Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12-
21] 3,253 sequences; 60,403,714 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq1388 201 3e-46
seq19 147 5e-30
seq8 136 9e-27
seq15 120 7e-22
>seq1388
Length=1638
Score = 201 bits (222), Expect = 3e-46
Identities = 170/209 (81%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
||||| |||||||| |||||||| || || |||||||||| || || | || || ||
Sbjct 320 ACAAGATGAAGAGTAGACTCTTTCTGGATGTTGTAATCGGAGAGGGTGCGACCGTCCTCA 379
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
||||||||||| |||||||| || ||||| ||||| |||||||| ||||| ||||| |||
Sbjct 380 AGCTGCTTACCAGCGAAGATGAGACGTTGCTGGTCCGGAGGAATACCTTCCTTGTCCTGA 439
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
||||| ||| || ||||||||||| ||||| ||||||||||||||| | ||||||
Sbjct 440 ATTTTAGTCTTCACATTCTCAATGGTATCCGAGGATTCCACTTCAAGGGTGATCGTCTTA 499
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| |||| |||||| ||||| | ||||||
Sbjct 500 CCAGTCAGAGTTTTCACGAATATTTGCAT 528
Score = 185 bits (204), Expect = 2e-41
Identities = 167/210 (80%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|||||||||||||| |||||||| || || |||||||||| |||||| | || || |||
Sbjct 92 ACAAGGTGAAGAGTAGACTCTTTCTGGATGTTGTAATCGGAAAGAGTGCGACCGTCCTCG 151
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
||||||||||| |||||||| || || || ||||| || || |||||||| || || |||
Sbjct 152 AGCTGCTTACCGGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCTTCCTTATCCTGA 211
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || ||||||||||||||| ||||| || |||||| ||||| |||| ||||||
Sbjct 212 ATCTTAGTCTTGACGTTCTCAATAGTGTCGGAGGATTCCACCTCAAGAGTAATGGTCTTT 271
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATT 195141
|| || | || || ||||| | ||||||
Sbjct 272 CCAGTAAGGGTCTTCACGAAAATCTGCATT 301
Score = 176 bits (194), Expect = 1e-38
Identities = 165/210 (79%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|||||||| || |||||||| || || |||||||| |||| |||||| | || ||||||
Sbjct 1094 ACAAGGTGCAGGGTGGACTCCTTCTGGATATTGTAGTCGGAAAGAGTGCGACCGTCTTCG 1153
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || ||||| || |||||||| ||||| || ||||| ||||| ||||| |||
Sbjct 1154 AGCTGCTTGCCAGCGAAAATGAGTCGTTGCTGGTCCGGGGGAATACCTTCCTTGTCCTGA 1213
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
||||| ||| |||||||| || ||||| || || |||||||| || | ||||||
Sbjct 1214 ATTTTGGTCTTAACGTTCTCGATAGTGTCGGAGGACTCAACTTCAAGAGTGATGGTCTTT 1273
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATT 195141
|| || || || || ||||| | ||||||
Sbjct 1274 CCGGTTAAGGTCTTGACGAAAATCTGCATT 1303
Score = 174 bits (192), Expect = 3e-38
Identities = 164/209 (78%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|||||||| || |||||||| || || || ||||| || | |||||| | || ||||||
Sbjct 1322 ACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCGTCTTCG 1381
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || ||||||||||| ||||| ||||| || ||||| ||||| ||||| ||
Sbjct 1382 AGCTGCTTGCCAGCGAAGATAAGACGTTGCTGGTCCGGGGGAATACCTTCCTTGTCCTGG 1441
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || |||||| ||||| |||||||| ||| |||||||| || |||| |||||
Sbjct 1442 ATCTTGGTCTTGACATTCTCGATGGTGTCGGAAGACTCCACTTCGAGAGTAATAGTCTTG 1501
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
||||| || ||||| || || | |||||
Sbjct 1502 CCTGTTAAGGTTTTAACAAAGATCTGCAT 1530
Score = 149 bits (164), Expect = 1e-30
Identities = 159/210 (76%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| || || | |||||| || || ||||| ||||| || | ||| || | ||||| |||
Sbjct 548 ACGAGATGCAAAGTGGATTCCTTCTGAATGTTGTAGTCAGAAAGGGTGCGGCCATCCTCG 607
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|| ||||| || ||||||||||| ||||| || || || || || ||||| |||||||||
Sbjct 608 AGTTGCTTTCCAGCGAAGATAAGACGTTGCTGATCCGGGGGGATACCTTCCTTGTCTTGA 667
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || ||| |||||||| ||||| || || ||| |||||||| |||| ||||||
Sbjct 668 ATCTTAGTCTTCACGTTCTCGATGGTATCAGAGGATTCGACTTCAAGAGTAATGGTCTTT 727
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATT 195141
|| || | ||| || || || | ||||||
Sbjct 728 CCAGTAAGAGTCTTGACAAAAATCTGCATT 757
>seq19
Length=502728
Score = 147 bits (162), Expect = 5e-30
Identities = 155/204 (76%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
||| |||||| ||| || || || ||||| ||| ||||| | ||||| ||||||||
Sbjct 172597 GTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCATCCTCGAGCTG 172656
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
|||||| || ||||||||||| || ||||| || || ||||| || ||||| || || ||
Sbjct 172657 CTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTT 172716
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
||||||||| || |||||||| ||| ||||| |||||||| | |||||| || ||
Sbjct 172717 GGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGT 172776
Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140
| || || ||||| | |||||
Sbjct 172777 GAGGGTCTTGACGAAGATCTGCAT 172800
>seq8
Length=1068389
Score = 136 bits (150), Expect = 9e-27
Identities = 158/211 (75%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| |||||||| || ||||| || || || ||||||||| || || | ||||| ||
Sbjct 632046 ACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCATCCTCC 631987
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
||||||||||| || ||||||||||| || ||||| || |||||||| || ||||| |||
Sbjct 631986 AGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGA 631927
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGT--CCGAACTTTCCACTTCAAGGGTAACCGTCT 195109
|| || ||| || || || ||||| | | | || || || ||||| || | |||||
Sbjct 631926 ATCTTCGACTTCACATTGTCGATGGTATCGCTGGAC--TCGACCTCAAGAGTGATCGTCT 631869
Query 195110 TTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|||| |||| || || ||||| | |||||
Sbjct 631868 TTCCGGTCAGGGTCTTCACGAAGATCTGCAT 631838
Score = 125 bits (138), Expect = 2e-23
Identities = 140/187 (75%), Gaps = 0/187 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|||||||| ||||||||||| || || || ||||| |||| || || | || || |||
Sbjct 631308 ACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCG 631249
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || |||||||| || || || ||||| || || ||||| || || || ||
Sbjct 631248 AGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTATCCTGG 631189
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || ||| ||||| || || || ||||| || || |||||||| | ||||||
Sbjct 631188 ATCTTCGACTTCACGTTGTCGATAGTATCCGAGGACTCGACCTCAAGGGTGATGGTCTTT 631129
Query 195112 CCTGTCA 195118
|| ||||
Sbjct 631128 CCCGTCA 631122
>seq15
Length=666898
Score = 120 bits (132), Expect = 7e-22
Identities = 134/179 (75%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012
|| || || ||||| |||| ||||| | ||||| || |||||||| || ||||||||
Sbjct 143564 TTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATC 143505
Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072
||||| || ||||| || || ||||| || ||||| || || || |||||| || |||
Sbjct 143504 AGTCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCA 143445
Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131
||||||||||| || || |||||||| | ||||| || || | || || |||||
Sbjct 143444 ATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGAA 143386
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109435357847051
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |