Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12-
21] 3,253 sequences; 60,403,714 total letters
Query= NC_014637.1
Length=617453
Score E
Sequences producing significant alignments: (Bits) Value
seq1388 109 2e-18
seq3070 95.1 5e-14
>seq1388
Length=1638
Score = 109 bits (120), Expect = 2e-18
Identities = 119/158 (75%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | || ||||| ||||| ||||||||||| || || || ||||| || ||||| ||
Sbjct 528 ATGCAAATATTCGTGAAAACTCTGACTGGTAAGACGATCACCCTTGAAGTGGAATCCTCG 469
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|||| |||||| | | || |||||||| || |||||||| |||||||| || ||
Sbjct 468 GATACCATTGAGAATGTGAAGACTAAAATTCAGGACAAGGAAGGTATTCCTCCGGACCAG 409
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGG 391207
|||||| | || ||| | || || || ||||| || ||
Sbjct 408 CAACGTCTCATCTTCGCTGGTAAGCAGCTTGAGGACGG 371
Score = 104 bits (114), Expect = 9e-17
Identities = 138/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108
|||| | ||||| || || || || ||||| || || ||||||||||| || ||||| ||
Sbjct 757 AATGCAGATTTTTGTCAAGACTCTTACTGGAAAGACCATTACTCTTGAAGTCGAATCCTC 698
Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168
||||| ||| || | || || |||||||| |||||||| || || || |||||
Sbjct 697 TGATACCATCGAGAACGTGAAGACTAAGATTCAAGACAAGGAAGGTATCCCCCCGGATCA 638
Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228
|||||| | || ||| | || || ||||| || ||||| | || | | || || ||
Sbjct 637 GCAACGTCTTATCTTCGCTGGAAAGCAACTCGAGGATGGCCGCACCCTTTCTGACTACAA 578
Query 391229 TATTGATAAGGA 391240
||| | |||||
Sbjct 577 CATTCAGAAGGA 566
Score = 86.0 bits (94), Expect = 2e-11
Identities = 142/205 (69%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108
|||| | |||||||| || || || ||||| || || ||||||||||| || ||||| ||
Sbjct 301 AATGCAGATTTTCGTGAAGACCCTTACTGGAAAGACCATTACTCTTGAGGTGGAATCCTC 242
Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168
|| | ||||| | || || ||||| ||||||||||| || || || || ||
Sbjct 241 CGACACTATTGAGAACGTCAAGACTAAGATTCAGGATAAGGAAGGCATCCCCCCGGACCA 182
Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228
|| ||| | || ||| | || || || || || || || | ||| | | ||||| ||
Sbjct 181 GCAGCGTCTCATCTTCGCCGGTAAGCAGCTCGAGGACGGTCGCACTCTTTCCGATTACAA 122
Query 391229 TATTGATAAGGATGCAACACTTCAC 391253
|| | || || | || ||||||
Sbjct 121 CATCCAGAAAGAGTCTACTCTTCAC 97
>seq3070
Length=537
Score = 95.1 bits (104), Expect = 5e-14
Identities = 139/193 (72%), Gaps = 4/193 (2%)
Strand=Plus/Plus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | || ||||| ||||| || || || || ||||| ||||| || || || |||||
Sbjct 25 ATGCAGATCTTCGTCAAAACGCTAACCGGAAAGACTATCACTCTCGAAGTAGAGTCATCC 84
Query 391110 GATAACATTGAAGCTAT-TAAACAAAAA-ATTCAAGATAAGGAAGGAATTCCTCCTGATC 391167
|||| ||| ||| || | || | || ||||| || ||||||||||||||||| ||||
Sbjct 85 GATAGCATC--AGCAATGTGAAGACCAAGATTCAGGACAAGGAAGGAATTCCTCCGGATC 142
Query 391168 AACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATA 391227
| || || | || || | || || ||||| || |||| | ||| || | || || |
Sbjct 143 AGCAGCGCCTCATCTTTGCGGGAAAGCAACTGGAGGATGACCGCACTCTGTCCGACTACA 202
Query 391228 ATATTGATAAGGA 391240
| ||| | |||||
Sbjct 203 ACATTCAGAAGGA 215
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1975636053909324
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |