Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12- 21] 3,253 sequences; 60,403,714 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq5 206 3e-48 seq6 100 4e-16 >seq5 Length=1316942 Score = 206 bits (228), Expect = 3e-48 Identities = 468/698 (67%), Gaps = 12/698 (2%) Strand=Plus/Minus Query 63168 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 63227 ||||| || || | || ||||||| | ||| || |||| | || || || ||||| Sbjct 714295 CCAGGGCACTCGTTGGGGCACATCAGAGTCCAATCGCCGTTCTTCTCAACCCGCTTCATG 714236 Query 63228 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 63287 ||||||||||| |||||||| |||| || ||||| | || | || || || || Sbjct 714235 AAGAGATCAGGGATCCAAAGGGCTAGGAAAAGATCGCGGGCGCGGACCTCTTCCTTGCCG 714176 Query 63288 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 63347 ||||| || || |||||| | | | ||| | ||||| || || | ||| ||| Sbjct 714175 TGGTTCTTGCGCAGGTCCAGGAACTCGAAGACATCCGCGTGCCAGGGCTCGAGGTAGATG 714116 Query 63348 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 63407 || | | | || || || ||||| || ||||| || | ||||| ||| ||||| || | Sbjct 714115 GCGAAAGCACCCGGTCGCTTGTTGCCACCCTGGTCGACGTATCGAGCAGTGTTGTTGAAG 714056 Query 63408 ACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCA 63467 || | | ||| ||||| | |||||| || |||| |||||||||| || || ||| Sbjct 714055 ACACGGAGCATGGGAATGACACCGTTGGAGGTACCGTTGGTACCGGCAATGTAAGAGCCA 713996 Query 63468 CTGGCACGAATATTACTAATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGC 63526 ||||||| ||| | | | | ||||| || || || ||||| || ||||| | || Sbjct 713995 GTGGCACGGATACGG-TGAGCGTTGAGACCGATACCGCCAGCCATCTTGGAGATCATGGC 713937 Query 63527 GCATCGTTTTAAC-GTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAA 63585 || ||| || | ||||||||||||||||| |||||||| || |||||| || || | Sbjct 713936 ACA-CGTCTTGAGAGTGTCATAGATACCCTCGATGCTATCCTCCTTCATGTCAACCAGGA 713878 Query 63586 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 63645 | ||| ||||| ||| | || || || || || || | ||| || ||||| || | Sbjct 713877 AGCAGGAAGACAGCTGGGGCTGAGGGGTACCAGCGTTGAAAAGGGTGGGCGAAGCATGGG 713818 Query 63646 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC----CCAT 63701 ||||| || || | || ||||| ||||| | | || || || || Sbjct 713817 TAAACAGCTTGCTGGACATGAGGTTGTAGGTCTCCAGGACACGCTCAATGTCATCGCCCC 713758 Query 63702 TGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTG 63761 |||| || || | |||||||| | ||||||||| |||| ||||| |||||| | Sbjct 713757 AGATG----CCAACAGACACACGCATGATCATGTGCTGCGGTCGCTCAACAATCTTGCCG 713702 Query 63762 TTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 63821 | || || | | || ||| |||| ||| || ||||| || || | ||| ||| Sbjct 713701 TCAATCTTGAGGAGATAAGATCGCTCCAGAGTCTTGAAACCGAAGTATTGGTAGTTGAAG 713642 Query 63822 TCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 63859 || || || || | ||| | |||| ||| | ||||| Sbjct 713641 TCGCGGTCATACACAATCGCGGAGTCGAGCTCCTCCTT 713604 >seq6 Length=1299473 Score = 100 bits (110), Expect = 4e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || ||||| || ||| || ||||| || | | ||| || |||||||| || || || Sbjct 1188845 CAGGCGAAGTCAGTGTGAAGGCCCTCATCACGAGAAATCAGCTCGTTGGAGAAGGTCAGG 1188904 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 || ||||| ||||||||||| || ||||| || |||||||| || | || |||||| Sbjct 1188905 CCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCGCTGAAGAAG 1188964 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAA 33448 || || || || ||||||||||||| Sbjct 1188965 ATACCCTCAACAGCAGCAAAGGCAA 1188989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622921869409480