Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12-
21] 3,253 sequences; 60,403,714 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq19 127 2e-24
seq1388 109 6e-19
seq8 102 9e-17
seq15 93.3 5e-14
>seq19
Length=502728
Score = 127 bits (140), Expect = 2e-24
Identities = 158/214 (74%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058
|||||| || | ||||||||||| || || ||||| || |||||| || | || ||
Sbjct 172591 CACCAAGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCATCCTC 172650
Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118
|||||||||||||| || || |||||||||||||| | || | || ||||||||||
Sbjct 172651 GAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 172710
Query 42119 GATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 42177
||| || |||| ||| | | | |||||| || ||||| || | ||||| || |
Sbjct 172711 GATCTTGGACTTGA-CGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCT 172769
Query 42178 TGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211
| ||||| || ||||| || ||||| ||||| ||
Sbjct 172770 TCCCCGTGAGGGTCTTGACGAAGATCTGCATCTT 172803
>seq1388
Length=1638
Score = 109 bits (120), Expect = 6e-19
Identities = 142/194 (73%), Gaps = 2/194 (1%)
Strand=Plus/Plus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
||| || || || |||||||| | ||||| || |||| || ||||||||||| |||||
Sbjct 109 CTCTTTCTGGATGTTGTAATCGGAAAGAGTGCGACCGTCCTCGAGCTGCTTACCGGCGAA 168
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCG 42135
||||| ||||||||||| | || | || ||||| ||| ||| | || || ||||
Sbjct 169 GATGAGACGCTGCTGGTCCGGGGGGATGCCTTCCTTATCC-TGAATCTTAGTCTTGACGT 227
Query 42136 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195
|| | | |||||| |||||||| || | || ||||| || || || || ||||| |
Sbjct 228 TCTCAATAGTGTCGGAGGATTCCACCTCAAGAGTAATGGTCTTTCCAGTAAGGGTCTTCA 287
Query 42196 CAAAGATTTGCATT 42209
| || || ||||||
Sbjct 288 CGAAAATCTGCATT 301
Score = 107 bits (118), Expect = 2e-18
Identities = 141/193 (73%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077
|||||||| || ||||| |||| ||| || || |||| || || ||||||||||||||
Sbjct 794 TCCTTTTGGATGTTGTAGTCAGACAGGGTGCGACCGTCCTCAAGTTGCTTACCAGCGAAG 853
Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGT 42136
||||| ||||||||||| | || | || ||||| ||| ||| | || || || | |
Sbjct 854 ATGAGACGCTGCTGGTCCGGGGGGATGCCTTCCTTATCC-TGAATCTTAGTCTTCACGTT 912
Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196
| | | |||||| || || || || | |||||||| || || |||| ||||| ||
Sbjct 913 CTCGATAGTGTCGGAGGACTCAACTTCAAGAGTGATGGTCTTTCCGGTTAAGGTCTTGAC 972
Query 42197 AAAGATTTGCATT 42209
|| || ||||||
Sbjct 973 GAAAATCTGCATT 985
Score = 93.3 bits (102), Expect = 5e-14
Identities = 138/193 (72%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
||| || || || |||||||| | || || || |||| || |||||||||||||||||
Sbjct 337 CTCTTTCTGGATGTTGTAATCGGAGAGGGTGCGACCGTCCTCAAGCTGCTTACCAGCGAA 396
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCG 42135
||||| || |||||||| | || | | ||||||||| ||| |||| || || |
Sbjct 397 GATGAGACGTTGCTGGTCCGGAGGAATACCTTCCTTGTCC-TGAATTTTAGTCTTCACAT 455
Query 42136 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195
|| | | || || |||||||| || | ||||| || || || || || || || |
Sbjct 456 TCTCAATGGTATCCGAGGATTCCACTTCAAGGGTGATCGTCTTACCAGTCAGAGTTTTCA 515
Query 42196 CAAAGATTTGCAT 42208
| || ||||||||
Sbjct 516 CGAATATTTGCAT 528
>seq8
Length=1068389
Score = 102 bits (112), Expect = 9e-17
Identities = 142/194 (73%), Gaps = 4/194 (2%)
Strand=Plus/Minus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
||| || || || ||||| |||| ||| || || | || || |||||||| || |||||
Sbjct 631801 CTCTTTCTGGATGTTGTAGTCAGACAGGGTTCGACCATCCTCAAGCTGCTTTCCGGCGAA 631742
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135
|||||||||||||| || | || | || |||||||||| ||| | || | |||| ||
Sbjct 631741 GATGAGTCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCC-TGAATCTTCGACTTGA-CG 631684
Query 42136 TCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 42194
| | | | || || || ||||| |||| ||||| || || || || || |||||
Sbjct 631683 TTGTCGATGGTATCAGATGACTCCACCTCGAGGGTGATAGTCTTACCGGTGAGGGTCTTG 631624
Query 42195 ACAAAGATTTGCAT 42208
|||||||| |||||
Sbjct 631623 ACAAAGATCTGCAT 631610
Score = 102 bits (112), Expect = 9e-17
Identities = 140/193 (73%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| || || |||||||| ||| || || | || || |||||||||||||| ||
Sbjct 632029 CTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCATCCTCCAGCTGCTTACCAGCAAA 631970
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135
|| |||||||||||||||| || | || |||||||||| ||| | || | || |
Sbjct 631969 GATAAGTCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCC-TGAATCTTCGACTTCACAT 631911
Query 42136 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195
| | | || ||||| || || || || | ||||| || || || || || ||||| |
Sbjct 631910 TGTCGATGGTATCGCTGGACTCGACCTCAAGAGTGATCGTCTTTCCGGTCAGGGTCTTCA 631851
Query 42196 CAAAGATTTGCAT 42208
| ||||| |||||
Sbjct 631850 CGAAGATCTGCAT 631838
>seq15
Length=666898
Score = 93.3 bits (102), Expect = 5e-14
Identities = 129/181 (71%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078
|||| || || ||||| || | ||||| || | || || |||||||| |||||||| |
Sbjct 143566 CCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGA 143507
Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 42138
| |||||||||||||| | || | || |||||||||| ||| || |||| |
Sbjct 143506 TCAGTCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 143447
Query 42139 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 42198
| | ||||| || || || || | |||||||| |||||||| || ||||| || |
Sbjct 143446 CAATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGA 143387
Query 42199 A 42199
|
Sbjct 143386 A 143386
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543190711609520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |