Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12- 21] 3,253 sequences; 60,403,714 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq1388 140 3e-28 seq8 123 2e-23 seq3070 100 2e-16 >seq1388 Length=1638 Score = 140 bits (154), Expect = 3e-28 Identities = 171/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || |||||||| | | || | ||| | ||||| ||||| || |||||||||||| Sbjct 299 ATTCCACCACGTAGACGGAGCACAAGATGAAGAGTAGACTCTTTCTGGATGTTGTAATCG 358 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || ||| || ||||| || ||||||||| |||||||||| || ||||||||| Sbjct 359 GAGAGGGTGCGACCGTCCTCAAGCTGCTTACCAGCGAAGATGAGACGTTGCTGGTCCGGA 418 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGT-TTTAGCTGTTCAACGGTGTCGGTGGATTC 114331 ||||| ||||| ||||| ||| ||| || || | | |||| ||| || | |||||| Sbjct 419 GGAATACCTTCCTTGTCCTGAAT-TTTAGTCTTCACATTCTCAATGGTATCCGAGGATTC 477 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | ||| || || ||||||||||| || || || ||||| Sbjct 478 CACTTCAAGGGTGATCGTCTTACCAGTCAGAGTTTTCACGAATATTTGCAT 528 Score = 122 bits (134), Expect = 7e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || ||||| || || | || || | ||| | |||||||| ||||| |||||||| || Sbjct 755 ATTCCGCCGCGAAGACGCAGCACGAGATGAAGAGTAGATTCCTTTTGGATGTTGTAGTCA 814 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || ||| || |||||||| ||||||||| ||||||||||||| |||||||| Sbjct 815 GACAGGGTGCGACCGTCCTCAAGTTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGG 874 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || |||||||| || || |||||| || | | || | ||||||| ||| || Sbjct 875 GGGATGCCTTCCTTATCCTGAATCTTAGTCTTCACGTTCTCGATAGTGTCGGAGGACTCA 934 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | || || ||||| | || || || ||||||||||| Sbjct 935 ACTTCAAGAGTGATGGTCTTTCCGGTTAAGGTCTTGACGAAAATCTGCAT 984 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| ||||| || |||||||||||| | ||| ||| || || || || ||||| Sbjct 104 GTAGACTCTTTCTGGATGTTGTAATCGGAAAGAGTGCGACCGTCCTCGAGCTGCTTACCG 163 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||||||||| |||||||| || |||||||| || || |||||| || Sbjct 164 GCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCTTCCTTATCCTGAATCTTAGTCTTG 223 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||||| |||||| || || | || | || || || || || || Sbjct 224 ACGTTCTCAATAGTGTCGGAGGATTCCACCTCAAGAGTAATGGTCTTTCCAGTAAGGGTC 283 Query 114366 TTTACAAAAATCTGCAT 114382 || || ||||||||||| Sbjct 284 TTCACGAAAATCTGCAT 300 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| | | | || | ||| | || ||||| || ||||||||||| || Sbjct 527 ATACCACCACGCAAGCGAAGTACGAGATGCAAAGTGGATTCCTTCTGAATGTTGTAGTCA 586 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || ||| || ||||| || |||||| |||| ||||| || || ||||| Sbjct 587 GAAAGGGTGCGGCCATCCTCGAGTTGCTTTCCAGCGAAGATAAGACGTTGCTGATCCGGG 646 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||| ||||| |||||| || | | || | ||| || | ||||||| Sbjct 647 GGGATACCTTCCTTGTCTTGAATCTTAGTCTTCACGTTCTCGATGGTATCAGAGGATTCG 706 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | || || || || ||||| || |||||||||||||| Sbjct 707 ACTTCAAGAGTAATGGTCTTTCCAGTAAGAGTCTTGACAAAAATCTGCAT 756 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || || ||||| ||| | ||| ||| ||||| || || || ||| Sbjct 1106 GTGGACTCCTTCTGGATATTGTAGTCGGAAAGAGTGCGACCGTCTTCGAGCTGCTTGCCA 1165 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| | ||||| || || |||||||| ||||| ||||| ||||| ||| ||| || || Sbjct 1166 GCGAAAATGAGTCGTTGCTGGTCCGGGGGAATACCTTCCTTGTCCTGAAT-TTTGGTCTT 1224 Query 114306 AGCTGT-TCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | | | || | ||||||| ||| || || || | || | || || ||||| | || Sbjct 1225 AACGTTCTCGATAGTGTCGGAGGACTCAACTTCAAGAGTGATGGTCTTTCCGGTTAAGGT 1284 Query 114365 TTTTACAAAAATCTGCAT 114382 || || ||||||||||| Sbjct 1285 CTTGACGAAAATCTGCAT 1302 >seq8 Length=1068389 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||||||||| || | | || | || | ||||| || || || |||||||||||||| Sbjct 632065 ACCGCCACGAAGACGGAGGACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCGCT 632006 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || || ||| ||| || || || |||||||| |||| || ||||| ||||| || || Sbjct 632005 CAGGGTGCGACCATCCTCCAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCGGGGGG 631946 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 |||||| || ||||| |||||| || | | || | ||| ||| |||| ||||| Sbjct 631945 AATGCCCTCCTTGTCCTGAATCTTCGACTTCACATTGTCGATGGTATCGCTGGACTCGAC 631886 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | ||| || |||||||| || || || || |||||||| Sbjct 631885 CTCAAGAGTGATCGTCTTTCCGGTCAGGGTCTTCACGAAGATCTGCAT 631838 >seq3070 Length=537 Score = 100 bits (110), Expect = 2e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 114152 AATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC 114211 || ||| ||||| || | | || | ||||| ||||| || || ||||||||||| || Sbjct 255 AAGACCACCACGAAGACGGAGCACAAGATGTAGAGTAGACTCCTTCTGAATGTTGTAGTC 196 Query 114212 GCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGG 114271 | || ||| || ||| || ||||| || || || ||||||| ||||| || ||||| Sbjct 195 GGACAGAGTGCGGTCATCCTCCAGTTGCTTTCCCGCAAAGATGAGGCGCTGCTGATCCGG 136 Query 114272 AGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTC-AACGGTGTCGGTGGATT 114330 |||||| ||||| ||||| |||| || || || | | | | | | |||| || | Sbjct 135 AGGAATTCCTTCCTTGTCCTGAATC-TTGGTCTTCACATTGCTGATGCTATCGGATGACT 77 Query 114331 CGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || || | || | || || ||||| || ||||| || || |||||||| Sbjct 76 CTACTTCGAGAGTGATAGTCTTTCCGGTTAGCGTTTTGACGAAGATCTGCAT 25 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420117743377836