||| ||||| |
Sbjct 379 AAGCTGCTTACCAGCGAAGATGAGACGTTGCTGGTCCGGAGGAATACCTTCCTTGTCCTG 438
Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977
|||||| | ||| || | | || || | | || || |||| ||||| || ||
Sbjct 439 AATTTTAGTCTTCACATTCTCAATGGTATCCGAGGATTCCACTTCAAGGGTGATCGTCTT 498
Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||||| ||||||||||| || || |||||
Sbjct 499 ACCAGTCAGAGTTTTCACGAATATTTGCAT 528
Score = 86.0 bits (94), Expect = 6e-12
Identities = 112/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912
|| || ||||| || || | || || | || |||||| || || ||||||||||| |||
Sbjct 1148 TCTTCGAGCTGCTTGCCAGCGAAAATGAGTCGTTGCTGGTCCGGGGGAATACCTTCCTTG 1207
Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972
|| | |||||| | ||| ||| ||| |||||| | | || || |||| ||||||
Sbjct 1208 TCCTGAATTTTGGTCTTAACGTTCTCGATAGTGTCGGAGGACTCAACTTCAAGAGTGATG 1267
Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| ||||| || | || || || || ||||||||
Sbjct 1268 GTCTTTCCGGTTAAGGTCTTGACGAAAATCTGCAT 1302
>seq8
Length=1068389
Score = 114 bits (126), Expect = 1e-20
Identities = 154/211 (73%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858
|||| ||| | ||||| ||||| || | ||| |||||||||| ||| |||||||
Sbjct 632046 ACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCATCCTCC 631987
Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918
||||| || || ||||||| | || ||||| || || ||||| || || ||||| | |
Sbjct 631986 AGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGA 631927
Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG--TCGACGTCAATCGTGATGGTTT 94976
|| || | ||| || | ||| || || || ||| ||||| |||| ||||| || |
Sbjct 631926 ATCTTCGACTTCACATTGTCGATGGTATC-GC-TGGACTCGACCTCAAGAGTGATCGTCT 631869
Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|||| || || || ||||| |||||||||||
Sbjct 631868 TTCCGGTCAGGGTCTTCACGAAGATCTGCAT 631838
Score = 100 bits (110), Expect = 3e-16
Identities = 150/211 (71%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCT 94856
|||| ||| | |||||| || || || | ||| || || || | ||| || |||||
Sbjct 631818 ACCAGGTGTAGAGTAGACTCTTTCTGGATGTTGTAGTCAGACA--GGGTTCGACCATCCT 631761
Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916
| ||||| |||||| | ||||| | || |||||||| || ||||| || || ||||| |
Sbjct 631760 CAAGCTGCTTTCCGGCGAAGATGAGTCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCT 631701
Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976
||| || | ||||||| | ||| || |||| || || || | ||||| || |
Sbjct 631700 GAATCTTCGACTTGACGTTGTCGATGGTATCAGATGACTCCACCTCGAGGGTGATAGTCT 631641
Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
| || || || || || ||||||||||||||
Sbjct 631640 TACCGGTGAGGGTCTTGACAAAGATCTGCAT 631610
>seq3070
Length=537
Score = 102 bits (112), Expect = 7e-17
Identities = 148/208 (71%), Gaps = 1/208 (0%)
Strand=Plus/Minus
Query 94801 CAAG-TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCA 94859
|||| || | |||||| ||||| || | ||| || ||| || |||| | ||||||||
Sbjct 232 CAAGATGTAGAGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGGTCATCCTCCA 173
Query 94860 GCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAA 94919
| || ||||| ||||||| | | |||||||| |||||||| ||||| ||||| | ||
Sbjct 172 GTTGCTTTCCCGCAAAGATGAGGCGCTGCTGATCCGGAGGAATTCCTTCCTTGTCCTGAA 113
Query 94920 TTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTC 94979
| || | ||| || || || | || | || || || | ||||| || ||||
Sbjct 112 TCTTGGTCTTCACATTGCTGATGCTATCGGATGACTCTACTTCGAGAGTGATAGTCTTTC 53
Query 94980 CAGTAAGAGTTTTCACAAAGATCTGCAT 95007
| || || ||||| || |||||||||||
Sbjct 52 CGGTTAGCGTTTTGACGAAGATCTGCAT 25
>seq19
Length=502728
Score = 100 bits (110), Expect = 3e-16
Identities = 148/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857
||||||||| | ||| ||||| || | ||| || ||||||| |||| | ||||||
Sbjct 172591 CACCAAGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCATCCTC 172650
Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917
||||| || || ||||||| | || ||||| || || || || || || ||||| |
Sbjct 172651 GAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 172710
Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977
|| || | ||||||| | ||| ||||| | || || |||| ||||| || ||
Sbjct 172711 GATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTT 172770
Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| || || || || || |||||||||||
Sbjct 172771 CCCCGTGAGGGTCTTGACGAAGATCTGCAT 172800
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448272971359080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |