Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12- 21] 3,253 sequences; 60,403,714 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq1023 114 9e-21 seq6 114 9e-21 seq1388 95.1 8e-15 >seq1023 Length=3215 Score = 114 bits (126), Expect = 9e-21 Identities = 82/93 (88%), Gaps = 6/93 (6%) Strand=Plus/Plus Query 25904 GCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGG-----GTAATCTCGTTA 25958 |||||||||| ||||||||||||||||||| || |||||||| | |||||||||| Sbjct 929 GCCCGTTCCCCTGGCTGTGGTTTCGCTAGA-AGCAGATAGGGACAGTAGGAATCTCGTTA 987 Query 25959 ATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||| |||||||||||||||||||||||||||| Sbjct 988 ATCCATTCATGCGCGTCACTAATTAGATGACGA 1020 Score = 89.7 bits (98), Expect = 3e-13 Identities = 74/90 (82%), Gaps = 3/90 (3%) Strand=Plus/Plus Query 19933 GGTTATTGTCATTTCTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTC 19992 |||| |||||| | |||| |||||||| ||||||| |||||||||||||||||||| | Sbjct 2836 GGTTCTTGTCA---CCCTCTTTTCAAAGTGCTTTTCACCTTTCCCTCACGGTACTTGTGC 2892 Query 19993 GCTATCGGTCTCGCGGTAATATTTAGCCTT 20022 ||||||||| || | ||||||||||| Sbjct 2893 GCTATCGGTTTCCTACCAGTATTTAGCCTT 2922 >seq6 Length=1299473 Score = 114 bits (126), Expect = 9e-21 Identities = 201/293 (69%), Gaps = 0/293 (0%) Strand=Plus/Plus Query 6195 GACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAAC 6254 |||| ||||| || ||||| ||| ||||||| | ||| | || || || |||||| Sbjct 1127831 GACGTCTTCTATCGTTACAAGATGGAGCGCATCCAGACAAAGATTGAAGGCAAAGGAAAC 1127890 Query 6255 GGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCC 6314 || || || |||||| | |||||| || |||||| || | || | || || | Sbjct 1127891 GGCATCAAGACCGTCGTCGTCAACCTGAGCAGCGTCGCTCAGTCTCTTGCCCGTCCCGGT 1127950 Query 6315 ACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAA 6374 ||||| | || || ||||| | ||| |||||||||||||| | |||| | ||| Sbjct 1127951 GCCTACGTCATCAAGTACTTCGGTTTCGAGCTTGGCGCTCAGACAAACATTGACCCCAAG 1128010 Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGAC 6434 |||| || | ||| | ||||| | || | |||||||||| ||||| || || Sbjct 1128011 GACGACCGTTGGATCATCAACGGCGCCCACGATGCTGCCAAGCTCCAGGATCACCTCGAT 1128070 Query 6435 GGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGA 6487 ||||| || ||||||||| || || | | ||| | ||||| |||||||| Sbjct 1128071 GGCTTCATCAACAAGTTTGTTCTCTGCAAGAAGTGCAAGAACCCCGAGACCGA 1128123 >seq1388 Length=1638 Score = 95.1 bits (104), Expect = 8e-15 Identities = 161/232 (69%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||| | | ||| | ||| | ||||||||| ||| || || || ||||||| Sbjct 298 CATT-CCACCACGTAGACGGAGCACAAGATGAAGAGTAGACTCTTTCTGGATGTTGTAAT 356 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | || | || |||| || | || || || || || || || ||||| || || | Sbjct 357 CGGAGAGGGTGCGACCGTCCTCAAGCTGCTTACCAGCGAAGATGAGACGTTGCTGGTCCG 416 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 || | ||||| |||||| |||||| ||||||||||| | ||||| || Sbjct 417 GAGGAATACCTTCCTTGTCCTGAATTTTAGTCTTCACATTCTCAATGGTATCCGAGGATT 476 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | ||||| | || || || ||||| |||| |||||||||||||| ||||| Sbjct 477 CCACTTCAAGGGTGATCGTCTTACCAGTCAGAGTTTTCACGAATATTTGCAT 528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334933920704243