Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12- 21] 3,253 sequences; 60,403,714 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq6 129 1e-24 seq20 96.9 8e-15 >seq6 Length=1299473 Score = 129 bits (142), Expect = 1e-24 Identities = 175/244 (72%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 243494 TCAAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTC 243553 || || | |||||||| || || || | ||| ||||| ||| | ||| ||| | | Sbjct 1188800 TCGAAGACATCATCACTGATGCCGTCACCATCGAGAAGGAGTTCCTCACCGAGGCTCTGC 1188741 Query 243554 CATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCG 243613 | ||| || | |||||||||||||| |||||| |||||||| || ||||| |||| Sbjct 1188740 CCTGCGCCCTGCTCGGCATGAACTCTGACCTCATGAAGCAGTACATTGAGTTCGTTGCCG 1188681 Query 243614 ACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCT 243673 | || || | |||| || || | ||||| || ||||| || | |||||||| | || Sbjct 1188680 ATCGTCTTCTTGTCGCTCTCGGCAACGAGAAGGTCTACAAGTCGACCAACCCCTTCGACT 1188621 Query 243674 TTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATT 243733 | |||||| ||| || || || || || ||||||||||| ||||||||| |||| | Sbjct 1188620 TCATGGAGAACATCTCCCTCGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGACT 1188561 Query 243734 ATCA 243737 | || Sbjct 1188560 ACCA 1188557 >seq20 Length=502720 Score = 96.9 bits (106), Expect = 8e-15 Identities = 170/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 334107 TCAATGATAGCCATGTTAGAATCGGACCCGTCGAGATCGTGTTCCACGTAAGCAGTTTTC 334166 |||||| | | ||| | || ||||| || || ||||| || ||| | |||| || Sbjct 219578 TCAATGGTGGTCATCTCAGTATCGGCAGAATCCAGGTCGTGCTCGACGAAGACAGTCTTG 219637 Query 334167 AAAACATCCGCAGAGGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGAGTT 334226 | | ||| |||||| || || | ||| |||| ||||||||||| || || Sbjct 219638 ACTTCGTCCTGCTTGGGGAAACCCTCGACCTGCTCGTTGTTGATAGCGCGCATGAGGGTG 219697 Query 334227 GATTTACCCGCCCCGTTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTGAAC 334286 || || || | ||||| || || || ||||||||||| | |||||||| ||| || Sbjct 219698 GACTTTCCGGAACCGTTGGGACCGCAAAGACCGTAGCGCTGGCCACGCTTGAGACGGAGA 219757 Query 334287 CGCGTATTGTTCAGAAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACAGA 334346 | || | ||| |||||||| || |||| || || ||||| || || | |||||| Sbjct 219758 TGGGTCTGGTTGAGAAGAATCTTGGCACCGTAGGCGAGAGAGAAAGTGCAGTTGCACAGA 219817 Query 334347 TCCTCACC 334354 |||||||| Sbjct 219818 TCCTCACC 219825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102834032995550