Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12-
21] 3,253 sequences; 60,403,714 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq8 107 1e-18
seq1388 98.7 8e-16
seq19 98.7 8e-16
>seq8
Length=1068389
Score = 107 bits (118), Expect = 1e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617
|||| ||||| || |||||| || || ||||| ||||| || ||||| | || ||
Sbjct 631818 ACCAGGTGTAGAGTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTTCGACCATCCTCA 631759
Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677
| |||||| ||||| || || |||||||| ||||||| ||||| |||||||||||| |
Sbjct 631758 AGCTGCTTTCCGGCGAAGATGAGTCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGA 631699
Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737
||||| || || | | | || || | ||||||||| | || || || ||
Sbjct 631698 ATCTTCGACTTGACGTTGTCGATGGTATCAGATGACTCCACCTCGAGGGTGATAGTCTTA 631639
Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || | || || ||||| ||||||||
Sbjct 631638 CCGGTGAGGGTCTTGACAAAGATCTGCAT 631610
>seq1388
Length=1638
Score = 98.7 bits (108), Expect = 8e-16
Identities = 137/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634
|||||| || || |||||||| || ||| | ||| |||| || | |||||||||||| ||
Sbjct 109 CTCTTTCTGGATGTTGTAATCGGAAAGAGTGCGACCGTCCTCGAGCTGCTTACCGGCGAA 168
Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694
|| || ||||| || |||| ||| | ||| ||||| || |||||| || ||
Sbjct 169 GATGAGACGCTGCTGGTCCGGGGGGATGCCTTCCTTATCCTGAATCTTAGTCTTGACGTT 228
Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754
| | || || || | |||||||| | ||||| || ||||| || | || || ||
Sbjct 229 CTCAATAGTGTCGGAGGATTCCACCTCAAGAGTAATGGTCTTTCCAGTAAGGGTCTTCAC 288
Query 48755 AAAAATCTGCAT 48766
|||||||||||
Sbjct 289 GAAAATCTGCAT 300
Score = 91.5 bits (100), Expect = 1e-13
Identities = 144/204 (71%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623
|| || ||| ||| || || |||||||| || || ||| | ||| |||| || | ||||
Sbjct 1100 TGCAGGGTGGACTCCTTCTGGATATTGTAGTCGGAAAGAGTGCGACCGTCTTCGAGCTGC 1159
Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683
|| || || || || ||||| || || |||| ||||| || |||||||| ||| |||
Sbjct 1160 TTGCCAGCGAAAATGAGTCGTTGCTGGTCCGGGGGAATACCTTCCTTGTCCTGAAT-TTT 1218
Query 48684 TGTTTTACAGAACCC-ACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742
|| ||| | | | | || || || | ||| || || | || || || ||||| ||
Sbjct 1219 GGTCTTAACGTTCTCGATAGTGTCGGAGGACTCAACTTCAAGAGTGATGGTCTTTCCGGT 1278
Query 48743 CAAAGTTTTTACAAAAATCTGCAT 48766
|| || || || |||||||||||
Sbjct 1279 TAAGGTCTTGACGAAAATCTGCAT 1302
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
||||| | || |||| ||| | ||| || || || ||||| || ||||| |||||
Sbjct 758 CCGCCGCGAAGACGCAGCACGAGATGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAC 817
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
|| | ||| |||| || | |||||||| || || || || ||||| || |||| |||
Sbjct 818 AGGGTGCGACCGTCCTCAAGTTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGGGGG 877
Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719
| ||| ||||| || |||||| || || | | || || || | ||| ||
Sbjct 878 ATGCCTTCCTTATCCTGAATCTTAGTCTTCACGTTCTCGATAGTGTCGGAGGACTCAACT 937
Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| | || || || ||||| || || || || || |||||||||||
Sbjct 938 TCAAGAGTGATGGTCTTTCCGGTTAAGGTCTTGACGAAAATCTGCAT 984
>seq19
Length=502728
Score = 98.7 bits (108), Expect = 8e-16
Identities = 155/222 (70%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| || | |||||| || || |||||||| || || || ||||| || ||| | ||
Sbjct 172583 AGGCGGAGCACCAAGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGG 172642
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || || | ||||||||| ||||| || |||||||| || |||| ||| | |||||||
Sbjct 172643 CCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGGATGCCCTCC 172702
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| ||||| || || | | | || || | ||||||||| | ||
Sbjct 172703 TTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTG 172762
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770
||||| || ||||| | || || || || ||||||||| ||
Sbjct 172763 ATCGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCATCTTG 172804
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380922497371719
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |