Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12- 21] 3,253 sequences; 60,403,714 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq6 122 9e-23 seq19 113 4e-20 seq1388 105 7e-18 seq3070 102 8e-17 seq8 82.4 8e-11 >seq6 Length=1299473 Score = 122 bits (134), Expect = 9e-23 Identities = 345/520 (66%), Gaps = 19/520 (4%) Strand=Plus/Minus Query 52326 GTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCC 52385 || || ||| | || || |||||| | ||||| || ||||||| || |||| | | Sbjct 1189068 GTTCCCTGCATCCGAAAGAAGGCTGACTGGGCCATCCGGTGGATCCAG---GACAAGGAC 1189012 Query 52386 ACGC---TGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGC 52442 || | ||| ||||| |||| ||||| || || ||||| | || || ||| Sbjct 1189011 TCGTCCTTTGCCCAGCGCCTGGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGCGGT 1188952 Query 52443 AGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGC 52502 |||||| ||||||| | | || | | ||| | ||||| |||||||| ||| | Sbjct 1188951 GCCTTTGCTTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGCCTGACCTTCTCC 1188892 Query 52503 AACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAG 52562 |||||| |||| || || || || || || ||||| ||||| || ||||| || || Sbjct 1188891 AACGAGCTGATTTCTCGTGATGAGGGCCTTCACACTGACTTCGCCTGCCTG--CTCCA-- 1188836 Query 52563 ACGCGCGTGACCGAAAAATTGGATTCGGAC-ACGATCCTG--AG-CATGTTCAAGGAGGC 52618 | | | | | ||| | | | | | | |||| | || ||| ||| || || Sbjct 1188835 -CTCTCAT--CTGAAGGGTCGTGCTAGCAAGAAGATCATCGAAGACATCATCACTGATGC 1188779 Query 52619 GGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAA 52678 || | ||||| |||||||| | || | || ||||| || ||||| |||||||| Sbjct 1188778 CGTCACCATCGAGAAGGAGTTCCTCACCGAGGCTCTGCCCTGCGCCCTGCTCGGCATGAA 1188719 Query 52679 CGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGG 52738 | | | |||| ||||||| ||||| || || |||||||| | || ||||| Sbjct 1188718 CTCTGACCTCATGAAGCAGTACATTGAGTTCGTTGCCGATCGTCTTCTTGTCGCTCTCGG 1188659 Query 52739 GCAGCCA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTG 52797 || | | ||| || ||| | ||| || || || || ||| | ||||| || || | Sbjct 1188658 -CAACGAGAAGGTCTACAAGTCGACCAACCCCTTCGACTTCATGGAGAACATCTCCCTCG 1188600 Query 52798 AGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 |||||||||||||| ||||||||||| ||||| || || Sbjct 1188599 GTGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGACTA 1188560 >seq19 Length=502728 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| || |||||||||||||||| ||| || |||||||| || ||||| | | | Sbjct 172609 CTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCATCCTCGAGCTGCTTACCAGCAAA 172668 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTG 138542 ||| || ||||| |||||||| || || || || ||||| ||| || || | | Sbjct 172669 GATAAGTCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTT 172728 Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 || | |||||||| ||||||||||| | || | ||| || || || || || || || Sbjct 172729 GTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGAC 172788 Query 138603 AAAAATCTGCAT 138614 || |||||||| Sbjct 172789 GAAGATCTGCAT 172800 >seq1388 Length=1638 Score = 105 bits (116), Expect = 7e-18 Identities = 142/195 (73%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| || || |||||||| ||| | || || |||||| || || ||||| | Sbjct 335 GACTCTTTCTGGATGTTGTAATCGGAGAGGGTGCGACCGTCCTCAAGCTGCTTACCAGCG 394 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGT-TTTAA 138539 |||| ||||| || ||||||||||| |||||||| ||||| ||| |||| || || | Sbjct 395 AAGATGAGACGTTGCTGGTCCGGAGGAATACCTTCCTTGTC-CTGAATTTTAGTCTTCAC 453 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | ||| || | || ||||| || | || | ||| ||||||||||||||||| Sbjct 454 ATTCTCAATGGTATCCGAGGATTCCACTTCAAGGGTGATCGTCTTACCAGTCAGAGTTTT 513 Query 138600 TACAAAAATCTGCAT 138614 || || || ||||| Sbjct 514 CACGAATATTTGCAT 528 Score = 102 bits (112), Expect = 8e-17 Identities = 141/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| || || |||||||| ||| | ||| || ||||||||| || ||||||| Sbjct 107 GACTCTTTCTGGATGTTGTAATCGGAAAGAGTGCGACCGTCCTCGAGCTGCTTACCGGCG 166 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| |||||||| || || ||||| || || ||| | || || || | Sbjct 167 AAGATGAGACGCTGCTGGTCCGGGGGGATGCCTTCCTTATCC-TGAATCTTAGTCTTGAC 225 Query 138541 TGT-TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | ||||||| || |||||||| | || | || || ||||| || || || Sbjct 226 GTTCTCAATAGTGTCGGAGGATTCCACCTCAAGAGTAATGGTCTTTCCAGTAAGGGTCTT 285 Query 138600 TACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 286 CACGAAAATCTGCAT 300 Score = 102 bits (112), Expect = 