Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12-
21] 3,253 sequences; 60,403,714 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq1388 127 2e-24
seq8 95.1 1e-14
>seq1388
Length=1638
Score = 127 bits (140), Expect = 2e-24
Identities = 158/214 (74%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
|||||| || || || ||||| || ||||| || ||||||| | ||||| ||||| ||
Sbjct 1303 AATGCAGATTTTCGTCAAGACCTTAACCGGAAAGACCATCACTCTTGAAGTTGAGTCCTC 1244
Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
|||||||||||| | ||| | |||| ||| ||||| ||||| ||||| || ||||
Sbjct 1243 CGACACTATCGAGAACGTTAAGACCAAAATTCA-GGACAAGGAAGGTATTCCCCCGGACC 1185
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
| || || | ||||| || ||||| || | ||||| | ||||||| | ||| ||||
Sbjct 1184 AGCAACGACTCATTTTCGCTGGCAAGCAGCTCGAAGACGGTCGCACTCTTTCCGACTACA 1125
Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|||| || || || ||||| || || | |||||
Sbjct 1124 ATATCCAGAAGGAGTCCACCCTGCACCTTGTGCT 1091
Score = 113 bits (124), Expect = 4e-20
Identities = 155/214 (72%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
|||||| || || || ||||| || ||||| || ||||||| | ||||| ||||| ||
Sbjct 985 AATGCAGATTTTCGTCAAGACCTTAACCGGAAAGACCATCACTCTTGAAGTTGAGTCCTC 926
Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
|||||||||||| ||||| | || | ||| || || ||||| || || || ||||
Sbjct 925 CGACACTATCGAGAACGTGAAGACTAAGATTCA-GGATAAGGAAGGCATCCCCCCGGACC 867
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
| ||||| | || || || || || ||| | || || | |||||| || || ||||
Sbjct 866 AGCAGCGTCTCATCTTCGCTGGTAAGCAACTTGAGGACGGTCGCACCCTGTCTGACTACA 807
Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
| || ||||| ||||| || || ||| | |||||
Sbjct 806 ACATCCAAAAGGAATCTACTCTTCATCTCGTGCT 773
Score = 111 bits (122), Expect = 1e-19
Identities = 164/230 (71%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||||||||| || || ||| |||| ||||| | ||||| | |||||||| || ||
Sbjct 528 ATGCAAATATTCGTGAAAACTCTGACTGGTAAGACGATCACCCTTGAAGTGGAATCCTCG 469
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|| || || ||| ||||| | |||| ||| ||||| ||||| ||||| || |||||
Sbjct 468 GATACCATTGAGAATGTGAAGACTAAAATTCA-GGACAAGGAAGGTATTCCTCCGGACCA 410
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
|| || | || || || || || || | || || | |||||| | |||||||||
Sbjct 409 GCAACGTCTCATCTTCGCTGGTAAGCAGCTTGAGGACGGTCGCACCCTCTCCGATTACAA 350
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227
|| || ||||| || || || ||| | ||||| | ||| | || ||||
Sbjct 349 CATCCAGAAAGAGTCTACTCTTCATCTTGTGCTCCGTCTACGTGGTGGAA 300
Score = 95.1 bits (104), Expect = 1e-14
Identities = 148/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| || || || || || || | || || ||||||||||||| ||
Sbjct 1530 ATGCAGATCTTTGTTAAAACCTTAACAGGCAAGACTATTACTCTCGAAGTGGAGTCTTCC 1471
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| |||||| | ||| || ||| ||||| ||||| ||||| || |||||
Sbjct 1470 GACACCATCGAGAATGTCAAGACCAAGATCCAGGACAAGGAAGGTATTCCCCCGGACCAG 1411
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
|| || |||| || || ||||| || | ||||| | || ||| | || |||||
Sbjct 1410 CAACGTCTTATCTTCGCTGGCAAGCAGCTCGAAGACGGCCGTACTCTTTCTGACTACAAC 1351
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || || || ||||| || || | |||||
Sbjct 1350 ATCCAGAAGGAGTCCACCCTGCACCTTGTGCT 1319
>seq8
Length=1068389
Score = 95.1 bits (104), Expect = 1e-14
Identities = 138/193 (72%), Gaps = 4/193 (2%)
Strand=Plus/Plus
Query 25011 GTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAG 25070
|| ||||| | ||||| || ||||||| |||| |||||||| ||||||||||||||
Sbjct 631394 GTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCTTCTGACACTATCGA- 631452
Query 25071 TCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTA 25128
|| || ||| || ||| || || || || ||||| || ||||| ||||| | |
Sbjct 631453 -CAATGTCAAGTCGAAGATCCAGGATAAGGAGGGTATTCCCCCGGACCAGCAGCGCTTGA 631511
Query 25129 TTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAG 25188
| ||||| ||||| || | || |||| ||||| | ||| ||||| ||||| || |
Sbjct 631512 TCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAACATTCAGAAGG 631571
Query 25189 AATCCACGCTACA 25201
| || || || ||
Sbjct 631572 AGTCTACCCTCCA 631584
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433310820305195
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |