Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12- 21] 3,253 sequences; 60,403,714 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq5 194 2e-44 seq6 86.0 8e-12 >seq5 Length=1316942 Score = 194 bits (214), Expect = 2e-44 Identities = 467/701 (67%), Gaps = 12/701 (2%) Strand=Plus/Minus Query 63020 AGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTC 63079 || ||||| || || | || ||||||| | ||| || |||| | || || || ||| Sbjct 714298 AGGCCAGGGCACTCGTTGGGGCACATCAGAGTCCAATCGCCGTTCTTCTCAACCCGCTTC 714239 Query 63080 ATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTT 63139 || ||||||||||| |||||||| |||| || ||||| | || | || || || Sbjct 714238 ATGAAGAGATCAGGGATCCAAAGGGCTAGGAAAAGATCGCGGGCGCGGACCTCTTCCTTG 714179 Query 63140 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 63199 || ||||| || || |||||| | | | ||| | ||||| || || | ||| Sbjct 714178 CCGTGGTTCTTGCGCAGGTCCAGGAACTCGAAGACATCCGCGTGCCAGGGCTCGAGGTAG 714119 Query 63200 ATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 63259 ||||| | | | || || || ||||| || ||||| || | ||||| ||| ||||| || Sbjct 714118 ATGGCGAAAGCACCCGGTCGCTTGTTGCCACCCTGGTCGACGTATCGAGCAGTGTTGTTG 714059 Query 63260 TAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTT 63319 | || | | ||| ||||| | ||| ||||| ||||| ||||| || | || || Sbjct 714058 AAGACACGGAGCATGGGAATGACACCGTTGGAGGTACCGTTGGTACCGGCAATGTAAGAG 713999 Query 63320 CCACTGGCACGAATATTACTAATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAA 63378 ||| ||||||| ||| | | | | ||||| || || || ||||| || ||||| | Sbjct 713998 CCAGTGGCACGGATA-CGGTGAGCGTTGAGACCGATACCGCCAGCCATCTTGGAGATCAT 713940 Query 63379 TGCGCATCGT-TTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTA 63437 || || ||| || | || |||||||| ||||| || ||||| ||| |||||| || | Sbjct 713939 GGCACA-CGTCTTGAGAGTGTCATAGATACCCTCGATGCTATCCTCCTTCATGTCAACCA 713881 Query 63438 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 63497 | || ||| ||||| ||| | || || || || || || | ||| || ||||| | Sbjct 713880 GGAAGCAGGAAGACAGCTGGGGCTGAGGGGTACCAGCGTTGAAAAGGGTGGGCGAAGCAT 713821 Query 63498 GAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC----C 63553 | |||||| || || | || ||||| ||||| | | || || || | Sbjct 713820 GGGTAAACAGCTTGCTGGACATGAGGTTGTAGGTCTCCAGGACACGCTCAATGTCATCGC 713761 Query 63554 CATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTG 63613 | |||| || || | |||||||| | ||||||||| |||| ||||| |||||| Sbjct 713760 CCCAGATG----CCAACAGACACACGCATGATCATGTGCTGCGGTCGCTCAACAATCTTG 713705 Query 63614 TTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAA 63673 || || || | | || ||| |||| ||| || ||||| || || | ||| Sbjct 713704 CCGTCAATCTTGAGGAGATAAGATCGCTCCAGAGTCTTGAAACCGAAGTATTGGTAGTTG 713645 Query 63674 AAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 63714 ||||| || || || | ||| | |||| ||| | ||||| Sbjct 713644 AAGTCGCGGTCATACACAATCGCGGAGTCGAGCTCCTCCTT 713604 >seq6 Length=1299473 Score = 86.0 bits (94), Expect = 8e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || ||||| || ||| || ||||| || | | ||| | |||||||| || || || Sbjct 1188845 CAGGCGAAGTCAGTGTGAAGGCCCTCATCACGAGAAATCAGCTCGTTGGAGAAGGTCAGG 1188904 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 32780 || ||||| ||||||||||| || ||||| || ||||| ||||| | || ||||| Sbjct 1188905 CCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCGCTGAAGAAG 1188964 Query 32781 ATTCCTTCTACTGCCGCAAAGGCAA 32805 || || || || || |||||||||| Sbjct 1188965 ATACCCTCAACAGCAGCAAAGGCAA 1188989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633606234938800