8e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | |||||| ||| ||||| || || || | Sbjct 1337 GACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCGTCTTCGAGCTGCTTGCCAGCG 1396 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| ||||| || |||||||| || |||||||| ||||| ||| || || | Sbjct 1397 AAGATAAGACGTTGCTGGTCCGGGGGAATACCTTCCTTGTCCTGGATCTTGGTCTTGACA 1456 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||||| |||||||| |||| || | || || || || | ||||| Sbjct 1457 TTCTCGATGGTGTCGGAAGACTCCACTTCGAGAGTAATAGTCTTGCCTGTTAAGGTTTTA 1516 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 1517 ACAAAGATCTGCAT 1530 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | ||||| || | ||| | | || |||||||| ||||||||||| | Sbjct 758 CCGCCGCGAAGACGCAGCACGAGATGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAC 817 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||| ||||| ||||| | |||| |||||||| |||||||| || Sbjct 818 AGGGTGCGACCGTCCTCAAGTTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGGGGG 877 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGT-TTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| || || ||| | || || || | | || | ||||||| ||||| || Sbjct 878 ATGCCTTCCTTATC-CTGAATCTTAGTCTTCACGTTCTCGATAGTGTCGGAGGACTCAAC 936 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || || || | || || || ||||||||||| Sbjct 937 TTCAAGAGTGATGGTCTTTCCGGTTAAGGTCTTGACGAAAATCTGCAT 984 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || ||||| || | || | ||| | | || ||||| |||||||||||||| Sbjct 530 CCACCACGCAAGCGAAGTACGAGATGCAAAGTGGATTCCTTCTGAATGTTGTAGTCAGAA 589 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||||||||| || || | |||| ||||| || || ||||| || Sbjct 590 AGGGTGCGGCCATCCTCGAGTTGCTTTCCAGCGAAGATAAGACGTTGCTGATCCGGGGGG 649 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGT-TTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 |||||||| ||||| ||| | || || || | | || | ||| || | || || || Sbjct 650 ATACCTTCCTTGTC-TTGAATCTTAGTCTTCACGTTCTCGATGGTATCAGAGGATTCGAC 708 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || ||||| ||||| || |||||||||||||| Sbjct 709 TTCAAGAGTAATGGTCTTTCCAGTAAGAGTCTTGACAAAAATCTGCAT 756 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/195 (70%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || || ||||||||| | ||| || ||| ||||| || || || | Sbjct 1109 GACTCCTTCTGGATATTGTAGTCGGAAAGAGTGCGACCGTCTTCGAGCTGCTTGCCAGCG 1168 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 | || || || || |||||||| || |||||||| ||||| ||| |||| || |||| Sbjct 1169 AAAATGAGTCGTTGCTGGTCCGGGGGAATACCTTCCTTGTCC-TGAATTTTGGTCTTAAC 1227 Query 138541 TGT-TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | ||||||| ||||| || || | || | || || || || | || || Sbjct 1228 GTTCTCGATAGTGTCGGAGGACTCAACTTCAAGAGTGATGGTCTTTCCGGTTAAGGTCTT 1287 Query 138600 TACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 1288 GACGAAAATCTGCAT 1302 >seq3070 Length=537 Score = 102 bits (112), Expect = 8e-17 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || | ||||| | |||||||| ||||||||||||||| | Sbjct 251 CCACCACGAAGACGGAGCACAAGATGTAGAGTAGACTCCTTCTGAATGTTGTAGTCGGAC 192 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||||| ||||| || || | | |||| || ||||| || |||||||| Sbjct 191 AGAGTGCGGTCATCCTCCAGTTGCTTTCCCGCAAAGATGAGGCGCTGCTGATCCGGAGGA 132 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTT--AATTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||| ||||| ||| | || || || |||| | | | | |||| ||||| | Sbjct 131 ATTCCTTCCTTGTC-CTGAATCTTGGTCTTCACATTGCT-GATGCTATCGGATGACTCTA 74 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | |||| || | || || || || || ||||| || || |||||||| Sbjct 73 CTTCGAGAGTGATAGTCTTTCCGGTTAGCGTTTTGACGAAGATCTGCAT 25 >seq8 Length=1068389 Score = 82.4 bits (90), Expect = 8e-11 Identities = 138/196 (70%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| || || ||||||||||| || || || ||||| || || || |||| Sbjct 631803 GACTCTTTCTGGATGTTGTAGTCAGACAGGGTTCGACCATCCTCAAGCTGCTTTCCGGCG 631744 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| || ||||| || ||||| || || || || ||||| ||| | || | || | Sbjct 631743 AAGATGAGTCGCTGCTGATCCGGGGGAATGCCCTCCTTGTC-CTGAATCTTCGACTTGAC 631685 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | ||| || | ||||||||||||| || | || ||||| || || || | Sbjct 631684 GTTG-TCGATGGTATCAGATGACTCCACCTCGAGGGTGATAGTCTTACCGGTGAGGGTCT 631626 Query 138599 TTACAAAAATCTGCAT 138614 | ||||| |||||||| Sbjct 631625 TGACAAAGATCTGCAT 631610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496242220730160