Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12-
21] 3,253 sequences; 60,403,714 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq6 127 2e-24
seq19 116 4e-21
seq15 114 1e-20
seq1388 113 5e-20
seq3070 109 5e-19
seq8 107 2e-18
>seq6
Length=1299473
Score = 127 bits (140), Expect = 2e-24
Identities = 322/482 (67%), Gaps = 12/482 (2%)
Strand=Plus/Plus
Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684
||||| || || || || || || | | ||| ||| | ||| || || |||||||||
Sbjct 1188575 TTCTCGAAGAAGTTGGTCTTGCCACCGAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTG 1188634
Query 132685 GCTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAAC 132741
| | |||||| ||| | |||||| || |||| || || | ||||| ||||||
Sbjct 1188635 GTCGACTTGTAGACCTTCTCGTTGCCGAG-AG--CGACAAGAAGACGATCGGCAACGAAC 1188691
Query 132742 TCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGA-CGCACCGGCAGCGCTTC 132800
|| ||||| ||| |||| || | || | || ||||| |||| ||||| || ||
Sbjct 1188692 TCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGAGCAGGGCGCAG-GGCAGAGCCTC 1188750
Query 132801 GGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGC 132860
|||||| || | |||||||| ||| || || |||| ||| || | | | |
Sbjct 1188751 GGTGAGGAACTCCTTCTCGATGGTGACGGCATCAGTGATGATGTCTTCGATGATCTTCTT 1188810
Query 132861 GCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTC 132920
||| | || | || ||| | | || ||| || ||||| || | ||||||
Sbjct 1188811 GCTAGCACGACCCTTCAGATGAGAGTGGAGCAGGCAGGCGAAGTCAGTGTGAAGGCCCTC 1188870
Query 132921 GTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAG 132980
|| | ||||| || |||||| ||| |||| ||| ||||||||||| || || |||||
Sbjct 1188871 ATCACGAGAAATCAGCTCGTTGGAGAAGGTCAGGCCAGGCATGAGGCCACGCTTCTTGAG 1188930
Query 132981 CCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCAC 133040
||| || |||| || || || ||||||| ||||| || || || || || ||
Sbjct 1188931 CCAGAAGATGGAAGCAAAGGCACCGCTGAAGAAGATACCCTCAACAGCAGCAAAGGCAAC 1188990
Query 133041 CAGGCGCTCGCCGAACGTGGCTTCTTTG--CTGGCGATCCAGCGCAGCGCCCATTCGGCC 133098
|||||||| | | || | | || ||| ||| |||||| || | ||||| || |||
Sbjct 1188991 CAGGCGCTGGGCAAAGGACGAGTCCTTGTCCTG--GATCCACCGGATGGCCCAGTCAGCC 1189048
Query 133099 TT 133100
||
Sbjct 1189049 TT 1189050
Score = 100 bits (110), Expect = 3e-16
Identities = 188/276 (68%), Gaps = 3/276 (1%)
Strand=Plus/Plus
Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226
||| ||||| ||||| || || | || ||||| | ||||||||| ||| || ||
Sbjct 1189170 GTAAGTGTCAATGAGTAGGGAGTAGGTCTCAGAGTGGATGTTCTCCATCATGATCTGGAA 1189229
Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286
|||||| ||||| || ||||| | ||| || || ||| | || || || ||
Sbjct 1189230 GCCGTAGAAGCAGCGAGCCTCAGGGATCTGGACCTCGCCGCTGAATCTTTCAACGAGGTT 1189289
Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346
|||||||||||||| || |||||||| ||||||| | ||| || ||| |
Sbjct 1189290 CTCGTTGACGATGCCATCAGATGCGGCGAAGAAGGCCAAGATGTGAGAGACGAAGAACTG 1189349
Query 133347 CTCGTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403
|||| | | ||| ||| | ||| ||| | ||||| ||||| || | ||||||
Sbjct 1189350 TTCGTCGGCAGTCAGGCGGTTGTTCCAATCGTGAAGATCCTTCGACAGATCAATCTCCTC 1189409
Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439
| ||||| || || |||||||| || ||||||||
Sbjct 1189410 CGCAGTCCAGAAAGAGGCCTCGGCCTTCTTGTACAT 1189445
>seq19
Length=502728
Score = 116 bits (128), Expect = 4e-21
Identities = 161/220 (73%), Gaps = 4/220 (2%)
Strand=Plus/Minus
Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
|| ||||| || ||||| || || |||||||| || || |||||| | || || ||| |
Sbjct 172803 AAGATGCAGATCTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 172744
Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359
|||||| | | | |||| | || || |||| ||||| ||||| || ||| | ||
Sbjct 172743 TCCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGA 172685
Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419
||| ||||| || || | || || || ||||| || || | ||||| || | ||||||
Sbjct 172684 CCAGCAGCGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACTCTGAGCGACTA 172625
Query 38420 CAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCG 38458
||||||||| ||||| ||| || || || |||||||| ||
