Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12- 21] 3,253 sequences; 60,403,714 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1388 129 7e-25 seq19 125 8e-24 seq15 114 1e-20 seq8 109 6e-19 seq3070 98.7 1e-15 >seq1388 Length=1638 Score = 129 bits (142), Expect = 7e-25 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||| || |||| || |||||| ||||| |||||||| || ||||| || | Sbjct 1315 ACGGAGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCC 1374 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| |||||||||||||| ||||| || | || |||||||| | || | | ||||| Sbjct 1375 GTCTTCGAGCTGCTTGCCAGCGAAGATAAGACGTTGCTGGTCCGGGGGAATACCTTCCTT 1434 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 |||| |||||| |||||| || | | |||||| || ||||| || | || || Sbjct 1435 GTCCTGGATCTTGGTCTTGACATTCTCGATGGTGTCGGAAGACTCCACTTCGAGAGTAAT 1494 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||| || | |||||||||||||| ||||| Sbjct 1495 AGTCTTGCCTGTTAAGGTTTTAACAAAGATCTGCAT 1530 Score = 122 bits (134), Expect = 1e-22 Identities = 157/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||| || || | ||| ||| || ||||| ||||| ||||| |||||||| | Sbjct 85 ACGAAGCACAAGGTGAAGAGTAGACTCTTTCTGGATGTTGTAATCGGAAAGAGTGCGACC 144 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| ||||||||||| |||||||| || | ||||||||||| | || | || ||||| Sbjct 145 GTCCTCGAGCTGCTTACCGGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCTTCCTT 204 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 ||| ||||| |||||| || | | |||||| |||||||| || | || || Sbjct 205 ATCCTGAATCTTAGTCTTGACGTTCTCAATAGTGTCGGAGGATTCCACCTCAAGAGTAAT 264 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 ||| || || || || || || || || || |||||| Sbjct 265 GGTCTTTCCAGTAAGGGTCTTCACGAAAATCTGCATT 301 Score = 113 bits (124), Expect = 5e-20 Identities = 155/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||| || |||| || |||||| ||||||||||||||||| |||||||| | Sbjct 1087 ACGGAGCACAAGGTGCAGGGTGGACTCCTTCTGGATATTGTAGTCGGAAAGAGTGCGACC 1146 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| |||||||||||||| ||||| || | || |||||||| | || | | ||||| Sbjct 1147 GTCTTCGAGCTGCTTGCCAGCGAAAATGAGTCGTTGCTGGTCCGGGGGAATACCTTCCTT 1206 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 |||| || || |||| | || | | |||||| || || || || | ||||| Sbjct 1207 GTCCTGAATTTTGGTCTTAACGTTCTCGATAGTGTCGGAGGACTCAACTTCAAGAGTGAT 1266 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 ||| || || || | || || || || || |||||| Sbjct 1267 GGTCTTTCCGGTTAAGGTCTTGACGAAAATCTGCATT 1303 Score = 104 bits (114), Expect = 3e-17 Identities = 153/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| ||| ||||| | ||| ||||||||||| |||||||| || || ||||| | Sbjct 769 ACGCAGCACGAGATGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGACAGGGTGCGACC 828 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || || ||||| || ||||| || | ||||||||||| | || | || ||||| Sbjct 829 GTCCTCAAGTTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCTTCCTT 888 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 ||| ||||| |||| | || | | |||||| || || || || | ||||| Sbjct 889 ATCCTGAATCTTAGTCTTCACGTTCTCGATAGTGTCGGAGGACTCAACTTCAAGAGTGAT 948 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 ||| || || || | || || || || || |||||| Sbjct 949 GGTCTTTCCGGTTAAGGTCTTGACGAAAATCTGCATT 985 >seq19 Length=502728 Score = 125 bits (138), Expect = 8e-24 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||||| || | || |||||||| ||||| ||||||||| |||||||| | || || Sbjct 172591 CACCAAGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCATCCTC 172650 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||||||||| || || || || | ||||||||||| | || | || |||||||||| Sbjct 172651 GAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 172710 Query 46504 GATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTT 46562 |||||| ||||| ||| | | | |||||| || ||||| || | ||||| || | Sbjct 172711 