Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12- 21] 3,253 sequences; 60,403,714 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq5 89.7 5e-13 >seq5 Length=1316942 Score = 89.7 bits (98), Expect = 5e-13 Identities = 328/500 (66%), Gaps = 23/500 (5%) Strand=Plus/Minus Query 148250 CTCGTAATTTTCGTAAAGGTCCTCGAATTCTTGGCCATAGCAATCGTTTAAACCGGGACA 148309 |||||| || ||||| | | ||||||| || | ||| ||||| ||| | || || || Sbjct 714347 CTCGTACTTCTCGTATAAGGCCTCGAACTCCTCGCCGTAGCAGTCGGCAAGGCCAGGGCA 714288 Query 148310 CTCGTCGGGGCACATCAATGACC-ATTTCCCTCCTGTCTTTACCCTCTTCATAAACAGAT 148368 ||||| ||||||||||| | || || || | || ||| |||| |||||| || |||| Sbjct 714287 CTCGTTGGGGCACATCAGAGTCCAATCGCCGTTCT-TCTCAACCCGCTTCATGAAGAGAT 714229 Query 148369 CAGGTGTCCACATGGCAAAAAGAAGATCGCGAGC-----CTTCATATCCTCGGCACCCAT 148423 |||| |||| | ||| | | ||||||||| || | || |||| | | | Sbjct 714228 CAGGGATCCAAAGGGCTAGGAAAAGATCGCGGGCGCGGACCTC--TTCCTTGCCGTGGTT 714171 Query 148424 ATTGCGCTTTAGATCCaaaaaagtaaaaaCGTCTGCGTGCCAAGGCTCGATGTATACGGT 148483 |||||| || |||| || || || || |||||||| ||||||| ||| | || Sbjct 714170 CTTGCGC---AGGTCCAGGAACTCGAAGACATCCGCGTGCCAGGGCTCGAGGTAGATGGC 714114 Query 148484 CATGGCGCC---TTTCCTTTTACCTCCTTGATCGACATGGCGTAGCA-TGCTATTAAAAA 148539 | || || | | | || || || || ||||| | || |||| || | || || | Sbjct 714113 GAAAGCACCCGGTCGCTTGTTGCCACCCTGGTCGACGTATCG-AGCAGTGTTGTTGAAGA 714055 Query 148540 CACGCAATGCA-GGTCCCAATCCCGCCGCA-GTTCCGTTTGTGGATTCAATTTTACTATT 148597 |||| | ||| || | ||| | | || ||||| || |||| | | Sbjct 714054 CACGGA--GCATGGGAATGACACCGTTGGAGGTACCGTTGGTACCGGCAATGTAAGAGCC 713997 Query 148598 GGTGGCGCGAATTTGAGTGA-CATTCAGGCCGATGCCGCCTCCGTGTTTAGATATCATGG 148656 ||||| || || | |||| | || || ||||| ||||| | || || ||||||| Sbjct 713996 AGTGGCACGGATACG-GTGAGCGTTGAGACCGATACCGCCAGCCATCTTGGAGATCATGG 713938 Query 148657 CACAATCGTTGAGTGTTTTATAGATGCCGTTAATACTGTCCTCTTGAATGTTAAGCAGGT 148716 |||| ||||| || | |||||| || | || || ||||| | |||| || |||| Sbjct 713937 CACACGTCTTGAGAGTGTCATAGATACCCTCGATGCTATCCTCCTTCATGTCAACCAGGA 713878 Query 148717 AGCACGATGACATTTGAGGC 148736 |||| || |||| || ||| Sbjct 713877 AGCAGGAAGACAGCTGGGGC 713858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478642936390160