Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12- 21] 3,253 sequences; 60,403,714 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1388 122 8e-23 seq3070 89.7 5e-13 >seq1388 Length=1638 Score = 122 bits (134), Expect = 8e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| |||||||| | | ||| || ||||| || || ||||| |||||||| || ||| Sbjct 1073 ATTCCACCGCGGAGACGGAGCACAAGGTGCAGGGTGGACTCCTTCTGGATATTGTAGTCG 1132 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | || || | || || || ||| | || | ||||||||||||||| Sbjct 1133 GAAAGAGTGCGACCGTCTTCGAGCTGCTTGCCAGCGAAAATGAGTCGTTGCTGGTCCGGG 1192 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| ||||| || || |||| |||| || | | || | || | |||||||| ||||| Sbjct 1193 GGAATACCTTCCTTGTCCTGAA-TTTTGGTCTTAACGTTCTCGATAGTGTCGGAGGACTC 1251 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| ||||| | || || ||||||| || || || ||||| ||||| Sbjct 1252 AACTTCAAGAGTGATGGTCTTTCCGGTTAAGGTCTTGACGAAAATCTGCAT 1302 Score = 116 bits (128), Expect = 3e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| ||||| || | || ||| ||||| || || |||||||||||||| || || || Sbjct 755 ATTCCGCCGCGAAGACGCAGCACGAGATGAAGAGTAGATTCCTTTTGGATGTTGTAGTCA 814 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | || || | ||| || || ||| | || | || ||||||||||| Sbjct 815 GACAGGGTGCGACCGTCCTCAAGTTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGG 874 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || |||||||| ||||| |||| | || || | || | || | |||||||| ||||| Sbjct 875 GGGATGCCTTCCTTATCCTGAA-TCTTAGTCTTCACGTTCTCGATAGTGTCGGAGGACTC 933 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| ||||| | || || ||||||| || || || ||||| ||||| Sbjct 934 AACTTCAAGAGTGATGGTCTTTCCGGTTAAGGTCTTGACGAAAATCTGCAT 984 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| |||||||| | | ||| || ||||| || || ||||| ||||| || || || Sbjct 1301 ATTCCACCGCGGAGACGGAGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCA 1360 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || || || | || || || ||| | || | |||||||||||||| Sbjct 1361 GAAAGAGTACGGCCGTCTTCGAGCTGCTTGCCAGCGAAGATAAGACGTTGCTGGTCCGGG 1420 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| ||||| || || || || || |||| || | ||||||||||||||| Sbjct 1421 GGAATACCTTCCTTGTCCTGGATCTTGGTCTTGACATTCTCGATGGTGTCGGAAGACTCC 1480 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||||||||||| || ||||| |||| ||||| ||||| || ||||| Sbjct 1481 ACTTCGAGAGTAATAGTCTTGCCTGTTAAGGTTTTAACAAAGATCTGCAT 1530 Score = 102 bits (112), Expect = 7e-17 Identities = 165/233 (71%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || || || | | ||| ||||| || || || || || ||||| || |||||| Sbjct 299 ATTCCACCACGTAGACGGAGCACAAGATGAAGAGTAGACTCTTTCTGGATGTTGTAATCG 358 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| | || || | || || || ||| | || | |||||||||||||| Sbjct 359 GAGAGGGTGCGACCGTCCTCAAGCTGCTTACCAGCGAAGATGAGACGTTGCTGGTCCGGA 418 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGC-TTCT--ACGGTGTCGGAAGAC 45287 ||||| ||||| || || |||| |||| || | || | |||| | ||| || || || Sbjct 419 GGAATACCTTCCTTGTCCTGAA-TTTTAGTCT--TCACATTCTCAATGGTATCCGAGGAT 475 Query 45288 TCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || || | ||| || || || |||||||| || || |||||||| Sbjct 476 TCCACTTCAAGGGTGATCGTCTTACCAGTCAGAGTTTTCACGAATATTTGCAT 528 >seq3070 Length=537 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/214 (71%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCG 45188 ||| ||||| || || || ||||| || || || || ||| ||| | | | ||| Sbjct 234 CACAAGATGTAGAGTAGACTCCTTCTGAATGTTGTAGTCG--GACAGAGTGCGGTCATCC 177 Query 45189 TCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCT 45248 |||| ||| ||||| || | || | || ||||| ||||| ||||| ||||| || || Sbjct 176 TCCAGTTGCTTTCCCGCAAAGATGAGGCGCTGCTGATCCGGAGGAATTCCTTCCTTGTCC 117 Query 45249 TGAATTTTTTGTTTGATCGCTTCT-ACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGT 45307 ||||| || || | | | || | | | ||||| ||||| ||||||||||| | || Sbjct 116 TGAATCTTGGTCTTCA-CATTGCTGATGCTATCGGATGACTCTACTTCGAGAGTGATAGT 58 Query 45308 TTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || |||||||| ||||| || || || |||||| Sbjct 57 CTTTCCGGTTAGCGTTTTGACGAAGATCTGCATC 24 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451984820419880