Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12- 21] 3,253 sequences; 60,403,714 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq5 230 3e-55 seq6 111 2e-19 seq16 89.7 6e-13 >seq5 Length=1316942 Score = 230 bits (254), Expect = 3e-55 Identities = 1014/1583 (64%), Gaps = 43/1583 (3%) Strand=Plus/Minus Query 105752 ATTTCCCACACTGTGCGGTAGAGATTCTTGATATCATCTGGGATATCTGAGATATTTTGA 105811 || |||||||| || ||| ||| |||||||||| | || || | | ||| | || Sbjct 715282 ATCTCCCACACAGTCTTGTACAGAGACTTGATATCAGCGGGAATGTTGGGGATGTCCTGG 715223 Query 105812 ATTGAACCCCCCGCCTTGACCATGA---GATCCTTCATATCCTTGGACCA-AAGACCA-A 105866 || ||||| ||| | | | |||| | | |||||| | | ||||| ||| ||| | Sbjct 715222 ATGGAACCACCCTC---GGCAATGATTCGGTTCTTCATGGCATCAGACCACAAGCCCATA 715166 Query 105867 TCTTCTTGAGATCATTGACGAGATGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTC 105926 || || || || |||| ||| |||||||| | ||||| || || ||| | Sbjct 715165 TCGACT--AGGTCCTTGAGGAGCCAGGGGTTGACAACCTGGAACTCACCAGCCAGGACAC 715108 Query 105927 TTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTG 105986 | | | || ||||| | || ||||| ||||||||||| || || || | ||| || | Sbjct 715107 GGCGCTGGTAAATGTTTGAGGTATAGGGCTCAAAGCATTCGTTGTTGCCTAGGATCTGCG 715048 Query 105987 CGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGA 106046 || ||| || ||||| || || | | | ||||| ||||| || | ||||||| Sbjct 715047 AAGTACTGGCCGTAGGCATGGGGGCGAGGAGCAAGCTGTTGCGAAGGCCATGCTCCTTGA 714988 Query 106047 TGCGTTCCTTGAGAACATCCCAGTCGTA--GTTGAGCTTGGTTTCACCTTCCCACATATC 106104 | || |||| |||||||| | | | || || ||||| |||| |||| || Sbjct 714987 CCTGCTCACGGAGAGTCTCCCAGTCCCAAAGGTCAGAG-GGCTTCACGTTCC-ACATGTC 714930 Query 106105 AAATTGAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGC 106164 ||| ||||| | || | || | |||||| |||| ||| || |||| || || | Sbjct 714929 AAACTGAAGGATGCCCTCAGAAGCGGGAGAGCCCTTAAAGGTGGAGTAGGGGCCCTGCTC 714870 Query 106165 TTCAGCCAATT-CACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAG 106223 | || | | ||| | || ||||| ||||| || ||||| ||||| || | Sbjct 714869 CTTGGCGAGCTGCACGGAG-GCAGTCAGGGCAGCGTGGTAGATGGTCTCAAATATCTGCT 714811 Query 106224 CATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCG 106283 |||| ||| || ||| || || || | ||| | || |||| | Sbjct 714810 TGTTCAGCTCACGAGCCTCAGGGGACTCGAAGGGCATGCGAAGAGCGAGGAAGGCATCGG 714751 Query 106284 CGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCT 106343 | ||||| || ||||| | ||||| |||||||| ||||| || || | ||| || || Sbjct 714750 CAAGACCCTGGACACCAACGCCAATGGGTCTGTGGCGCATGTTG--CTGTTGCG-AGCCT 714694 Query 106344 CAA---CGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTG 106400 ||| |||| || || ||| |||| ||| | || | ||| | || | Sbjct 714693 CAATGACGGGGTAGTGGTTGACGTCGATGATCTTGTTCAAGTTGCGGACAACGACCTGGG 714634 Query 106401 TGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAA 106460 ||| ||| || || || | | || | || | | | |||| || || | Sbjct 714633 TGACTTCGTGCAGCTTCTTGAAGTCGTAGCAGCCCTCGTTGTAGTCGACAAACGAAGGCA 714574 Query 106461 GGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTT 106520 | || | || || | || || ||||| |||||| | |||||| | || | Sbjct 714573 GAGCCAGGGAGGCAAGGTTACAGACAGCGACCTCATCAGGGGCACAGTACTCAATGATCT 714514 Query 106521 CTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGC 106580 | || || | |||||| || || || |||| ||||| ||||| ||||| ||||| Sbjct 714513 CAGTGCAGAGGTTGGAGCTGCGGATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGC 714454 Query 106581 ACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCT 106640 | || |||||||| |||||| |||| | || ||||| || || | || ||| || || | Sbjct 714453 ATGCGTCCTTGTACAGCATGAAGGGGTTGCCGGTCTCAGTTTGAGCCTCGAGGATGGCGT 714394 Query 106641 TCCACA-CATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCT--CC--GC--CTCGTAC 106693 ||||| | || | | || |||| ||| || |||| || || ||||||| Sbjct 714393 ACCACAACTTCTGAGCCTTC----ATGGTCTTG---CGACCCTTGCCAAGCTTCTCGTAC 714341 Query 106694 TTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCT 106753 || ||| | ||| || |||||||| || ||||| || || || || || Sbjct 714340 TTCTCGTATAAGGCCTCGAACTCCTCGCCGTAGCAGTCGGCAAGGCCAGGGCACTCGTTG 714281 Query 106754 GGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATC 106813 || || | |||| ||| | || || |||||||||||||||||| || || || ||| Sbjct 714280 GGGCACATCAGAGTCCAATCGCCGTTCTTCTCAACCCGCTTCATGAAGAGATCAGGGATC 714221 Query 106814 CACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAAC 106873 || |||| | || ||||| | || ||||||| | || ||||| || | Sbjct 714220 CAAAGGGCTAGGAAAAGATCGCGGGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGCAGG 714161 Query 106874 TCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTT 106933 || |||||||| | || |||||||||||| ||||| || |||| |||| || ||| | Sbjct 714160 TCCAGGAACTCGAAGACATCCGCGTGCCAGGGCTCGAGGTAGATGGCGAAAGCACCCGGT 714101 Query 106934 CG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGA 106990 || ||| | || | || || || || ||| ||| || || || ||||| ||| Sbjct 714100 CGCTTGTTGCCACCCTGGTCGACGTATCGAGCAGTGTTGTTGAAGACACGGAGCATGGGA 714041 Query 106991 ATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCA 107050 || | ||| | || ||| || || || ||| ||| | |||| | | | Sbjct 714040 ATGACACCGTTGGAGGTACCGTTGGTACCGGCAATGTAAGAGCCAGTGGCACGGATACGG 713981 Query 107051 TGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTT 107110 || || | || ||||| |||||| ||| ||||| |||||| | | ||||| Sbjct 713980 TGAGCGTTGAGACCGATACCGCCAGCCATCTTGGAGATCATGGCACACGTCTTGAGAGTG 713921 Query 107111 CCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGC 107170 |||||||||| | ||| |||||||| || | | |||||||| |||| ||| Sbjct 713920 TCATAGATACCCTCGATGCTATCCTCCTTCATGTCAACCAGGAAGCAGGAAGACAGCTGG 713861 Query 107171 GGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GG 107228 || || |||||||| ||||| ||||| || | || || | ||| | |||| || Sbjct 713860 GGCTGAGGGGTACCAGCGTTGAAAAGGGTGGGCGAAGCATGGGTAAAC--AGCTTGCTGG 713803 Query 107229 ACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCA 107288 |||| || ||| ||||||| |||| |||||||| || || |||||| | | || Sbjct 713802 ACATGAGGTTGTAGGTCTCCAGGACACGCTCAATGTCATCGCCCCAGATGCCAACAGACA 713743 Query 107289 CACGCATAAACATGTATTGGGGT 107311 ||||||| | ||||| || ||| Sbjct 713742 CACGCATGATCATGTGCTGCGGT 713720 >seq6 Length=1299473 Score = 111 bits (122), Expect = 2e-19 Identities = 313/471 (66%), Gaps = 21/471 (4%) Strand=Plus/Plus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 ||||| || || |||||||| |||||||||||||| ||| | ||| ||||| ||||| Sbjct 1188560 TAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCGAGGGAGATGTTCTCCATG 1188619 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAA-----TGGGTGGC-ACCCCAACTTGTTTGAGG 117099 ||||| || || || ||| || | | | | || | | | || || Sbjct 1188620 AAGTCGAAGGGGTTGGTCGACTTGTAGACCTTCTCGTTGCCGAGAGCGACA------AGA 1188673 Query 117100 AGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGA 117159 |||||||| | || |||||||||||| ||| ||||||||||| |||| || Sbjct 1188674 AGACGATCGGCAACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGAGCAGG 1188733 Query 117160 TTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATG 117219 || || || || || || |||| | ||||| || || || || | | |||| Sbjct 1188734 GCGCAGGGCAGAGCCTCGGTGAGGAACTCCTTCTCGATGGTGACGGCATCAGTGATGATG 1188793 Query 117220 GCGTGGATAGT-TTC--GGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCA 117276 | | ||| | ||| | ||| | | || | || | || || || ||| Sbjct 1188794 TCTTCGATGATCTTCTTGCTAGCACGACCCTTCAGATGAGAGTGGAGCAGG--CA-GGCG 1188850 Query 117277 AACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGC 117336 || || ||| || |||||||| || ||||| || || || |||||| ||||| ||| Sbjct 1188851 AAGTCAGTGTGAAGGCCCTCATCACGAGAAATCAGCTCGTTGGAGAAGGTCAGGCCAGGC 1188910 Query 117337 ATGAGACCCCGCTTCTTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACC 117395 ||||| || |||||||| | ||| | || | ||| || | ||| |||||||||||| Sbjct 1188911 ATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCA-AAGGCACCGCTGAAGAAGATACC 1188969 Query 117396 CTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGT 117446 ||| ||| ||||| |||| ||||||| ||| ||||| |||| | |||| Sbjct 1188970 CTCAACAGCAGCAAAGGCAACCAGGCGCTGGGCAAAGGA-CGAGTCCTTGT 1189019 >seq16 Length=594729 Score = 89.7 bits (98), Expect = 6e-13 Identities = 166/241 (69%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 9426 AAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG 9485 || || |||||||| | ||||| || ||||||||||| ||||| | || | || | Sbjct 133972 AAAAGTTCGCGAACTCGCTTGGCTCCAACACCAACAAAGATCTCATCGAACTC-GCTACC 134030 Query 9486 GAACAT-TGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTT 9544 |||| | || |||||||||| | |||||| || | |||||| || ||||||||||| Sbjct 134031 AGACATGTAGAAGAAGGGGACACCGGCTTCACCAGCGACGGCTCGTGCAAGAAGAGTCTT 134090 Query 9545 ACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCACTTCCAAA 9604 || || || || || |||| ||| ||||| || | |||||| || || Sbjct 134091 TCCAGTTCCAGGAGGGCCAACGAGAAGGACACCCTTGGGCAGCTTGGCACCGAGGTCAGT 134150 Query 9605 GTATCTCTCAGGTTGCTTGAGAAAATCCACAATCTCTTCCAATTCATCTTTGGCGGCGTC 9664 | | | || || | ||||||||| || |||| |||| | || || ||||| |||| Sbjct 134151 GAACTTTTCGGGGTTCTTGAGAAACTCAACAACTTCTTGAAGCTCCTCCTTGGCCTCGTC 134210 Query 9665 A 9665 | Sbjct 134211 A 134211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589956809905720