Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12-
21] 3,253 sequences; 60,403,714 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq16 118 1e-21
seq1 111 2e-19
>seq16
Length=594729
Score = 118 bits (130), Expect = 1e-21
Identities = 184/263 (70%), Gaps = 0/263 (0%)
Strand=Plus/Plus
Query 11735 CGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGG 11794
|||||||||| || || ||||| ||||||||||| || || |||||| |||| |
Sbjct 133970 CGAAAAGTTCGCGAACTCGCTTGGCTCCAACACCAACAAAGATCTCATCGAACTCGCTAC 134029
Query 11795 CAGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCT 11854
|||| | | |||||| ||| | |||||||||| |||||| || || |||||||
Sbjct 134030 CAGACATGTAGAAGAAGGGGACACCGGCTTCACCAGCGACGGCTCGTGCAAGAAGAGTCT 134089
Query 11855 TACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAA 11914
| || || ||||| | ||| |||||||| | || ||| | ||||||||| ||
Sbjct 134090 TTCCAGTTCCAGGAGGGCCAACGAGAAGGACACCCTTGGGCAGCTTGGCACCGAGGTCAG 134149
Query 11915 AGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCGGAGT 11974
| | || || |||||||| || || |||| || | ||| ||||||||||| ||
Sbjct 134150 TGAACTTTTCGGGGTTCTTGAGAAACTCAACAACTTCTTGAAGCTCCTCCTTGGCCTCGT 134209
Query 11975 CGATACCCTCAACATCGGTGAAA 11997
| ||| | ||||| |||||
Sbjct 134210 CACAACCGTGGACATCATTGAAA 134232
>seq1
Length=2087327
Score = 111 bits (122), Expect = 2e-19
Identities = 290/432 (67%), Gaps = 24/432 (6%)
Strand=Plus/Plus
Query 11536 TCAAGAATATCGACACGGTTTGTAGCGGCAATGACTACAATGCCAGT-CTCAT-TGTCGA 11593
|| || ||||| | ||||| ||| |||| | || |||| || || | | | ||| ||
Sbjct 1363680 TCGAGCATATCCGCTCGGTTGGTACCGGCCAAAACGACAA--CCTGTTCCCGTGTGTTGA 1363737
Query 11594 AACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCA 11653
| |||||||| || || |||| |||||||| || ||| ||||| |||||| | ||
Sbjct 1363738 ATCCGTCCATCTCGGTAAGAATCTGGTTGAGGGTGGCTTCTCGCTCGTCGTTGCCGC-CA 1363796
Query 11654 TACCACCTGCCGAACGCTTCTTAC---------CGACAGCGTCAATCTCATCGATGAATA 11704
| | | | ||| | || || || ||| || || || || || ||||| |
Sbjct 1363797 AATCCCTTTCCG--CTCTCCTGACGCGCTCGGCCGATGGCATCGATTTCGTCAATGAAGA 1363854
Query 11705 CGATACACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAA 11764
||| || ||| ||| || ||| |||| | || || || || | ||||
Sbjct 1363855 TGATGCAGGGTGCGTTCTTTCGGCCCTCGGCGAACAAGTCTCGCACTCGAGAAGGGCCAA 1363914
Query 11765 CACCTACGAACATCTCAACGAAGTTTGCGGCA-GAACACTGAATGAAGGGAACATTAGAC 11823
|||| ||||||||||| ||||| | | || || ||||| ||||||||| |||
Sbjct 1363915 CACCCACGAACATCTCCACGAACTCGGAACCACTCACGCTGAA-GAAGGGAACGCCCGAC 1363973
Query 11824 TCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGG 11883
|| || || |||| ||| || || |||||||| |||||||| | || || || |
Sbjct 1363974 TCGCCGGCCGTGGCCTTAGCAAGCAGTGTCTTACCAGTACCAGGAGGGCCGGCAAGGATT 1364033
Query 11884 GCGCCACGGGGGATCTTGGCACC--ACTTC-CAAAGTAGCGCTCAGGCTTCTTGAGGAAG 11940
||||| ||||| |||||||| || |||| |||| | ||| |||| ||||||||||
Sbjct 1364034 GCGCCTCGGGGAATCTTGGCTCCCAGCTTCTCAAACT---TCTCGGGCTGCTTGAGGAAG 1364090
Query 11941 TCCACAATCTCC 11952
|||| ||||
Sbjct 1364091 CTGACAAACTCC 1364102
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588952050763400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |