Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12-
21] 3,253 sequences; 60,403,714 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq6 122 9e-23
seq19 113 4e-20
seq1388 105 7e-18
seq3070 102 8e-17
seq8 82.4 8e-11
>seq6
Length=1299473
Score = 122 bits (134), Expect = 9e-23
Identities = 345/520 (66%), Gaps = 19/520 (4%)
Strand=Plus/Minus
Query 52326 GTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCC 52385
|| || ||| | || || |||||| | ||||| || ||||||| || |||| | |
Sbjct 1189068 GTTCCCTGCATCCGAAAGAAGGCTGACTGGGCCATCCGGTGGATCCAG---GACAAGGAC 1189012
Query 52386 ACGC---TGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGC 52442
|| | ||| ||||| |||| ||||| || || ||||| | || || |||
Sbjct 1189011 TCGTCCTTTGCCCAGCGCCTGGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGCGGT 1188952
Query 52443 AGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGC 52502
|||||| ||||||| | | || | | ||| | ||||| |||||||| ||| |
Sbjct 1188951 GCCTTTGCTTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGCCTGACCTTCTCC 1188892
Query 52503 AACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAG 52562
|||||| |||| || || || || || || ||||| ||||| || ||||| || ||
Sbjct 1188891 AACGAGCTGATTTCTCGTGATGAGGGCCTTCACACTGACTTCGCCTGCCTG--CTCCA-- 1188836
Query 52563 ACGCGCGTGACCGAAAAATTGGATTCGGAC-ACGATCCTG--AG-CATGTTCAAGGAGGC 52618
| | | | | ||| | | | | | | |||| | || ||| ||| || ||
Sbjct 1188835 -CTCTCAT--CTGAAGGGTCGTGCTAGCAAGAAGATCATCGAAGACATCATCACTGATGC 1188779
Query 52619 GGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAA 52678
|| | ||||| |||||||| | || | || ||||| || ||||| ||||||||
Sbjct 1188778 CGTCACCATCGAGAAGGAGTTCCTCACCGAGGCTCTGCCCTGCGCCCTGCTCGGCATGAA 1188719
Query 52679 CGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGG 52738
| | | |||| ||||||| ||||| || || |||||||| | || |||||
Sbjct 1188718 CTCTGACCTCATGAAGCAGTACATTGAGTTCGTTGCCGATCGTCTTCTTGTCGCTCTCGG 1188659
Query 52739 GCAGCCA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTG 52797
|| | | ||| || ||| | ||| || || || || ||| | ||||| || || |
Sbjct 1188658 -CAACGAGAAGGTCTACAAGTCGACCAACCCCTTCGACTTCATGGAGAACATCTCCCTCG 1188600
Query 52798 AGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837
|||||||||||||| ||||||||||| ||||| || ||
Sbjct 1188599 GTGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGACTA 1188560
>seq19
Length=502728
Score = 113 bits (124), Expect = 4e-20
Identities = 140/192 (73%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482
|||||| || |||||||||||||||| ||| || |||||||| || ||||| | | |
Sbjct 172609 CTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCATCCTCGAGCTGCTTACCAGCAAA 172668
Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTG 138542
||| || ||||| |||||||| || || || || ||||| ||| || || | |
Sbjct 172669 GATAAGTCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTT 172728
Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602
|| | |||||||| ||||||||||| | || | ||| || || || || || || ||
Sbjct 172729 GTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGAC 172788
Query 138603 AAAAATCTGCAT 138614
|| ||||||||
Sbjct 172789 GAAGATCTGCAT 172800
>seq1388
Length=1638
Score = 105 bits (116), Expect = 7e-18
Identities = 142/195 (73%), Gaps = 2/195 (1%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
||||| || || |||||||| ||| | || || |||||| || || ||||| |
Sbjct 335 GACTCTTTCTGGATGTTGTAATCGGAGAGGGTGCGACCGTCCTCAAGCTGCTTACCAGCG 394
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGT-TTTAA 138539
|||| ||||| || ||||||||||| |||||||| ||||| ||| |||| || || |
Sbjct 395 AAGATGAGACGTTGCTGGTCCGGAGGAATACCTTCCTTGTC-CTGAATTTTAGTCTTCAC 453
Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599
| || | ||| || | || ||||| || | || | ||| |||||||||||||||||
Sbjct 454 ATTCTCAATGGTATCCGAGGATTCCACTTCAAGGGTGATCGTCTTACCAGTCAGAGTTTT 513
Query 138600 TACAAAAATCTGCAT 138614
|| || || |||||
Sbjct 514 CACGAATATTTGCAT 528
Score = 102 bits (112), Expect = 8e-17
Identities = 141/195 (72%), Gaps = 2/195 (1%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
||||| || || |||||||| ||| | ||| || ||||||||| || |||||||
Sbjct 107 GACTCTTTCTGGATGTTGTAATCGGAAAGAGTGCGACCGTCCTCGAGCTGCTTACCGGCG 166
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
|||| |||||||| |||||||| || || ||||| || || ||| | || || || |
Sbjct 167 AAGATGAGACGCTGCTGGTCCGGGGGGATGCCTTCCTTATCC-TGAATCTTAGTCTTGAC 225
Query 138541 TGT-TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599
| || | ||||||| || |||||||| | || | || || ||||| || || ||
Sbjct 226 GTTCTCAATAGTGTCGGAGGATTCCACCTCAAGAGTAATGGTCTTTCCAGTAAGGGTCTT 285
Query 138600 TACAAAAATCTGCAT 138614
|| |||||||||||
Sbjct 286 CACGAAAATCTGCAT 300
Score = 102 bits (112), Expect = 8e-17
Identities = 139/194 (72%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| || ||||||||||| | |||||| ||| ||||| || || || |
Sbjct 1337 GACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCGTCTTCGAGCTGCTTGCCAGCG 1396
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
|||| ||||| || |||||||| || |||||||| ||||| ||| || || |
Sbjct 1397 AAGATAAGACGTTGCTGGTCCGGGGGAATACCTTCCTTGTCCTGGATCTTGGTCTTGACA 1456
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
| || | |||||||| |||||||| |||| || | || || || || | |||||
Sbjct 1457 TTCTCGATGGTGTCGGAAGACTCCACTTCGAGAGTAATAGTCTTGCCTGTTAAGGTTTTA 1516
Query 138601 ACAAAAATCTGCAT 138614
||||| ||||||||
Sbjct 1517 ACAAAGATCTGCAT 1530
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
||||| || | ||||| || | ||| | | || |||||||| ||||||||||| |
Sbjct 758 CCGCCGCGAAGACGCAGCACGAGATGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAC 817
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| || || |||||| ||||| ||||| | |||| |||||||| |||||||| ||
Sbjct 818 AGGGTGCGACCGTCCTCAAGTTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGGGGG 877
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGT-TTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566
|| ||||| || || ||| | || || || | | || | ||||||| ||||| ||
Sbjct 878 ATGCCTTCCTTATC-CTGAATCTTAGTCTTCACGTTCTCGATAGTGTCGGAGGACTCAAC 936
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|| | || | || || || || | || || || |||||||||||
Sbjct 937 TTCAAGAGTGATGGTCTTTCCGGTTAAGGTCTTGACGAAAATCTGCAT 984
Score = 89.7 bits (98), Expect = 5e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || ||||| || | || | ||| | | || ||||| ||||||||||||||
