Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12-
21] 3,253 sequences; 60,403,714 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq1023 114 9e-21
seq6 114 9e-21
seq1388 95.1 8e-15
>seq1023
Length=3215
Score = 114 bits (126), Expect = 9e-21
Identities = 82/93 (88%), Gaps = 6/93 (6%)
Strand=Plus/Plus
Query 25904 GCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGG-----GTAATCTCGTTA 25958
|||||||||| ||||||||||||||||||| || |||||||| | ||||||||||
Sbjct 929 GCCCGTTCCCCTGGCTGTGGTTTCGCTAGA-AGCAGATAGGGACAGTAGGAATCTCGTTA 987
Query 25959 ATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||| ||||||||||||||||||||||||||||
Sbjct 988 ATCCATTCATGCGCGTCACTAATTAGATGACGA 1020
Score = 89.7 bits (98), Expect = 3e-13
Identities = 74/90 (82%), Gaps = 3/90 (3%)
Strand=Plus/Plus
Query 19933 GGTTATTGTCATTTCTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTC 19992
|||| |||||| | |||| |||||||| ||||||| |||||||||||||||||||| |
Sbjct 2836 GGTTCTTGTCA---CCCTCTTTTCAAAGTGCTTTTCACCTTTCCCTCACGGTACTTGTGC 2892
Query 19993 GCTATCGGTCTCGCGGTAATATTTAGCCTT 20022
||||||||| || | |||||||||||
Sbjct 2893 GCTATCGGTTTCCTACCAGTATTTAGCCTT 2922
>seq6
Length=1299473
Score = 114 bits (126), Expect = 9e-21
Identities = 201/293 (69%), Gaps = 0/293 (0%)
Strand=Plus/Plus
Query 6195 GACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAAC 6254
|||| ||||| || ||||| ||| ||||||| | ||| | || || || ||||||
Sbjct 1127831 GACGTCTTCTATCGTTACAAGATGGAGCGCATCCAGACAAAGATTGAAGGCAAAGGAAAC 1127890
Query 6255 GGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCC 6314
|| || || |||||| | |||||| || |||||| || | || | || || |
Sbjct 1127891 GGCATCAAGACCGTCGTCGTCAACCTGAGCAGCGTCGCTCAGTCTCTTGCCCGTCCCGGT 1127950
Query 6315 ACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAA 6374
||||| | || || ||||| | ||| |||||||||||||| | |||| | |||
Sbjct 1127951 GCCTACGTCATCAAGTACTTCGGTTTCGAGCTTGGCGCTCAGACAAACATTGACCCCAAG 1128010
Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGAC 6434
|||| || | ||| | ||||| | || | |||||||||| ||||| || ||
Sbjct 1128011 GACGACCGTTGGATCATCAACGGCGCCCACGATGCTGCCAAGCTCCAGGATCACCTCGAT 1128070
Query 6435 GGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGA 6487
||||| || ||||||||| || || | | ||| | ||||| ||||||||
Sbjct 1128071 GGCTTCATCAACAAGTTTGTTCTCTGCAAGAAGTGCAAGAACCCCGAGACCGA 1128123
>seq1388
Length=1638
Score = 95.1 bits (104), Expect = 8e-15
Identities = 161/232 (69%), Gaps = 1/232 (0%)
Strand=Plus/Plus
Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145
|||| ||||| | | ||| | ||| | ||||||||| ||| || || || |||||||
Sbjct 298 CATT-CCACCACGTAGACGGAGCACAAGATGAAGAGTAGACTCTTTCTGGATGTTGTAAT 356
Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205
| || | || |||| || | || || || || || || || ||||| || || |
Sbjct 357 CGGAGAGGGTGCGACCGTCCTCAAGCTGCTTACCAGCGAAGATGAGACGTTGCTGGTCCG 416
Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265
|| | ||||| |||||| |||||| ||||||||||| | ||||| ||
Sbjct 417 GAGGAATACCTTCCTTGTCCTGAATTTTAGTCTTCACATTCTCAATGGTATCCGAGGATT 476
Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
| ||||| | || || || ||||| |||| |||||||||||||| |||||
Sbjct 477 CCACTTCAAGGGTGATCGTCTTACCAGTCAGAGTTTTCACGAATATTTGCAT 528
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334933920704243
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |