Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12-
21] 3,253 sequences; 60,403,714 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq9 114 3e-20
seq6 100 6e-16
seq20 96.9 7e-15
>seq9
Length=1019700
Score = 114 bits (126), Expect = 3e-20
Identities = 436/676 (64%), Gaps = 19/676 (3%)
Strand=Plus/Minus
Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755
|| || || || || ||||||||||||||||||||||| || | || ||||| || | |
Sbjct 738999 GTTGGCTCCCTCTCTGGTGGTTGGAAGATGAAGCTGGCTCTGGCCCGAGCCATGCTCCAG 738940
Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815
|||||||| || || || || || || || || ||||| | || | ||||| | ||
Sbjct 738939 CGTGCCGACGTTCTCCTCCTGGACGAACCTACTAACCATCTCGATGTCGCCAACATCGCT 738880
Query 279816 TGGCTAGTGTCCTACCTAACCAGTCTGAAGAATG---TTTCTTCCCTCATTGTCTCTCAC 279872
||||| | | ||||||| | || | | | || || | || || |||||||||
Sbjct 738879 TGGCTTGAGACCTACCT--CAAGAC-GCACCCTGACATTACCAGTCTGATCGTCTCTCAC 738823
Query 279873 GACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAG 279932
|||||||||||||| || ||| | ||| |||| ||||| |||| ||||
Sbjct 738822 GACTCTGGCTTCCTGGACAACGTCACCACTGACATCTACCACTACGAGCCTGGCAAGAAG 738763
Query 279933 CTCTCCAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCC 279992
|| || || ||||||||| |||| || || | | || || ||||| |
Sbjct 738762 CTGGCCTGCTTCAAGGGCAACCTGGCTGCCTTTGTCGAGATCCGTCCCGAGGCCAAGAGC 738703
Query 279993 TACTATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGA- 280051
||||| ||| || | ||| | ||| | |||||| || |||| ||| ||
Sbjct 738702 TACTACACTCTGTCGGCCTCCAATGTTCAGTTCAAGTTCCCTCCTCC-GGGTATCTTGAC 738644
Query 280052 GGGCATCACATCAAAGGATCGCGCAATCATGAAGCTCCGTGGC----GTCTCCTTTGCTT 280107
|| ||| || | |||||| ||||| | | || | ||| ||| |
Sbjct 738643 TGGTGTCAAGTCGTCGACTCGCGCCATCAT----CCGCATGACCAATGTCAACTTCAGCT 738588
Query 280108 ATCCCAATGGCCCCAA--CATCTTCAGCAG-TGTCAACTCGCAGGTTTCTATGAACTCAC 280164
| || || ||||| ||||| | | |||| | ||| || | || || |
Sbjct 738587 ACCCTGGTGCTCCCAAGCCATCTCTTTCGGATGTCTCTTGCCAGCTTACCCTGTCGTCCC 738528
Query 280165 GGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTG 280224
| ||| | || || ||||| ||||| || ||||| || || ||||| | || ||||
Sbjct 738527 GAGTTGCCATTATCGGCCCCAACGGTGCCGGCAAGTCGACTCTCATCAAGCTACTTACTG 738468
Query 280225 GCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACG 280284
|||||||| || || || ||| |||||| |||||| | || || | |||
Sbjct 738467 GCGAGACCATTCCCTCTACCGGAAAGGTTGAGAAGCACCCCAACCTCCGTATCGGCTACA 738408
Query 280285 TCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACA 280344
|| |||||||| | | ||| | |||| ||| |||| | |||||| ||||| |||
Sbjct 738407 TCAAGCAGCACGCGCTGGAGCACGTTGAGATGCACTTGGAGAAGACTCCCAACCAGTACC 738348
Query 280345 TTCAGTGGCGCTATGC 280360
| |||||||| || ||
Sbjct 738347 TCCAGTGGCGATACGC 738332
>seq6
Length=1299473
Score = 100 bits (110), Expect = 6e-16
Identities = 294/446 (66%), Gaps = 14/446 (3%)
Strand=Plus/Plus
Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622
|||||||| || | |||||| | || ||||| ||||||||||||||||||||| ||
Sbjct 1188578 TCGAAGAAGTTGGTCTTGCCACCGAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTC 1188637
Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATG-CGGTCTGCCACAAACTCCAG 251681
| ||||| ||| | ||| || || || |||| | || || || || ||||| |
Sbjct 1188638 GACTTGTAGACCTTCTCGTTGCCGAGAGCGAC-AAGAAGACGATCGGCAACGAACTCAAT 1188696
Query 251682 ATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGAT 251741
||||| ||| || |||||||||||||| | || || || | ||||| ||
Sbjct 1188697 GTACTGCTTCATGAGGTCAGAGTTCATGCCGAGCAGGGCGCAGGGCAGAGCCTCGGTGAG 1188756
Query 251742 GAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTC----ACCT--GTGCCAG 251795
||| ||||| ||| ||| || || || | | || |||| | || ||| ||
Sbjct 1188757 GAACTCCTTCTCGATGGTGACGGCATCAGTGATGA-TGTCTTCGATGATCTTCTTGCTAG 1188815
Query 251796 AGACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTC 251855
|| | || ||| | |||| || || | | || | ||| || |||||
Sbjct 1188816 -CACGAC----CCTTCAGATGAGAGTGGAGCAGGCAGGCGAAGTCAGTGTGAAGGCCCTC 1188870
Query 251856 GTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAG 251915
|| ||| || | ||||||||| | |||||||||||| | ||||| ||| ||||
Sbjct 1188871 ATCACGAGAAATCAGCTCGTTGGAGAAGGTCAGGCCAGGCATGAGGCCACGCTTCTTGAG 1188930
Query 251916 CCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAAC 251975
||||||||| | ||||| || ||| | | |||||| ||| | | |||||
Sbjct 1188931 CCAGAAGATGGAAGCAAAGGCACCGCTGAAGAAGATACCCTCAACAGCAGCAAAGGCAAC 1188990
Query 251976 AAGGCGCTCAGCAAACGACTTGTCCT 252001
||||||| ||||| ||| |||||
Sbjct 1188991 CAGGCGCTGGGCAAAGGACGAGTCCT 1189016
>seq20
Length=502720
Score = 96.9 bits (106), Expect = 7e-15
Identities = 156/222 (70%), Gaps = 2/222 (1%)
Strand=Plus/Minus
Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404
|||||||||||||| |||| |||||| ||||| || |||| |||||||| || |||
Sbjct 219825 GGTGAGGATCTGTGCAACTGCACTTTCTCTCTCGCCTACGGTGCCAAGATTCTTCTCAAC 219766
Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464
|||| ||| ||||||||||| | || || ||||| ||||||||| || |
Sbjct 219765 CAGACCCATCTCCGTCTCAAGCGTGGCCAGCGCTACGGTCTTTGCGGTCCCAACGGTTCC 219706
Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524
|| ||| ||| || |||||||| || |||| ||| | | ||| ||||| | |||
Sbjct 219705 GGAAAGTCCACCCTCATGCGCGCTATCAACAACGAGCAGGTCG-AGGGTTTCCCCAAGCA 219647
Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565
|| || | ||| || | || ||||||||| | || ||
Sbjct 219646 GGACGAAGTCAAGACTGTCTTCGTCGAGCACGACCTGGATTC 219605
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027793960725773
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