Sbjct 530 CCACCACGCAAGCGAAGTACGAGATGCAAAGTGGATTCCTTCTGAATGTTGTAGTCAGAA 589
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| || || ||||||||||| || || | |||| ||||| || || ||||| ||
Sbjct 590 AGGGTGCGGCCATCCTCGAGTTGCTTTCCAGCGAAGATAAGACGTTGCTGATCCGGGGGG 649
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGT-TTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566
|||||||| ||||| ||| | || || || | | || | ||| || | || || ||
Sbjct 650 ATACCTTCCTTGTC-TTGAATCTTAGTCTTCACGTTCTCGATGGTATCAGAGGATTCGAC 708
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|| | || | || || ||||| ||||| || ||||||||||||||
Sbjct 709 TTCAAGAGTAATGGTCTTTCCAGTAAGAGTCTTGACAAAAATCTGCAT 756
Score = 84.2 bits (92), Expect = 2e-11
Identities = 137/195 (70%), Gaps = 2/195 (1%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| || || ||||||||| | ||| || ||| ||||| || || || |
Sbjct 1109 GACTCCTTCTGGATATTGTAGTCGGAAAGAGTGCGACCGTCTTCGAGCTGCTTGCCAGCG 1168
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
| || || || || |||||||| || |||||||| ||||| ||| |||| || ||||
Sbjct 1169 AAAATGAGTCGTTGCTGGTCCGGGGGAATACCTTCCTTGTCC-TGAATTTTGGTCTTAAC 1227
Query 138541 TGT-TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599
| || | ||||||| ||||| || || | || | || || || || | || ||
Sbjct 1228 GTTCTCGATAGTGTCGGAGGACTCAACTTCAAGAGTGATGGTCTTTCCGGTTAAGGTCTT 1287
Query 138600 TACAAAAATCTGCAT 138614
|| |||||||||||
Sbjct 1288 GACGAAAATCTGCAT 1302
>seq3070
Length=537
Score = 102 bits (112), Expect = 8e-17
Identities = 162/229 (71%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || || | ||| | || | ||||| | |||||||| ||||||||||||||| |
Sbjct 251 CCACCACGAAGACGGAGCACAAGATGTAGAGTAGACTCCTTCTGAATGTTGTAGTCGGAC 192
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||| || ||||| ||||| || || | | |||| || ||||| || ||||||||
Sbjct 191 AGAGTGCGGTCATCCTCCAGTTGCTTTCCCGCAAAGATGAGGCGCTGCTGATCCGGAGGA 132
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTT--AATTGTTCCACGGTGTCGGTCGACTCCA 138565
|| ||||| ||||| ||| | || || || |||| | | | | |||| ||||| |
Sbjct 131 ATTCCTTCCTTGTC-CTGAATCTTGGTCTTCACATTGCT-GATGCTATCGGATGACTCTA 74
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
| |||| || | || || || || || ||||| || || ||||||||
Sbjct 73 CTTCGAGAGTGATAGTCTTTCCGGTTAGCGTTTTGACGAAGATCTGCAT 25
>seq8
Length=1068389
Score = 82.4 bits (90), Expect = 8e-11
Identities = 138/196 (70%), Gaps = 4/196 (2%)
Strand=Plus/Minus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
||||| || || ||||||||||| || || || ||||| || || || ||||
Sbjct 631803 GACTCTTTCTGGATGTTGTAGTCAGACAGGGTTCGACCATCCTCAAGCTGCTTTCCGGCG 631744
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539
|||| || ||||| || ||||| || || || || ||||| ||| | || | || |
Sbjct 631743 AAGATGAGTCGCTGCTGATCCGGGGGAATGCCCTCCTTGTC-CTGAATCTTCGACTTGAC 631685
Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598
||| || | ||| || | ||||||||||||| || | || ||||| || || || |
Sbjct 631684 GTTG-TCGATGGTATCAGATGACTCCACCTCGAGGGTGATAGTCTTACCGGTGAGGGTCT 631626
Query 138599 TTACAAAAATCTGCAT 138614
| ||||| ||||||||
Sbjct 631625 TGACAAAGATCTGCAT 631610
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496242220730160
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