Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12- 21] 3,253 sequences; 60,403,714 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq3070 105 5e-18 seq1388 100 2e-16 seq8 95.1 1e-14 >seq3070 Length=537 Score = 105 bits (116), Expect = 5e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | ||| || || |||||||| || ||||||||||||| || || | | ||| Sbjct 236 AGCACAAGATGTAGAGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGGTCATCC 177 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 |||| ||| || |||||| | || || ||||| || ||| ||| | || || ||||| Sbjct 176 TCCAGTTGCTTTCCCGCAAAGATGAGGCGCTGCTGATCCGGAGGAATTCCTTCCTTGTCC 117 Query 16844 GCAAT-TTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGT 16902 ||| ||| | |||||| | || | | ||| | ||| ||| | ||||| || Sbjct 116 TGAATCTTGGT-CTTCACATTGCTGATGCTATCGGATGACTCTACTTCGAGAGTGATAGT 58 Query 16903 TTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 |||||||| ||||||||||| || |||||||| ||| Sbjct 57 CTTTCCGGTTAGCGTTTTGACGAAGATCTGCATCTTG 21 >seq1388 Length=1638 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| || | ||| || || || |||||||| ||||||||||| | | Sbjct 758 CCGCCGCGAAGACGCAGCACGAGATGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAC 817 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| ||||||| | ||| || || || | || || ||||| |||||| || Sbjct 818 AGGGTGCGACCGTCCTCAAGTTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGGGGG 877 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||| || || || ||| | |||||| | | | ||||||| || ||| | Sbjct 878 ATGCCTTCCTTATCCTGAATCTTAGTCTTCACGTTCTCGATAGTGTCGGAGGACTCAACT 937 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || | |||||||| |||||||| | || ||||| |||||||||||| Sbjct 938 TCAAGAGTGATGGTCTTTCCGGTTAAGGTCTTGACGAAAATCTGCATT 985 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 ||||| ||||||||||| || || |||||||||| | || |||| || | || Sbjct 1100 TGCAGGGTGGACTCCTTCTGGATATTGTAGTCGGAAAGAGTGCGACCGTCTTCGAGCTGC 1159 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||| || |||| || || || |||||| || | || || ||||| ||||| Sbjct 1160 TTGCCAGCGAAAATGAGTCGTTGCTGGTCCGGGGGAATACCTTCCTTGTCCTGAATTTTG 1219 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 ||| || | | | ||||||| || ||| ||| | |||||||| |||||||| Sbjct 1220 GTCTTAACGTTCTCGATAGTGTCGGAGGACTCAACTTCAAGAGTGATGGTCTTTCCGGTT 1279 Query 16913 AGCGTTTTGACAAAAATCTGCATT 16936 | || ||||| |||||||||||| Sbjct 1280 AAGGTCTTGACGAAAATCTGCATT 1303 >seq8 Length=1068389 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || |||||||| || |||||||| ||| || ||| | ||| Sbjct 632049 AGGACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCATCC 631990 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 |||| || || || ||| | ||||| ||||| ||||| || | |||||| ||||| Sbjct 631989 TCCAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCC 631930 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||| | | |||||| | | | | || |||| || ||| || | ||||| || Sbjct 631929 TGAATCTTCGACTTCACATTGTCGATGGTATCGCTGGACTCGACCTCAAGAGTGATCGTC 631870 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||||||||| || || || || |||||||| Sbjct 631869 TTTCCGGTCAGGGTCTTCACGAAGATCTGCAT 631838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405071939906470