Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12-
21] 3,253 sequences; 60,403,714 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq1613 131 1e-24
seq1388 120 2e-21
seq3070 98.7 8e-15
>seq1613
Length=1251
Score = 131 bits (144), Expect = 1e-24
Identities = 358/546 (66%), Gaps = 18/546 (3%)
Strand=Plus/Plus
Query 549994 TATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGT 550053
||| || || ||| ||||||| ||||| |||||| || || |||||| ||| | ||
Sbjct 225 TATCGGCATCGATCTAGGAACTACATACTCTTGTGTGGGCGTCATGCAAAACGGTCAGGT 284
Query 550054 TGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGA 550113
|| ||||| |||||||| || || || ||| || || || || || | ||||| |
Sbjct 285 CGAGATTATCGCCAATGACCAGGGAAATCGAATCACCCCTTCCTACGTCGCCTTCACTG- 343
Query 550114 AACTGAACA---TTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAA 550170
||||| | | | |||| || || ||||| | || ||| | || ||| |||
Sbjct 344 --CTGAAGAGCGTCTCATTGGCGACGCCGCAAAGAACCAGGCCGCCATGAACCCTGTCAA 401
Query 550171 TACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGC 550230
|| | ||||| | |||||| | || || | | | ||||| | || ||||||
Sbjct 402 CACCGTCTTTGACGTCAAACGTCTCATCGGTCGCAAGTACAATGACGCCACCGTTCAGCG 461
Query 550231 AGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCT------TATAT 550284
|| | ||||| | |||||| | ||||| | || || || | |||
Sbjct 462 TGACAAGAAGCTTCTTCCTTTCAAGATTGTCAGCCAGGGTGACAAGCCCATGATCTCTAT 521
Query 550285 TGAAGCTACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGT 550344
||| | ||| | ||| | || ||||| || || || || || |||||||
Sbjct 522 TGACG----TCAAG--GGAGAAGAGAAGACCTTTTCCCCCGAGCAGATCTCCGCTATGGT 575
Query 550345 TTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGT 550404
| || ||||| |||| || | | | |||| ||||||||| | |||| ||
Sbjct 576 GCTGGGAAAGATGAAGAAAACCGCTGAGGAATATCTTGGAAAAGAAGTTAAGAATGCTGT 635
Query 550405 AATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACG 550464
| ||||| || || || || |||||| | ||||| || || || || || || ||
Sbjct 636 TGTCACTGTCCCGGCTTACTTCAATGACGCTCAACGCCAGGCGACAAAGGACGCGGGTAC 695
Query 550465 TATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATA 550524
|||||| ||||| ||||| | |||||||||||||| |||||||| ||||| |||||||
Sbjct 696 TATTGCAGGACTCAATGTCATGCGTATTATCAATGAGCCTACTGCCGCTGCTATTGCATA 755
Query 550525 TGGACT 550530
|| ||
Sbjct 756 CGGTCT 761
>seq1388
Length=1638
Score = 120 bits (132), Expect = 2e-21
Identities = 160/220 (73%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316
|||||||| ||||||||||| ||| ||||| || |||||||| | || || |
Sbjct 311 AGACGGAGCACAAGATGAAGAGTAGACTCTTTCTGGATGTTGTAATCGGAGAGGGTGCGA 370
Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376
|| ||||| || || || || || || || | |||||| || |||||||| |||||
Sbjct 371 CCGTCCTCAAGCTGCTTACCAGCGAAGATGAGACGTTGCTGGTCCGGAGGAATACCTTCC 430
Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGT 563435
|| || |||||||| || || |||||| ||||| | | || | || ||| || ||
Sbjct 431 TTGTCCTGAATTTTAGTCTTCACATTCTCAATGGTATCCGAG-GATTCCACTTCAAGGGT 489
Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475
| || |||||||| |||||||| ||||| |||||||||
Sbjct 490 GATCGTCTTACCAGTCAGAGTTTTCACGAATATTTGCATA 529
Score = 104 bits (114), Expect = 2e-16
Identities = 154/216 (71%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 563260 CGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAA 563319
|| ||||| ||||| | || ||| || ||| ||||| |||| || || | |
Sbjct 542 CGAAGTACGAGATGCAAAGTGGATTCCTTCTGAATGTTGTAGTCAGAAAGGGTGCGGCCA 601
Query 563320 TCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTA 563379
|| || ||||| ||||| || || ||||| | ||||||||| || || || ||||| ||
Sbjct 602 TCCTCGAGTTGCTTTCCAGCGAAGATAAGACGTTGCTGATCCGGGGGGATACCTTCCTTG 661
Query 563380 TCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAAC 563438
|||||||| || || || ||| || ||||||| | || | | ||| |||||||
Sbjct 662 TCTTGAATCTTAGTCTTCACGTTCTCGATGGTATCAGAG-GATTCGACTTCAAGAGTAAT 720
Query 563439 AGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474
|| || ||||||||||| || || ||||| |||||
Sbjct 721 GGTCTTTCCAGTAAGAGTCTTGACAAAAATCTGCAT 756
Score = 87.8 bits (96), Expect = 1e-11
Identities = 156/223 (70%), Gaps = 6/223 (3%)
Strand=Plus/Plus
Query 563256 GAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313
||||||||| ||||| || ||||| ||| | ||| || ||||| |||| |||||
Sbjct 1312 GAGACGGAGCACAAGGTGCAGGGTGGACTCCTTCTGG--ATGTTGTAGTCAGAAAGAGTA 1369
Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373
| ||||| || || || || || || ||||| | |||||| || || ||||| |||
Sbjct 1370 CGGCCGTCTTCGAGCTGCTTGCCAGCGAAGATAAGACGTTGCTGGTCCGGGGGAATACCT 1429
Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAG 563432
|| || || || || || || || ||| || || || | || | || ||||||
Sbjct 1430 TCCTTGTCCTGGATCTTGGTCTTGACATTCTCGATGGTGTCGGAA-GACTCCACTTCGAG 1488
Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475
||||| ||| || || || | |||||||| || || ||||||
Sbjct 1489 AGTAATAGTCTTGCCTGTTAAGGTTTTAACAAAGATCTGCATA 1531
>seq3070
Length=537
Score = 98.7 bits (108), Expect = 8e-15
Identities = 157/220 (71%), Gaps = 4/220 (2%)
Strand=Plus/Minus
Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316
|||||||| |||||||| || ||| || || ||| ||||| || | ||||| |
Sbjct 242 AGACGGAGCACAAGATGTAGAGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGG 183
Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376
||| || ||||| ||||| ||||| || || | |||||||| ||||||||||||||
Sbjct 182 TCATCCTCCAGTTGCTTTCCCGCAAAGATGAGGCGCTGCTGATCCGGAGGAATTCCTTCC 123
Query 563377 TTATCTTGAATTTTTTGTTTTAC-TGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAG 563434
|| || ||||| || || || | || || |||| | || ||| ||||||||
Sbjct 122 TTGTCCTGAATCTTGGTCTTCACATTGCT-GATGCTATCGGATGACTCTAC-TTCGAGAG 65
Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474
| | ||| || || || || ||||| ||||| || |||||
Sbjct 64 TGATAGTCTTTCCGGTTAGCGTTTTGACGAAGATCTGCAT 25
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4029123966688970
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |