Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12- 21] 3,253 sequences; 60,403,714 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1388 127 2e-24 seq8 95.1 1e-14 >seq1388 Length=1638 Score = 127 bits (140), Expect = 2e-24 Identities = 158/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || ||||| || ||||| || ||||||| | ||||| ||||| || Sbjct 1303 AATGCAGATTTTCGTCAAGACCTTAACCGGAAAGACCATCACTCTTGAAGTTGAGTCCTC 1244 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 |||||||||||| | ||| | |||| ||| ||||| ||||| ||||| || |||| Sbjct 1243 CGACACTATCGAGAACGTTAAGACCAAAATTCA-GGACAAGGAAGGTATTCCCCCGGACC 1185 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | || || | ||||| || ||||| || | ||||| | ||||||| | ||| |||| Sbjct 1184 AGCAACGACTCATTTTCGCTGGCAAGCAGCTCGAAGACGGTCGCACTCTTTCCGACTACA 1125 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||| || || || ||||| || || | ||||| Sbjct 1124 ATATCCAGAAGGAGTCCACCCTGCACCTTGTGCT 1091 Score = 113 bits (124), Expect = 4e-20 Identities = 155/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || ||||| || ||||| || ||||||| | ||||| ||||| || Sbjct 985 AATGCAGATTTTCGTCAAGACCTTAACCGGAAAGACCATCACTCTTGAAGTTGAGTCCTC 926 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 |||||||||||| ||||| | || | ||| || || ||||| || || || |||| Sbjct 925 CGACACTATCGAGAACGTGAAGACTAAGATTCA-GGATAAGGAAGGCATCCCCCCGGACC 867 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||||| | || || || || || ||| | || || | |||||| || || |||| Sbjct 866 AGCAGCGTCTCATCTTCGCTGGTAAGCAACTTGAGGACGGTCGCACCCTGTCTGACTACA 807 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | || ||||| ||||| || || ||| | ||||| Sbjct 806 ACATCCAAAAGGAATCTACTCTTCATCTCGTGCT 773 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||||||||| || || ||| |||| ||||| | ||||| | |||||||| || || Sbjct 528 ATGCAAATATTCGTGAAAACTCTGACTGGTAAGACGATCACCCTTGAAGTGGAATCCTCG 469 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || ||| ||||| | |||| ||| ||||| ||||| ||||| || ||||| Sbjct 468 GATACCATTGAGAATGTGAAGACTAAAATTCA-GGACAAGGAAGGTATTCCTCCGGACCA 410 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || | || || || || || || | || || | |||||| | ||||||||| Sbjct 409 GCAACGTCTCATCTTCGCTGGTAAGCAGCTTGAGGACGGTCGCACCCTCTCCGATTACAA 350 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || || ||||| || || || ||| | ||||| | ||| | || |||| Sbjct 349 CATCCAGAAAGAGTCTACTCTTCATCTTGTGCTCCGTCTACGTGGTGGAA 300 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || || || || || || | || || ||||||||||||| || Sbjct 1530 ATGCAGATCTTTGTTAAAACCTTAACAGGCAAGACTATTACTCTCGAAGTGGAGTCTTCC 1471 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| | ||| || ||| ||||| ||||| ||||| || ||||| Sbjct 1470 GACACCATCGAGAATGTCAAGACCAAGATCCAGGACAAGGAAGGTATTCCCCCGGACCAG 1411 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || |||| || || ||||| || | ||||| | || ||| | || ||||| Sbjct 1410 CAACGTCTTATCTTCGCTGGCAAGCAGCTCGAAGACGGCCGTACTCTTTCTGACTACAAC 1351 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||||| || || | ||||| Sbjct 1350 ATCCAGAAGGAGTCCACCCTGCACCTTGTGCT 1319 >seq8 Length=1068389 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 25011 GTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAG 25070 || ||||| | ||||| || ||||||| |||| |||||||| |||||||||||||| Sbjct 631394 GTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCTTCTGACACTATCGA- 631452 Query 25071 TCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTA 25128 || || ||| || ||| || || || || ||||| || ||||| ||||| | | Sbjct 631453 -CAATGTCAAGTCGAAGATCCAGGATAAGGAGGGTATTCCCCCGGACCAGCAGCGCTTGA 631511 Query 25129 TTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAG 25188 | ||||| ||||| || | || |||| ||||| | ||| ||||| ||||| || | Sbjct 631512 TCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAACATTCAGAAGG 631571 Query 25189 AATCCACGCTACA 25201 | || || || || Sbjct 631572 AGTCTACCCTCCA 631584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433310820305195