GATCTTGGACTTGA-CGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCT 172769 Query 46563 TGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTGC 46598 | ||||| || || || || ||||| ||||| |||| Sbjct 172770 TCCCCGTGAGGGTCTTGACGAAGATCTGCATCTTGC 172805 >seq15 Length=666898 Score = 114 bits (126), Expect = 1e-20 Identities = 134/181 (74%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| ||||||||||| |||||||| | || || ||||||||||| ||||| | Sbjct 143566 CCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGA 143507 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 ||| ||||||||||| | || | || |||||||||| |||||| ||||| | Sbjct 143506 TCAGTCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 143447 Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583 | | ||||| || || || || | |||||||| |||||||| || || || || | Sbjct 143446 CAATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGA 143387 Query 46584 A 46584 | Sbjct 143386 A 143386 >seq8 Length=1068389 Score = 109 bits (120), Expect = 6e-19 Identities = 132/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || ||||||||||| || ||||| | || || ||||||||||| || || Sbjct 631573 CTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAA 631514 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||||||||||||||| | || | | |||||| ||| ||||||| ||||| | Sbjct 631513 GATCAAGCGCTGCTGGTCCGGGGGAATACCCTCCTTATCCTGGATCTTCGACTTGACATT 631454 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | ||||| || ||||| || | |||||||| ||||| || || || || || Sbjct 631453 GTCGATAGTGTCAGAAGACTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGAC 631394 Score = 107 bits (118), Expect = 2e-18 Identities = 128/171 (75%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| || ||||| |||| ||||||||||| || ||||| Sbjct 631291 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAA 631232 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| ||||||||||| | || | || |||||| ||| ||||||| ||| | ||| Sbjct 631231 GATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTATCCTGGATCTTCGACTTCA-CGT 631173 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCA 46571 | | | || || || || || || | |||||||| || ||||||| Sbjct 631172 TGTCGATAGTATCCGAGGACTCGACCTCAAGGGTGATGGTCTTTCCCGTCA 631122 Score = 102 bits (112), Expect = 9e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 ||||| || | ||| |||||| ||||| ||||| ||| || ||||| | || || Sbjct 632046 ACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCATCCTCC 631987 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 |||||||| || || || || | ||||||||||||| || | || |||||||||| Sbjct 631986 AGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGA 631927 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 |||||| ||| | | | | || ||||| || || || || | ||||| || || Sbjct 631926 ATCTTCGACTTCACATTGTCGATGGTATCGCTGGACTCGACCTCAAGAGTGATCGTCTTT 631867 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||| || || || ||||| ||||| Sbjct 631866 CCGGTCAGGGTCTTCACGAAGATCTGCAT 631838 >seq3070 Length=537 Score = 98.7 bits (108), Expect = 1e-15 Identities = 156/221 (71%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||| ||||| | ||| |||||| || || ||||||||||| |||||||| || Sbjct 240 ACGGAGCACAAGATGTAGAGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGGTC 181 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || || ||||| || || || || | ||||||||| || | || | | ||||| Sbjct 180 ATCCTCCAGTTGCTTTCCCGCAAAGATGAGGCGCTGCTGATCCGGAGGAATTCCTTCCTT 121 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGC-CACCGTGTCGCTCGATTCCACATCCACCGTGA 46556 |||| ||||| |||| | | | || | | ||| || || || || | |||| Sbjct 120 GTCCTGAATCTTGGTCTTCA-CATTGCTGATGCTATCGGATGACTCTACTTCGAGAGTGA 62 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 | || || || || |||||||| || ||||| ||||| ||| Sbjct 61 TAGTCTTTCCGGTTAGCGTTTTGACGAAGATCTGCATCTTG 21 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565215415993560