Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12-
21] 3,253 sequences; 60,403,714 total letters
Query= NC_011423.1
Length=111724
Score E
Sequences producing significant alignments: (Bits) Value
seq1388 113 3e-20
seq8 84.2 2e-11
>seq1388
Length=1638
Score = 113 bits (124), Expect = 3e-20
Identities = 148/205 (72%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032
|||||| ||||| ||||| || |||||||||||| ||| | | |||| || | ||
Sbjct 325 ATGAAGAGTAGACTCTTTCTGGATGTTGTAATCGGAGAGGGTGCGACCGTCCTCAAGCTG 384
Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092
|| |||||| | || | ||| || ||||| ||||| ||||||||||| ||||||
Sbjct 385 CTTACCAGCGAAGATGAGACGTTGCTGGTCCGGAGGAATACCTTCCTTGTCCTGAATTTT 444
Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152
| || ||| | || || ||||| ||| || || | ||| || || ||||| ||
Sbjct 445 AGTCTTCACATTCTCAATGGTATCCGAGGATTCCACTTCAAGGGTGATCGTCTTACCAGT 504
Query 15153 CAGAGTTTTTACAAAAATTTGCATA 15177
||||||||| || || |||||||||
Sbjct 505 CAGAGTTTTCACGAATATTTGCATA 529
Score = 84.2 bits (92), Expect = 2e-11
Identities = 141/204 (69%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033
|| ||||| || || || || |||||||| || ||| | | ||||||| | ||
Sbjct 1328 TGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCGTCTTCGAGCTGC 1387
Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093
||||||||| | || | ||| || ||||| ||||| ||||||||||| || |||
Sbjct 1388 TTGCCAGCGAAGATAAGACGTTGCTGGTCCGGGGGAATACCTTCCTTGTCCTGGATCTTG 1447
Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153
| || ||| | || || || ||| | || || || | ||||| || || |||||
Sbjct 1448 GTCTTGACATTCTCGATGGTGTCGGAAGACTCCACTTCGAGAGTAATAGTCTTGCCTGTT 1507
Query 15154 AGAGTTTTTACAAAAATTTGCATA 15177
| ||||| ||||| || ||||||
Sbjct 1508 AAGGTTTTAACAAAGATCTGCATA 1531
Score = 82.4 bits (90), Expect = 5e-11
Identities = 140/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033
||||| ||||| ||||| || |||||||||||| ||| | | |||| || | ||
Sbjct 98 TGAAGAGTAGACTCTTTCTGGATGTTGTAATCGGAAAGAGTGCGACCGTCCTCGAGCTGC 157
Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093
|| || ||| | || | |||||| ||||| || || |||||||| || ||| ||
Sbjct 158 TTACCGGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCTTCCTTATCCTGAATCTTA 217
Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153
| || || | || ||||| ||| ||| || || | |||||||| || || ||
Sbjct 218 GTCTTGACGTTCTCAATAGTGTCGGAGGATTCCACCTCAAGAGTAATGGTCTTTCCAGTA 277
Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176
|| || || || ||||| |||||
Sbjct 278 AGGGTCTTCACGAAAATCTGCAT 300
>seq8
Length=1068389
Score = 84.2 bits (92), Expect = 2e-11
Identities = 141/204 (69%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033
||||||||||| || || || |||||||||||||| || | | | || || | ||
Sbjct 632040 TGAAGGGTAGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCATCCTCCAGCTGC 631981
Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093
|| ||||| | || | ||||| |||||| ||||| || |||||||| ||| ||
Sbjct 631980 TTACCAGCAAAGATAAGTCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATCTTC 631921
Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153
|| ||| | || || |||||||| || || || | || || || || || |||
Sbjct 631920 GACTTCACATTGTCGATGGTATCGCTGGACTCGACCTCAAGAGTGATCGTCTTTCCGGTC 631861
Query 15154 AGAGTTTTTACAAAAATTTGCATA 15177
|| || || || || || ||||||
Sbjct 631860 AGGGTCTTCACGAAGATCTGCATA 631837
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 357377830859105
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |