Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12-
21] 3,253 sequences; 60,403,714 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq5 194 2e-44
seq6 86.0 8e-12
>seq5
Length=1316942
Score = 194 bits (214), Expect = 2e-44
Identities = 467/701 (67%), Gaps = 12/701 (2%)
Strand=Plus/Minus
Query 63020 AGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTC 63079
|| ||||| || || | || ||||||| | ||| || |||| | || || || |||
Sbjct 714298 AGGCCAGGGCACTCGTTGGGGCACATCAGAGTCCAATCGCCGTTCTTCTCAACCCGCTTC 714239
Query 63080 ATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTT 63139
|| ||||||||||| |||||||| |||| || ||||| | || | || || ||
Sbjct 714238 ATGAAGAGATCAGGGATCCAAAGGGCTAGGAAAAGATCGCGGGCGCGGACCTCTTCCTTG 714179
Query 63140 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 63199
|| ||||| || || |||||| | | | ||| | ||||| || || | |||
Sbjct 714178 CCGTGGTTCTTGCGCAGGTCCAGGAACTCGAAGACATCCGCGTGCCAGGGCTCGAGGTAG 714119
Query 63200 ATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 63259
||||| | | | || || || ||||| || ||||| || | ||||| ||| ||||| ||
Sbjct 714118 ATGGCGAAAGCACCCGGTCGCTTGTTGCCACCCTGGTCGACGTATCGAGCAGTGTTGTTG 714059
Query 63260 TAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTT 63319
| || | | ||| ||||| | ||| ||||| ||||| ||||| || | || ||
Sbjct 714058 AAGACACGGAGCATGGGAATGACACCGTTGGAGGTACCGTTGGTACCGGCAATGTAAGAG 713999
Query 63320 CCACTGGCACGAATATTACTAATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAA 63378
||| ||||||| ||| | | | | ||||| || || || ||||| || ||||| |
Sbjct 713998 CCAGTGGCACGGATA-CGGTGAGCGTTGAGACCGATACCGCCAGCCATCTTGGAGATCAT 713940
Query 63379 TGCGCATCGT-TTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTA 63437
|| || ||| || | || |||||||| ||||| || ||||| ||| |||||| || |
Sbjct 713939 GGCACA-CGTCTTGAGAGTGTCATAGATACCCTCGATGCTATCCTCCTTCATGTCAACCA 713881
Query 63438 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 63497
| || ||| ||||| ||| | || || || || || || | ||| || ||||| |
Sbjct 713880 GGAAGCAGGAAGACAGCTGGGGCTGAGGGGTACCAGCGTTGAAAAGGGTGGGCGAAGCAT 713821
Query 63498 GAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC----C 63553
| |||||| || || | || ||||| ||||| | | || || || |
Sbjct 713820 GGGTAAACAGCTTGCTGGACATGAGGTTGTAGGTCTCCAGGACACGCTCAATGTCATCGC 713761
Query 63554 CATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTG 63613
| |||| || || | |||||||| | ||||||||| |||| ||||| ||||||
Sbjct 713760 CCCAGATG----CCAACAGACACACGCATGATCATGTGCTGCGGTCGCTCAACAATCTTG 713705
Query 63614 TTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAA 63673
|| || || | | || ||| |||| ||| || ||||| || || | |||
Sbjct 713704 CCGTCAATCTTGAGGAGATAAGATCGCTCCAGAGTCTTGAAACCGAAGTATTGGTAGTTG 713645
Query 63674 AAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 63714
||||| || || || | ||| | |||| ||| | |||||
Sbjct 713644 AAGTCGCGGTCATACACAATCGCGGAGTCGAGCTCCTCCTT 713604
>seq6
Length=1299473
Score = 86.0 bits (94), Expect = 8e-12
Identities = 106/145 (73%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720
|| ||||| || ||| || ||||| || | | ||| | |||||||| || || ||
Sbjct 1188845 CAGGCGAAGTCAGTGTGAAGGCCCTCATCACGAGAAATCAGCTCGTTGGAGAAGGTCAGG 1188904
Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 32780
|| ||||| ||||||||||| || ||||| || ||||| ||||| | || |||||
Sbjct 1188905 CCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCGCTGAAGAAG 1188964
Query 32781 ATTCCTTCTACTGCCGCAAAGGCAA 32805
|| || || || || ||||||||||
Sbjct 1188965 ATACCCTCAACAGCAGCAAAGGCAA 1188989
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633606234938800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |