Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12-
21] 3,253 sequences; 60,403,714 total letters
Query= NC_008035.3
Length=126629
Score E
Sequences producing significant alignments: (Bits) Value
seq3070 105 5e-18
seq1388 100 2e-16
seq8 95.1 1e-14
>seq3070
Length=537
Score = 105 bits (116), Expect = 5e-18
Identities = 155/217 (71%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| || | ||| || || |||||||| || ||||||||||||| || || | | |||
Sbjct 236 AGCACAAGATGTAGAGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGGTCATCC 177
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843
|||| ||| || |||||| | || || ||||| || ||| ||| | || || |||||
Sbjct 176 TCCAGTTGCTTTCCCGCAAAGATGAGGCGCTGCTGATCCGGAGGAATTCCTTCCTTGTCC 117
Query 16844 GCAAT-TTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGT 16902
||| ||| | |||||| | || | | ||| | ||| ||| | ||||| ||
Sbjct 116 TGAATCTTGGT-CTTCACATTGCTGATGCTATCGGATGACTCTACTTCGAGAGTGATAGT 58
Query 16903 TTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939
|||||||| ||||||||||| || |||||||| |||
Sbjct 57 CTTTCCGGTTAGCGTTTTGACGAAGATCTGCATCTTG 21
>seq1388
Length=1638
Score = 100 bits (110), Expect = 2e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| || || || | ||| || | ||| || || || |||||||| ||||||||||| | |
Sbjct 758 CCGCCGCGAAGACGCAGCACGAGATGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAC 817
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| ||| ||||||| | ||| || || || | || || ||||| |||||| ||
Sbjct 818 AGGGTGCGACCGTCCTCAAGTTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGGGGG 877
Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888
| ||| || || || ||| | |||||| | | | ||||||| || ||| |
Sbjct 878 ATGCCTTCCTTATCCTGAATCTTAGTCTTCACGTTCTCGATAGTGTCGGAGGACTCAACT 937
Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936
|| | |||||||| |||||||| | || ||||| ||||||||||||
Sbjct 938 TCAAGAGTGATGGTCTTTCCGGTTAAGGTCTTGACGAAAATCTGCATT 985
Score = 89.7 bits (98), Expect = 4e-13
Identities = 142/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792
||||| ||||||||||| || || |||||||||| | || |||| || | ||
Sbjct 1100 TGCAGGGTGGACTCCTTCTGGATATTGTAGTCGGAAAGAGTGCGACCGTCTTCGAGCTGC 1159
Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852
||||| || |||| || || || |||||| || | || || ||||| |||||
Sbjct 1160 TTGCCAGCGAAAATGAGTCGTTGCTGGTCCGGGGGAATACCTTCCTTGTCCTGAATTTTG 1219
Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912
||| || | | | ||||||| || ||| ||| | |||||||| ||||||||
Sbjct 1220 GTCTTAACGTTCTCGATAGTGTCGGAGGACTCAACTTCAAGAGTGATGGTCTTTCCGGTT 1279
Query 16913 AGCGTTTTGACAAAAATCTGCATT 16936
| || ||||| ||||||||||||
Sbjct 1280 AAGGTCTTGACGAAAATCTGCATT 1303
>seq8
Length=1068389
Score = 95.1 bits (104), Expect = 1e-14
Identities = 148/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| |||| || || || |||||||| || |||||||| ||| || ||| | |||
Sbjct 632049 AGGACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCATCC 631990
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843
|||| || || || ||| | ||||| ||||| ||||| || | |||||| |||||
Sbjct 631989 TCCAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCC 631930
Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903
||| | | |||||| | | | | || |||| || ||| || | ||||| ||
Sbjct 631929 TGAATCTTCGACTTCACATTGTCGATGGTATCGCTGGACTCGACCTCAAGAGTGATCGTC 631870
Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
||||||||||| || || || || ||||||||
Sbjct 631869 TTTCCGGTCAGGGTCTTCACGAAGATCTGCAT 631838
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 405071939906470
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |