Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12-
21] 3,253 sequences; 60,403,714 total letters
Query= NC_009899.1
Length=344691
Score E
Sequences producing significant alignments: (Bits) Value
seq6 129 1e-24
seq20 96.9 8e-15
>seq6
Length=1299473
Score = 129 bits (142), Expect = 1e-24
Identities = 175/244 (72%), Gaps = 0/244 (0%)
Strand=Plus/Minus
Query 243494 TCAAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTC 243553
|| || | |||||||| || || || | ||| ||||| ||| | ||| ||| | |
Sbjct 1188800 TCGAAGACATCATCACTGATGCCGTCACCATCGAGAAGGAGTTCCTCACCGAGGCTCTGC 1188741
Query 243554 CATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCG 243613
| ||| || | |||||||||||||| |||||| |||||||| || ||||| ||||
Sbjct 1188740 CCTGCGCCCTGCTCGGCATGAACTCTGACCTCATGAAGCAGTACATTGAGTTCGTTGCCG 1188681
Query 243614 ACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCT 243673
| || || | |||| || || | ||||| || ||||| || | |||||||| | ||
Sbjct 1188680 ATCGTCTTCTTGTCGCTCTCGGCAACGAGAAGGTCTACAAGTCGACCAACCCCTTCGACT 1188621
Query 243674 TTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATT 243733
| |||||| ||| || || || || || ||||||||||| ||||||||| |||| |
Sbjct 1188620 TCATGGAGAACATCTCCCTCGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGACT 1188561
Query 243734 ATCA 243737
| ||
Sbjct 1188560 ACCA 1188557
>seq20
Length=502720
Score = 96.9 bits (106), Expect = 8e-15
Identities = 170/248 (69%), Gaps = 0/248 (0%)
Strand=Plus/Plus
Query 334107 TCAATGATAGCCATGTTAGAATCGGACCCGTCGAGATCGTGTTCCACGTAAGCAGTTTTC 334166
|||||| | | ||| | || ||||| || || ||||| || ||| | |||| ||
Sbjct 219578 TCAATGGTGGTCATCTCAGTATCGGCAGAATCCAGGTCGTGCTCGACGAAGACAGTCTTG 219637
Query 334167 AAAACATCCGCAGAGGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGAGTT 334226
| | ||| |||||| || || | ||| |||| ||||||||||| || ||
Sbjct 219638 ACTTCGTCCTGCTTGGGGAAACCCTCGACCTGCTCGTTGTTGATAGCGCGCATGAGGGTG 219697
Query 334227 GATTTACCCGCCCCGTTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTGAAC 334286
|| || || | ||||| || || || ||||||||||| | |||||||| ||| ||
Sbjct 219698 GACTTTCCGGAACCGTTGGGACCGCAAAGACCGTAGCGCTGGCCACGCTTGAGACGGAGA 219757
Query 334287 CGCGTATTGTTCAGAAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACAGA 334346
| || | ||| |||||||| || |||| || || ||||| || || | ||||||
Sbjct 219758 TGGGTCTGGTTGAGAAGAATCTTGGCACCGTAGGCGAGAGAGAAAGTGCAGTTGCACAGA 219817
Query 334347 TCCTCACC 334354
||||||||
Sbjct 219818 TCCTCACC 219825
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1102834032995550
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |