Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12- 21] 3,253 sequences; 60,403,714 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq19 127 2e-24 seq1388 109 6e-19 seq8 102 9e-17 seq15 93.3 5e-14 >seq19 Length=502728 Score = 127 bits (140), Expect = 2e-24 Identities = 158/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 |||||| || | ||||||||||| || || ||||| || |||||| || | || || Sbjct 172591 CACCAAGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCATCCTC 172650 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 |||||||||||||| || || |||||||||||||| | || | || |||||||||| Sbjct 172651 GAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 172710 Query 42119 GATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 42177 ||| || |||| ||| | | | |||||| || ||||| || | ||||| || | Sbjct 172711 GATCTTGGACTTGA-CGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCT 172769 Query 42178 TGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 | ||||| || ||||| || ||||| ||||| || Sbjct 172770 TCCCCGTGAGGGTCTTGACGAAGATCTGCATCTT 172803 >seq1388 Length=1638 Score = 109 bits (120), Expect = 6e-19 Identities = 142/194 (73%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||| || || || |||||||| | ||||| || |||| || ||||||||||| ||||| Sbjct 109 CTCTTTCTGGATGTTGTAATCGGAAAGAGTGCGACCGTCCTCGAGCTGCTTACCGGCGAA 168 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCG 42135 ||||| ||||||||||| | || | || ||||| ||| ||| | || || |||| Sbjct 169 GATGAGACGCTGCTGGTCCGGGGGGATGCCTTCCTTATCC-TGAATCTTAGTCTTGACGT 227 Query 42136 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 || | | |||||| |||||||| || | || ||||| || || || || ||||| | Sbjct 228 TCTCAATAGTGTCGGAGGATTCCACCTCAAGAGTAATGGTCTTTCCAGTAAGGGTCTTCA 287 Query 42196 CAAAGATTTGCATT 42209 | || || |||||| Sbjct 288 CGAAAATCTGCATT 301 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 |||||||| || ||||| |||| ||| || || |||| || || |||||||||||||| Sbjct 794 TCCTTTTGGATGTTGTAGTCAGACAGGGTGCGACCGTCCTCAAGTTGCTTACCAGCGAAG 853 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGT 42136 ||||| ||||||||||| | || | || ||||| ||| ||| | || || || | | Sbjct 854 ATGAGACGCTGCTGGTCCGGGGGGATGCCTTCCTTATCC-TGAATCTTAGTCTTCACGTT 912 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | |||||| || || || || | |||||||| || || |||| ||||| || Sbjct 913 CTCGATAGTGTCGGAGGACTCAACTTCAAGAGTGATGGTCTTTCCGGTTAAGGTCTTGAC 972 Query 42197 AAAGATTTGCATT 42209 || || |||||| Sbjct 973 GAAAATCTGCATT 985 Score = 93.3 bits (102), Expect = 5e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||| || || || |||||||| | || || || |||| || ||||||||||||||||| Sbjct 337 CTCTTTCTGGATGTTGTAATCGGAGAGGGTGCGACCGTCCTCAAGCTGCTTACCAGCGAA 396 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCG 42135 ||||| || |||||||| | || | | ||||||||| ||| |||| || || | Sbjct 397 GATGAGACGTTGCTGGTCCGGAGGAATACCTTCCTTGTCC-TGAATTTTAGTCTTCACAT 455 Query 42136 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 || | | || || |||||||| || | ||||| || || || || || || || | Sbjct 456 TCTCAATGGTATCCGAGGATTCCACTTCAAGGGTGATCGTCTTACCAGTCAGAGTTTTCA 515 Query 42196 CAAAGATTTGCAT 42208 | || |||||||| Sbjct 516 CGAATATTTGCAT 528 >seq8 Length=1068389 Score = 102 bits (112), Expect = 9e-17 Identities = 142/194 (73%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||| || || || ||||| |||| ||| || || | || || |||||||| || ||||| Sbjct 631801 CTCTTTCTGGATGTTGTAGTCAGACAGGGTTCGACCATCCTCAAGCTGCTTTCCGGCGAA 631742 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 |||||||||||||| || | || | || |||||||||| ||| | || | |||| || Sbjct 631741 GATGAGTCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCC-TGAATCTTCGACTTGA-CG 631684 Query 42136 TCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 42194 | | | | || || || ||||| |||| ||||| || || || || || ||||| Sbjct 631683 TTGTCGATGGTATCAGATGACTCCACCTCGAGGGTGATAGTCTTACCGGTGAGGGTCTTG 631624 Query 42195 ACAAAGATTTGCAT 42208 |||||||| ||||| Sbjct 631623 ACAAAGATCTGCAT 631610 Score = 102 bits (112), Expect = 9e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || |||||||| ||| || || | || || |||||||||||||| || Sbjct 632029 CTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCATCCTCCAGCTGCTTACCAGCAAA 631970 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 || |||||||||||||||| || | || |||||||||| ||| | || | || | Sbjct 631969 GATAAGTCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCC-TGAATCTTCGACTTCACAT 631911 Query 42136 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | || ||||| || || || || | ||||| || || || || || ||||| | Sbjct 631910 TGTCGATGGTATCGCTGGACTCGACCTCAAGAGTGATCGTCTTTCCGGTCAGGGTCTTCA 631851 Query 42196 CAAAGATTTGCAT 42208 | ||||| ||||| Sbjct 631850 CGAAGATCTGCAT 631838 >seq15 Length=666898 Score = 93.3 bits (102), Expect = 5e-14 Identities = 129/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078 |||| || || ||||| || | ||||| || | || || |||||||| |||||||| | Sbjct 143566 CCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGA 143507 Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 42138 | |||||||||||||| | || | || |||||||||| ||| || |||| | Sbjct 143506 TCAGTCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 143447 Query 42139 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 42198 | | ||||| || || || || | |||||||| |||||||| || ||||| || | Sbjct 143446 CAATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGA 143387 Query 42199 A 42199 | Sbjct 143386 A 143386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543190711609520