Sbjct 172624 CAACATCCAGAAGGAGAGC-ACTCTCCACTTGGTGCTCCG 172586
>seq15
Length=666898
Score = 114 bits (126), Expect = 1e-20
Identities = 134/181 (74%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312
||||| || || ||||||||||| ||||||||| | || |||||| || | |||| | |
Sbjct 143386 TTCGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACCATT 143445
Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372
| | | || || |||| ||||| ||||| || ||| | ||||| ||||| ||
Sbjct 143446 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGACTG 143505
Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432
|| | ||| ||||| ||||| || || | ||||| ||| ||||||||||||||| |||
Sbjct 143506 ATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACTCTCTCCGACTACAACATCCAGAAG 143565
Query 38433 G 38433
|
Sbjct 143566 G 143566
>seq1388
Length=1638
Score = 113 bits (124), Expect = 5e-20
Identities = 165/230 (72%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302
|||||| || ||||| || || | || || || |||||||| | || || ||| || |
Sbjct 985 AATGCAGATTTTCGTCAAGACCTTAACCGGAAAGACCATCACTCTTGAAGTTGAGTCCTC 926
Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360
||||| | | |||| | |||| || || | || || || || || ||| | |||
Sbjct 925 CGACACTATCGAGAACG--TGAAGACTAAGATTCAGGATAAGGAAGGCATCCCCCCGGAC 868
Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420
|| ||||| ||||| | ||| || || || || || |||| |||||||| ||||||
Sbjct 867 CAGCAGCGTCTCATCTTCGCTGGTAAGCAACTTGAGGACGGTCGCACCCTGTCTGACTAC 808
Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
||||||||||||||| | || || ||| | ||||||||| | | |||||
Sbjct 807 AACATCCAAAAGGAATCTACTCTTCATCTCGTGCTGCGTCTTCGCGGCGG 758
Score = 109 bits (120), Expect = 5e-19
Identities = 157/218 (72%), Gaps = 4/218 (2%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||||||||| ||||| || || || || || |||||| | || || || || |
Sbjct 528 ATGCAAATATTCGTGAAAACTCTGACTGGTAAGACGATCACCCTTGAAGTGGAATCCTCG 469
Query 38304 GACAGCGTGCA-AACGCTTAAAGAA-AAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361
|| | | | | || | | |||| ||||| | ||||| || || ||||| | ||||
Sbjct 468 GATACCATTGAGAATG--TGAAGACTAAAATTCAGGACAAGGAAGGTATTCCTCCGGACC 411
Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421
| || || ||||| | ||| || || ||||| || |||| ||||||||| ||| ||||
Sbjct 410 AGCAACGTCTCATCTTCGCTGGTAAGCAGCTTGAGGACGGTCGCACCCTCTCCGATTACA 351
Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
||||||| || || | || || ||| | ||||| |||
Sbjct 350 ACATCCAGAAAGAGTCTACTCTTCATCTTGTGCTCCGT 313
Score = 95.1 bits (104), Expect = 1e-14
Identities = 154/218 (71%), Gaps = 4/218 (2%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || ||||| | || ||||| || || || |||| || ||| | ||
Sbjct 1530 ATGCAGATCTTTGTTAAAACCTTAACAGGCAAGACTATTACTCTCGAAGTGGAGTCTTCC 1471
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361
|||| | | | || | | |||| || |||| ||||| || || |||||| | ||||
Sbjct 1470 GACACCATCGAGAATG--TCAAGACCAAGATCCAGGACAAGGAAGGTATTCCCCCGGACC 1413
Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421
| || || || || | ||| ||||| ||||| || |||| || || || |||||||
Sbjct 1412 AGCAACGTCTTATCTTCGCTGGCAAGCAGCTCGAAGACGGCCGTACTCTTTCTGACTACA 1353
Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
||||||| ||||| | || ||||| | ||||| |||
Sbjct 1352 ACATCCAGAAGGAGTCCACCCTGCACCTTGTGCTCCGT 1315
Score = 86.0 bits (94), Expect = 6e-12
Identities = 159/230 (69%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302
|||||| || ||||| || || || || || || ||||| || | || || || || |
Sbjct 301 AATGCAGATTTTCGTGAAGACCCTTACTGGAAAGACCATTACTCTTGAGGTGGAATCCTC 242
Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360
||||| | | |||| | |||| || || | || || || || || ||| | |||
Sbjct 241 CGACACTATTGAGAACG--TCAAGACTAAGATTCAGGATAAGGAAGGCATCCCCCCGGAC 184
Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420
|| ||||| ||||| | ||| || || ||||| || |||| ||||| || ||| |||
Sbjct 183 CAGCAGCGTCTCATCTTCGCCGGTAAGCAGCTCGAGGACGGTCGCACTCTTTCCGATTAC 124
Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|||||||| || || | || || || | ||||| ||| || | || ||
Sbjct 123 AACATCCAGAAAGAGTCTACTCTTCACCTTGTGCTTCGTCTGCGTGGTGG 74
>seq3070
Length=537
Score = 109 bits (120), Expect = 5e-19
Identities = 160/222 (72%), Gaps = 6/222 (3%)
Strand=Plus/Plus
Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
|| ||||| || ||||| |||||||| || || || || ||||| |||| || ||| |
Sbjct 22 AAGATGCAGATCTTCGTCAAAACGCTAACCGGAAAGACTATCACTCTCGAAGTAGAGTCA 81
Query 38301 ACCGACAGCGTGCA--AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCC 38357
|||| ||| | || || | | |||| || || | ||||| || |||||||| |
Sbjct 82 TCCGATAGCAT-CAGCAATG--TGAAGACCAAGATTCAGGACAAGGAAGGAATTCCTCCG 138
Query 38358 GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 38417
|| || ||||| ||||| | ||||| || || ||||| || || ||||| || ||||
Sbjct 139 GATCAGCAGCGCCTCATCTTTGCGGGAAAGCAACTGGAGGATGACCGCACTCTGTCCGAC 198
Query 38418 TACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
|||||||| || ||||| | || || ||| | ||||| |||
Sbjct 199 TACAACATTCAGAAGGAGTCTACTCTACATCTTGTGCTCCGT 240
>seq8
Length=1068389
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || || || || || || ||||| | || |||||| ||| |
Sbjct 631838 ATGCAGATCTTCGTGAAGACCCTGACCGGAAAGACGATCACTCTTGAGGTCGAGTCCAGC 631897
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|| | | | | | | || || || | ||||| ||||| |||||| |||||||
Sbjct 631898 GATACCATCGACAATGTGAAGTCGAAGATTCAGGACAAGGAGGGCATTCCCCCCGACCAG 631957
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| || || | || || || |||||||| || | |||||||| | ||| ||||||
Sbjct 631958 CAGCGACTTATCTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACCCTGAGCGATTACAAC 632017
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
||||| ||||| | || || || |||| || ||| | | |||||
Sbjct 632018 ATCCAGAAGGAGTCTACCCTTCACCTGGTCCTCCGTCTTCGTGGCGG 632064
Score = 93.3 bits (102), Expect = 4e-14
Identities = 123/168 (73%), Gaps = 2/168 (1%)
Strand=Plus/Plus
Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGA 38326
||||| || ||||||||| | || |||||| || | || | | | |||| | ||
Sbjct 631124 ACGGGAAAGACCATCACCCTTGAGGTCGAGTCCTCGGATACTATCGACAACG-TGAAGTC 631182
Query 38327 AAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAA 38386
|| |||| || || ||||| || ||| | ||||| ||||| || || | ||| || ||
Sbjct 631183 GAAGATCCAGGATAAGGAGGGCATCCCCCCGGACCAGCAGCGTCTGATCTTCGCTGGAAA 631242
Query 38387 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA 38434
||||| || |||| ||||||||| ||||||||||||||| |||||
Sbjct 631243 GCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGA 631290
Score = 93.3 bits (102), Expect = 4e-14
Identities = 129/181 (71%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 38254 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGC 38313
|||| || || ||||| ||||| ||||||||| |||| || ||| | | |||| |
Sbjct 631392 TCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCTTCTGACACTATCG 631451
Query 38314 AAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCA 38373
| | | || || |||| || || ||||| |||||| | ||||| ||||| | |
Sbjct 631452 ACAATGTCAAGTCGAAGATCCAGGATAAGGAGGGTATTCCCCCGGACCAGCAGCGCTTGA 631511
Query 38374 TTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGG 38433
| | || ||||| ||||| || || | ||||||||| |||||||||||| || ||||
Sbjct 631512 TCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAACATTCAGAAGG 631571
Query 38434 A 38434
|
Sbjct 631572 A 631572
Score = 86.0 bits (94), Expect = 6e-12
Identities = 150/216 (69%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || || || ||||| || || || |||||| |||| || ||| | |
Sbjct 631610 ATGCAGATCTTTGTCAAGACCCTCACCGGTAAGACTATCACCCTCGAGGTGGAGTCATCT 631669
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|| | | | | |||| | || || || | ||||| ||||| |||||| | || ||
Sbjct 631670 GATACCATCGACAACG-TCAAGTCGAAGATTCAGGACAAGGAGGGCATTCCCCCGGATCA 631728
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| ||||| | ||| || || ||||| || || | || ||||| ||||||||
Sbjct 631729 GCAGCGACTCATCTTCGCCGGAAAGCAGCTTGAGGATGGTCGAACCCTGTCTGACTACAA 631788
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
|||||| || || | || || || |||| || ||
Sbjct 631789 CATCCAGAAAGAGTCTACTCTACACCTGGTTCTCCG 631824
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500152461723520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |