Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12-
21] 3,253 sequences; 60,403,714 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq1388 122 8e-23
seq3070 89.7 5e-13
>seq1388
Length=1638
Score = 122 bits (134), Expect = 8e-23
Identities = 167/231 (72%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
||||| |||||||| | | ||| || ||||| || || ||||| |||||||| || |||
Sbjct 1073 ATTCCACCGCGGAGACGGAGCACAAGGTGCAGGGTGGACTCCTTCTGGATATTGTAGTCG 1132
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| || | || || | || || || ||| | || | |||||||||||||||
Sbjct 1133 GAAAGAGTGCGACCGTCTTCGAGCTGCTTGCCAGCGAAAATGAGTCGTTGCTGGTCCGGG 1192
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289
||||| ||||| || || |||| |||| || | | || | || | |||||||| |||||
Sbjct 1193 GGAATACCTTCCTTGTCCTGAA-TTTTGGTCTTAACGTTCTCGATAGTGTCGGAGGACTC 1251
Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||||| ||||| | || || ||||||| || || || ||||| |||||
Sbjct 1252 AACTTCAAGAGTGATGGTCTTTCCGGTTAAGGTCTTGACGAAAATCTGCAT 1302
Score = 116 bits (128), Expect = 3e-21
Identities = 166/231 (72%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
||||| ||||| || | || ||| ||||| || || |||||||||||||| || || ||
Sbjct 755 ATTCCGCCGCGAAGACGCAGCACGAGATGAAGAGTAGATTCCTTTTGGATGTTGTAGTCA 814
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| ||| | || || | ||| || || ||| | || | || |||||||||||
Sbjct 815 GACAGGGTGCGACCGTCCTCAAGTTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGG 874
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289
|| |||||||| ||||| |||| | || || | || | || | |||||||| |||||
Sbjct 875 GGGATGCCTTCCTTATCCTGAA-TCTTAGTCTTCACGTTCTCGATAGTGTCGGAGGACTC 933
Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||||| ||||| | || || ||||||| || || || ||||| |||||
Sbjct 934 AACTTCAAGAGTGATGGTCTTTCCGGTTAAGGTCTTGACGAAAATCTGCAT 984
Score = 113 bits (124), Expect = 4e-20
Identities = 163/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
||||| |||||||| | | ||| || ||||| || || ||||| ||||| || || ||
Sbjct 1301 ATTCCACCGCGGAGACGGAGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCA 1360
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| || || || | || || || ||| | || | ||||||||||||||
Sbjct 1361 GAAAGAGTACGGCCGTCTTCGAGCTGCTTGCCAGCGAAGATAAGACGTTGCTGGTCCGGG 1420
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
||||| ||||| || || || || || |||| || | |||||||||||||||
Sbjct 1421 GGAATACCTTCCTTGTCCTGGATCTTGGTCTTGACATTCTCGATGGTGTCGGAAGACTCC 1480
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||||||||||||| || ||||| |||| ||||| ||||| || |||||
Sbjct 1481 ACTTCGAGAGTAATAGTCTTGCCTGTTAAGGTTTTAACAAAGATCTGCAT 1530
Score = 102 bits (112), Expect = 7e-17
Identities = 165/233 (71%), Gaps = 6/233 (3%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
||||| || || || | | ||| ||||| || || || || || ||||| || ||||||
Sbjct 299 ATTCCACCACGTAGACGGAGCACAAGATGAAGAGTAGACTCTTTCTGGATGTTGTAATCG 358
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
|| ||| | || || | || || || ||| | || | ||||||||||||||
Sbjct 359 GAGAGGGTGCGACCGTCCTCAAGCTGCTTACCAGCGAAGATGAGACGTTGCTGGTCCGGA 418
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGC-TTCT--ACGGTGTCGGAAGAC 45287
||||| ||||| || || |||| |||| || | || | |||| | ||| || || ||
Sbjct 419 GGAATACCTTCCTTGTCCTGAA-TTTTAGTCT--TCACATTCTCAATGGTATCCGAGGAT 475
Query 45288 TCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| ||||| || || | ||| || || || |||||||| || || ||||||||
Sbjct 476 TCCACTTCAAGGGTGATCGTCTTACCAGTCAGAGTTTTCACGAATATTTGCAT 528
>seq3070
Length=537
Score = 89.7 bits (98), Expect = 5e-13
Identities = 151/214 (71%), Gaps = 6/214 (3%)
Strand=Plus/Minus
Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCG 45188
||| ||||| || || || ||||| || || || || ||| ||| | | | |||
Sbjct 234 CACAAGATGTAGAGTAGACTCCTTCTGAATGTTGTAGTCG--GACAGAGTGCGGTCATCC 177
Query 45189 TCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCT 45248
|||| ||| ||||| || | || | || ||||| ||||| ||||| ||||| || ||
Sbjct 176 TCCAGTTGCTTTCCCGCAAAGATGAGGCGCTGCTGATCCGGAGGAATTCCTTCCTTGTCC 117
Query 45249 TGAATTTTTTGTTTGATCGCTTCT-ACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGT 45307
||||| || || | | | || | | | ||||| ||||| ||||||||||| | ||
Sbjct 116 TGAATCTTGGTCTTCA-CATTGCTGATGCTATCGGATGACTCTACTTCGAGAGTGATAGT 58
Query 45308 TTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341
|| |||||||| ||||| || || || ||||||
Sbjct 57 CTTTCCGGTTAGCGTTTTGACGAAGATCTGCATC 24
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451984820419880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |