Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12- 21] 3,253 sequences; 60,403,714 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq1388 109 2e-18 seq3070 95.1 5e-14 >seq1388 Length=1638 Score = 109 bits (120), Expect = 2e-18 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| ||||| ||||||||||| || || || ||||| || ||||| || Sbjct 528 ATGCAAATATTCGTGAAAACTCTGACTGGTAAGACGATCACCCTTGAAGTGGAATCCTCG 469 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| |||||| | | || |||||||| || |||||||| |||||||| || || Sbjct 468 GATACCATTGAGAATGTGAAGACTAAAATTCAGGACAAGGAAGGTATTCCTCCGGACCAG 409 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGG 391207 |||||| | || ||| | || || || ||||| || || Sbjct 408 CAACGTCTCATCTTCGCTGGTAAGCAGCTTGAGGACGG 371 Score = 104 bits (114), Expect = 9e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||| || || || || ||||| || || ||||||||||| || ||||| || Sbjct 757 AATGCAGATTTTTGTCAAGACTCTTACTGGAAAGACCATTACTCTTGAAGTCGAATCCTC 698 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||||| ||| || | || || |||||||| |||||||| || || || ||||| Sbjct 697 TGATACCATCGAGAACGTGAAGACTAAGATTCAAGACAAGGAAGGTATCCCCCCGGATCA 638 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 |||||| | || ||| | || || ||||| || ||||| | || | | || || || Sbjct 637 GCAACGTCTTATCTTCGCTGGAAAGCAACTCGAGGATGGCCGCACCCTTTCTGACTACAA 578 Query 391229 TATTGATAAGGA 391240 ||| | ||||| Sbjct 577 CATTCAGAAGGA 566 Score = 86.0 bits (94), Expect = 2e-11 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | |||||||| || || || ||||| || || ||||||||||| || ||||| || Sbjct 301 AATGCAGATTTTCGTGAAGACCCTTACTGGAAAGACCATTACTCTTGAGGTGGAATCCTC 242 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || | ||||| | || || ||||| ||||||||||| || || || || || Sbjct 241 CGACACTATTGAGAACGTCAAGACTAAGATTCAGGATAAGGAAGGCATCCCCCCGGACCA 182 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 || ||| | || ||| | || || || || || || || | ||| | | ||||| || Sbjct 181 GCAGCGTCTCATCTTCGCCGGTAAGCAGCTCGAGGACGGTCGCACTCTTTCCGATTACAA 122 Query 391229 TATTGATAAGGATGCAACACTTCAC 391253 || | || || | || |||||| Sbjct 121 CATCCAGAAAGAGTCTACTCTTCAC 97 >seq3070 Length=537 Score = 95.1 bits (104), Expect = 5e-14 Identities = 139/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| ||||| || || || || ||||| ||||| || || || ||||| Sbjct 25 ATGCAGATCTTCGTCAAAACGCTAACCGGAAAGACTATCACTCTCGAAGTAGAGTCATCC 84 Query 391110 GATAACATTGAAGCTAT-TAAACAAAAA-ATTCAAGATAAGGAAGGAATTCCTCCTGATC 391167 |||| ||| ||| || | || | || ||||| || ||||||||||||||||| |||| Sbjct 85 GATAGCATC--AGCAATGTGAAGACCAAGATTCAGGACAAGGAAGGAATTCCTCCGGATC 142 Query 391168 AACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATA 391227 | || || | || || | || || ||||| || |||| | ||| || | || || | Sbjct 143 AGCAGCGCCTCATCTTTGCGGGAAAGCAACTGGAGGATGACCGCACTCTGTCCGACTACA 202 Query 391228 ATATTGATAAGGA 391240 | ||| | ||||| Sbjct 203 ACATTCAGAAGGA 215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975636053909324