Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12- 21] 3,253 sequences; 60,403,714 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq9 114 3e-20 seq6 100 6e-16 seq20 96.9 7e-15 >seq9 Length=1019700 Score = 114 bits (126), Expect = 3e-20 Identities = 436/676 (64%), Gaps = 19/676 (3%) Strand=Plus/Minus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || || || || || ||||||||||||||||||||||| || | || ||||| || | | Sbjct 738999 GTTGGCTCCCTCTCTGGTGGTTGGAAGATGAAGCTGGCTCTGGCCCGAGCCATGCTCCAG 738940 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815 |||||||| || || || || || || || || ||||| | || | ||||| | || Sbjct 738939 CGTGCCGACGTTCTCCTCCTGGACGAACCTACTAACCATCTCGATGTCGCCAACATCGCT 738880 Query 279816 TGGCTAGTGTCCTACCTAACCAGTCTGAAGAATG---TTTCTTCCCTCATTGTCTCTCAC 279872 ||||| | | ||||||| | || | | | || || | || || ||||||||| Sbjct 738879 TGGCTTGAGACCTACCT--CAAGAC-GCACCCTGACATTACCAGTCTGATCGTCTCTCAC 738823 Query 279873 GACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAG 279932 |||||||||||||| || ||| | ||| |||| ||||| |||| |||| Sbjct 738822 GACTCTGGCTTCCTGGACAACGTCACCACTGACATCTACCACTACGAGCCTGGCAAGAAG 738763 Query 279933 CTCTCCAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCC 279992 || || || ||||||||| |||| || || | | || || ||||| | Sbjct 738762 CTGGCCTGCTTCAAGGGCAACCTGGCTGCCTTTGTCGAGATCCGTCCCGAGGCCAAGAGC 738703 Query 279993 TACTATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGA- 280051 ||||| ||| || | ||| | ||| | |||||| || |||| ||| || Sbjct 738702 TACTACACTCTGTCGGCCTCCAATGTTCAGTTCAAGTTCCCTCCTCC-GGGTATCTTGAC 738644 Query 280052 GGGCATCACATCAAAGGATCGCGCAATCATGAAGCTCCGTGGC----GTCTCCTTTGCTT 280107 || ||| || | |||||| ||||| | | || | ||| ||| | Sbjct 738643 TGGTGTCAAGTCGTCGACTCGCGCCATCAT----CCGCATGACCAATGTCAACTTCAGCT 738588 Query 280108 ATCCCAATGGCCCCAA--CATCTTCAGCAG-TGTCAACTCGCAGGTTTCTATGAACTCAC 280164 | || || ||||| ||||| | | |||| | ||| || | || || | Sbjct 738587 ACCCTGGTGCTCCCAAGCCATCTCTTTCGGATGTCTCTTGCCAGCTTACCCTGTCGTCCC 738528 Query 280165 GGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTG 280224 | ||| | || || ||||| ||||| || ||||| || || ||||| | || |||| Sbjct 738527 GAGTTGCCATTATCGGCCCCAACGGTGCCGGCAAGTCGACTCTCATCAAGCTACTTACTG 738468 Query 280225 GCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACG 280284 |||||||| || || || ||| |||||| |||||| | || || | ||| Sbjct 738467 GCGAGACCATTCCCTCTACCGGAAAGGTTGAGAAGCACCCCAACCTCCGTATCGGCTACA 738408 Query 280285 TCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACA 280344 || |||||||| | | ||| | |||| ||| |||| | |||||| ||||| ||| Sbjct 738407 TCAAGCAGCACGCGCTGGAGCACGTTGAGATGCACTTGGAGAAGACTCCCAACCAGTACC 738348 Query 280345 TTCAGTGGCGCTATGC 280360 | |||||||| || || Sbjct 738347 TCCAGTGGCGATACGC 738332 >seq6 Length=1299473 Score = 100 bits (110), Expect = 6e-16 Identities = 294/446 (66%), Gaps = 14/446 (3%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| | || ||||| ||||||||||||||||||||| || Sbjct 1188578 TCGAAGAAGTTGGTCTTGCCACCGAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTC 1188637 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATG-CGGTCTGCCACAAACTCCAG 251681 | ||||| ||| | ||| || || || |||| | || || || || ||||| | Sbjct 1188638 GACTTGTAGACCTTCTCGTTGCCGAGAGCGAC-AAGAAGACGATCGGCAACGAACTCAAT 1188696 Query 251682 ATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGAT 251741 ||||| ||| || |||||||||||||| | || || || | ||||| || Sbjct 1188697 GTACTGCTTCATGAGGTCAGAGTTCATGCCGAGCAGGGCGCAGGGCAGAGCCTCGGTGAG 1188756 Query 251742 GAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTC----ACCT--GTGCCAG 251795 ||| ||||| ||| ||| || || || | | || |||| | || ||| || Sbjct 1188757 GAACTCCTTCTCGATGGTGACGGCATCAGTGATGA-TGTCTTCGATGATCTTCTTGCTAG 1188815 Query 251796 AGACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTC 251855 || | || ||| | |||| || || | | || | ||| || ||||| Sbjct 1188816 -CACGAC----CCTTCAGATGAGAGTGGAGCAGGCAGGCGAAGTCAGTGTGAAGGCCCTC 1188870 Query 251856 GTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAG 251915 || ||| || | ||||||||| | |||||||||||| | ||||| ||| |||| Sbjct 1188871 ATCACGAGAAATCAGCTCGTTGGAGAAGGTCAGGCCAGGCATGAGGCCACGCTTCTTGAG 1188930 Query 251916 CCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAAC 251975 ||||||||| | ||||| || ||| | | |||||| ||| | | ||||| Sbjct 1188931 CCAGAAGATGGAAGCAAAGGCACCGCTGAAGAAGATACCCTCAACAGCAGCAAAGGCAAC 1188990 Query 251976 AAGGCGCTCAGCAAACGACTTGTCCT 252001 ||||||| ||||| ||| ||||| Sbjct 1188991 CAGGCGCTGGGCAAAGGACGAGTCCT 1189016 >seq20 Length=502720 Score = 96.9 bits (106), Expect = 7e-15 Identities = 156/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 |||||||||||||| |||| |||||| ||||| || |||| |||||||| || ||| Sbjct 219825 GGTGAGGATCTGTGCAACTGCACTTTCTCTCTCGCCTACGGTGCCAAGATTCTTCTCAAC 219766 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 |||| ||| ||||||||||| | || || ||||| ||||||||| || | Sbjct 219765 CAGACCCATCTCCGTCTCAAGCGTGGCCAGCGCTACGGTCTTTGCGGTCCCAACGGTTCC 219706 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| ||| || |||||||| || |||| ||| | | ||| ||||| | ||| Sbjct 219705 GGAAAGTCCACCCTCATGCGCGCTATCAACAACGAGCAGGTCG-AGGGTTTCCCCAAGCA 219647 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565 || || | ||| || | || ||||||||| | || || Sbjct 219646 GGACGAAGTCAAGACTGTCTTCGTCGAGCACGACCTGGATTC 219605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027793960725773