Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12- 21] 3,253 sequences; 60,403,714 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1613 131 1e-24 seq1388 120 2e-21 seq3070 98.7 8e-15 >seq1613 Length=1251 Score = 131 bits (144), Expect = 1e-24 Identities = 358/546 (66%), Gaps = 18/546 (3%) Strand=Plus/Plus Query 549994 TATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGT 550053 ||| || || ||| ||||||| ||||| |||||| || || |||||| ||| | || Sbjct 225 TATCGGCATCGATCTAGGAACTACATACTCTTGTGTGGGCGTCATGCAAAACGGTCAGGT 284 Query 550054 TGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGA 550113 || ||||| |||||||| || || || ||| || || || || || | ||||| | Sbjct 285 CGAGATTATCGCCAATGACCAGGGAAATCGAATCACCCCTTCCTACGTCGCCTTCACTG- 343 Query 550114 AACTGAACA---TTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAA 550170 ||||| | | | |||| || || ||||| | || ||| | || ||| ||| Sbjct 344 --CTGAAGAGCGTCTCATTGGCGACGCCGCAAAGAACCAGGCCGCCATGAACCCTGTCAA 401 Query 550171 TACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGC 550230 || | ||||| | |||||| | || || | | | ||||| | || |||||| Sbjct 402 CACCGTCTTTGACGTCAAACGTCTCATCGGTCGCAAGTACAATGACGCCACCGTTCAGCG 461 Query 550231 AGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCT------TATAT 550284 || | ||||| | |||||| | ||||| | || || || | ||| Sbjct 462 TGACAAGAAGCTTCTTCCTTTCAAGATTGTCAGCCAGGGTGACAAGCCCATGATCTCTAT 521 Query 550285 TGAAGCTACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGT 550344 ||| | ||| | ||| | || ||||| || || || || || ||||||| Sbjct 522 TGACG----TCAAG--GGAGAAGAGAAGACCTTTTCCCCCGAGCAGATCTCCGCTATGGT 575 Query 550345 TTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGT 550404 | || ||||| |||| || | | | |||| ||||||||| | |||| || Sbjct 576 GCTGGGAAAGATGAAGAAAACCGCTGAGGAATATCTTGGAAAAGAAGTTAAGAATGCTGT 635 Query 550405 AATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACG 550464 | ||||| || || || || |||||| | ||||| || || || || || || || Sbjct 636 TGTCACTGTCCCGGCTTACTTCAATGACGCTCAACGCCAGGCGACAAAGGACGCGGGTAC 695 Query 550465 TATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATA 550524 |||||| ||||| ||||| | |||||||||||||| |||||||| ||||| ||||||| Sbjct 696 TATTGCAGGACTCAATGTCATGCGTATTATCAATGAGCCTACTGCCGCTGCTATTGCATA 755 Query 550525 TGGACT 550530 || || Sbjct 756 CGGTCT 761 >seq1388 Length=1638 Score = 120 bits (132), Expect = 2e-21 Identities = 160/220 (73%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 |||||||| ||||||||||| ||| ||||| || |||||||| | || || | Sbjct 311 AGACGGAGCACAAGATGAAGAGTAGACTCTTTCTGGATGTTGTAATCGGAGAGGGTGCGA 370 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 || ||||| || || || || || || || | |||||| || |||||||| ||||| Sbjct 371 CCGTCCTCAAGCTGCTTACCAGCGAAGATGAGACGTTGCTGGTCCGGAGGAATACCTTCC 430 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGT 563435 || || |||||||| || || |||||| ||||| | | || | || ||| || || Sbjct 431 TTGTCCTGAATTTTAGTCTTCACATTCTCAATGGTATCCGAG-GATTCCACTTCAAGGGT 489 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 | || |||||||| |||||||| ||||| ||||||||| Sbjct 490 GATCGTCTTACCAGTCAGAGTTTTCACGAATATTTGCATA 529 Score = 104 bits (114), Expect = 2e-16 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 563260 CGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAA 563319 || ||||| ||||| | || ||| || ||| ||||| |||| || || | | Sbjct 542 CGAAGTACGAGATGCAAAGTGGATTCCTTCTGAATGTTGTAGTCAGAAAGGGTGCGGCCA 601 Query 563320 TCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTA 563379 || || ||||| ||||| || || ||||| | ||||||||| || || || ||||| || Sbjct 602 TCCTCGAGTTGCTTTCCAGCGAAGATAAGACGTTGCTGATCCGGGGGGATACCTTCCTTG 661 Query 563380 TCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAAC 563438 |||||||| || || || ||| || ||||||| | || | | ||| ||||||| Sbjct 662 TCTTGAATCTTAGTCTTCACGTTCTCGATGGTATCAGAG-GATTCGACTTCAAGAGTAAT 720 Query 563439 AGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || ||||||||||| || || ||||| ||||| Sbjct 721 GGTCTTTCCAGTAAGAGTCTTGACAAAAATCTGCAT 756 Score = 87.8 bits (96), Expect = 1e-11 Identities = 156/223 (70%), Gaps = 6/223 (3%) Strand=Plus/Plus Query 563256 GAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313 ||||||||| ||||| || ||||| ||| | ||| || ||||| |||| ||||| Sbjct 1312 GAGACGGAGCACAAGGTGCAGGGTGGACTCCTTCTGG--ATGTTGTAGTCAGAAAGAGTA 1369 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 | ||||| || || || || || || ||||| | |||||| || || ||||| ||| Sbjct 1370 CGGCCGTCTTCGAGCTGCTTGCCAGCGAAGATAAGACGTTGCTGGTCCGGGGGAATACCT 1429 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAG 563432 || || || || || || || || ||| || || || | || | || |||||| Sbjct 1430 TCCTTGTCCTGGATCTTGGTCTTGACATTCTCGATGGTGTCGGAA-GACTCCACTTCGAG 1488 Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 ||||| ||| || || || | |||||||| || || |||||| Sbjct 1489 AGTAATAGTCTTGCCTGTTAAGGTTTTAACAAAGATCTGCATA 1531 >seq3070 Length=537 Score = 98.7 bits (108), Expect = 8e-15 Identities = 157/220 (71%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 |||||||| |||||||| || ||| || || ||| ||||| || | ||||| | Sbjct 242 AGACGGAGCACAAGATGTAGAGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGG 183 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 ||| || ||||| ||||| ||||| || || | |||||||| |||||||||||||| Sbjct 182 TCATCCTCCAGTTGCTTTCCCGCAAAGATGAGGCGCTGCTGATCCGGAGGAATTCCTTCC 123 Query 563377 TTATCTTGAATTTTTTGTTTTAC-TGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAG 563434 || || ||||| || || || | || || |||| | || ||| |||||||| Sbjct 122 TTGTCCTGAATCTTGGTCTTCACATTGCT-GATGCTATCGGATGACTCTAC-TTCGAGAG 65 Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | | ||| || || || || ||||| ||||| || ||||| Sbjct 64 TGATAGTCTTTCCGGTTAGCGTTTTGACGAAGATCTGCAT 25 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029123966688970