Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12- 21] 3,253 sequences; 60,403,714 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq1388 118 1e-21 seq8 114 1e-20 seq3070 102 7e-17 seq19 100 3e-16 >seq1388 Length=1638 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 94805 TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGT 94864 |||||||| |||||||| || | ||| || || | ||| | |||||| || || Sbjct 554 TGCAAAGTGGATTCCTTCTGAATGTTGTAGTCAGAAAGGGTGCGGCCATCCTCGAGTTGC 613 Query 94865 TTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTT 94924 ||||| | ||||| | | ||||||||| || || |||||||| ||||| | ||| || Sbjct 614 TTTCCAGCGAAGATAAGACGTTGCTGATCCGGGGGGATACCTTCCTTGTCTTGAATCTTA 673 Query 94925 GCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTA 94984 | ||| ||| ||| || |||| | ||||| |||| || ||||| ||||||||| Sbjct 674 GTCTTCACGTTCTCGATGGTATCAGAGGATTCGACTTCAAGAGTAATGGTCTTTCCAGTA 733 Query 94985 AGAGTTTTCACAAAGATCTGCAT 95007 ||||| || ||||| |||||||| Sbjct 734 AGAGTCTTGACAAAAATCTGCAT 756 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||| | ||| | |||||| || || || | ||| |||||| | |||| ||||| Sbjct 91 CACAAGGTGAAGAGTAGACTCTTTCTGGATGTTGTAATCGGAAAGAGTGCGACCGTCCTC 150 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 ||||| || ||| | ||||| | | ||||| || || || || ||||| || || | Sbjct 151 GAGCTGCTTACCGGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCTTCCTTATCCTG 210 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||| || | ||||||| | | |||||| | | || || |||| || ||||| || Sbjct 211 AATCTTAGTCTTGACGTTCTCAATAGTGTCGGAGGATTCCACCTCAAGAGTAATGGTCTT 270 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||||||| || ||||| || |||||||| Sbjct 271 TCCAGTAAGGGTCTTCACGAAAATCTGCAT 300 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/210 (70%), Gaps = 5/210 (2%) Strand=Plus/Plus Query 94801 CAAG-TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA--TCCTC 94857 |||| || | |||||| || || || | ||| |||||| | || || || ||||| Sbjct 321 CAAGATGAAGAGTAGACTCTTTCTGGATGTTGTAATCGG--AGAGGGTGCGACCGTCCTC 378 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 ||||| || || | ||||| | | |||||| || |||||||||||||| ||||| | Sbjct 379 AAGCTGCTTACCAGCGAAGATGAGACGTTGCTGGTCCGGAGGAATACCTTCCTTGTCCTG 438 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 |||||| | ||| || | | || || | | || || |||| ||||| || || Sbjct 439 AATTTTAGTCTTCACATTCTCAATGGTATCCGAGGATTCCACTTCAAGGGTGATCGTCTT 498 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| ||||||||||| || || ||||| Sbjct 499 ACCAGTCAGAGTTTTCACGAATATTTGCAT 528 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || || ||||| || || | || || | || |||||| || || ||||||||||| ||| Sbjct 1148 TCTTCGAGCTGCTTGCCAGCGAAAATGAGTCGTTGCTGGTCCGGGGGAATACCTTCCTTG 1207 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | |||||| | ||| ||| ||| |||||| | | || || |||| |||||| Sbjct 1208 TCCTGAATTTTGGTCTTAACGTTCTCGATAGTGTCGGAGGACTCAACTTCAAGAGTGATG 1267 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || ||||| || | || || || || |||||||| Sbjct 1268 GTCTTTCCGGTTAAGGTCTTGACGAAAATCTGCAT 1302 >seq8 Length=1068389 Score = 114 bits (126), Expect = 1e-20 Identities = 154/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||| ||| | ||||| ||||| || | ||| |||||||||| ||| ||||||| Sbjct 632046 ACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCATCCTCC 631987 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 ||||| || || ||||||| | || ||||| || || ||||| || || ||||| | | Sbjct 631986 AGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGA 631927 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG--TCGACGTCAATCGTGATGGTTT 94976 || || | ||| || | ||| || || || ||| ||||| |||| ||||| || | Sbjct 631926 ATCTTCGACTTCACATTGTCGATGGTATC-GC-TGGACTCGACCTCAAGAGTGATCGTCT 631869 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| || || || ||||| ||||||||||| Sbjct 631868 TTCCGGTCAGGGTCTTCACGAAGATCTGCAT 631838 Score = 100 bits (110), Expect = 3e-16 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCT 94856 |||| ||| | |||||| || || || | ||| || || || | ||| || ||||| Sbjct 631818 ACCAGGTGTAGAGTAGACTCTTTCTGGATGTTGTAGTCAGACA--GGGTTCGACCATCCT 631761 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 | ||||| |||||| | ||||| | || |||||||| || ||||| || || ||||| | Sbjct 631760 CAAGCTGCTTTCCGGCGAAGATGAGTCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCT 631701 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 ||| || | ||||||| | ||| || |||| || || || | ||||| || | Sbjct 631700 GAATCTTCGACTTGACGTTGTCGATGGTATCAGATGACTCCACCTCGAGGGTGATAGTCT 631641 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || || || |||||||||||||| Sbjct 631640 TACCGGTGAGGGTCTTGACAAAGATCTGCAT 631610 >seq3070 Length=537 Score = 102 bits (112), Expect = 7e-17 Identities = 148/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 94801 CAAG-TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCA 94859 |||| || | |||||| ||||| || | ||| || ||| || |||| | |||||||| Sbjct 232 CAAGATGTAGAGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGGTCATCCTCCA 173 Query 94860 GCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAA 94919 | || ||||| ||||||| | | |||||||| |||||||| ||||| ||||| | || Sbjct 172 GTTGCTTTCCCGCAAAGATGAGGCGCTGCTGATCCGGAGGAATTCCTTCCTTGTCCTGAA 113 Query 94920 TTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTC 94979 | || | ||| || || || | || | || || || | ||||| || |||| Sbjct 112 TCTTGGTCTTCACATTGCTGATGCTATCGGATGACTCTACTTCGAGAGTGATAGTCTTTC 53 Query 94980 CAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || ||||| || ||||||||||| Sbjct 52 CGGTTAGCGTTTTGACGAAGATCTGCAT 25 >seq19 Length=502728 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||||||| | ||| ||||| || | ||| || ||||||| |||| | |||||| Sbjct 172591 CACCAAGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCATCCTC 172650 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 ||||| || || ||||||| | || ||||| || || || || || || ||||| | Sbjct 172651 GAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 172710 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || || | ||||||| | ||| ||||| | || || |||| ||||| || || Sbjct 172711 GATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTT 172770 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || || ||||||||||| Sbjct 172771 CCCCGTGAGGGTCTTGACGAAGATCTGCAT 172800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448272971359080