Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12- 21] 3,253 sequences; 60,403,714 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq5 271 1e-67 seq6 156 8e-33 >seq5 Length=1316942 Score = 271 bits (300), Expect = 1e-67 Identities = 843/1280 (66%), Gaps = 51/1280 (4%) Strand=Plus/Minus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGG 221475 ||||||||||||||||||||||||||||| ||| |||||| || ||| | ||||| || Sbjct 714847 GTCAGGGCAGCGTGGTAGATGGTCTCAAATATCTGCTTGTTCAG-CTCACGAGCCTCAGG 714789 Query 221476 AGAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACC 221535 || ||||||||| || || | ||| | ||||| || ||||| || || | || Sbjct 714788 GGACTCGAAGGGCATGCGAAGAGCGAGGAAGGCATCGGCAAGACCCTGGACACCAACGCC 714729 Query 221536 GATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACG 221593 ||||| ||||| | | ||||| | ||| || || ||||| || ||||||| Sbjct 714728 AATGGGTCTGTGGCGCATGTTGCTGTTGCGA--GCCTCAATGACGGGGTAGTGGTTGACG 714671 Query 221594 TCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGA 221653 ||||| | ||||| | ||| | | ||| | || ||| |||||||| Sbjct 714670 TCGATGATCTTGTTCAAGTTGCGGACAACGACCTGGGTGACTTCGTGCAGCTTCT----- 714616 Query 221654 TTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTG 221713 |||| | | || ||| |||| | | || ||||| | || || | | | Sbjct 714615 -TGAAGTCGTA---GCAGCCCTCGTTGTAG---TCGACAAACGAAGGCAGAGCCAGGGAG 714563 Query 221714 GCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGG 221773 || |||||||| || || ||||| || | |||| |||||||| || |||||| Sbjct 714562 GCAAGGTTACAGACAGCGACCTCATCAGGGGCACAGTACTCAATGATCTCAGTGCAGAGG 714503 Query 221774 TTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTG 221833 ||| || |||||| ||||||| || || || |||||| ||| ||||||||| Sbjct 714502 TTGGAGCTGCGGATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCATGCGTCCTTG 714443 Query 221834 TAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCT 221893 || ||||| ||||| ||| ||||| |||||| | || || || ||| | | | Sbjct 714442 TACAGCATGAAGGGGTTGCCGGTCTCAGTTTGAGCCTCGAGGATGGCGTACCACAACT-T 714384 Query 221894 CTG-GCGCTCACCGTCCTCTTGACTGCACCCTCGGT---CTTTTCATAC--CCGGTATAG 221947 ||| || ||| ||| ||| ||||| | ||| || ||| | ||||| Sbjct 714383 CTGAGCCTTCATGGTC---TTGCG---ACCCTTGCCAAGCTTCTCGTACTTCTCGTATAA 714330 Query 221948 AGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATC 222007 || | | |||| || ||||| ||| | ||||| || ||| | ||| |||||| Sbjct 714329 GGCCT--CGAACTCCTCGCCGTAGCAGTCGGCAAGGCCAGGGCACTCGTTGGGGCACATC 714272 Query 222008 AGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCC 222067 ||| |||| | ||| | | |||| || ||||||||| || |||||||| || || Sbjct 714271 AGAGTCCAATCGCCGTTCTTCTCAACCCGCTTCATGAAGAGATCAGGGATCCAAAGGGCT 714212 Query 222068 TGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAAC 222127 | || ||||| | || || ||| ||| ||||| ||| || | ||| |||| ||| Sbjct 714211 AGGAAAAGATCGCGGGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGCAGGTCCAGGAAC 714152 Query 222128 TCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTG 222187 || || | || |||||||| ||||| || |||| ||| | ||| || |||||||||||| Sbjct 714151 TCGAAGACATCCGCGTGCCAGGGCTCGAGGTAGATGGCGAAAGCACCCGGTCGCTTGTTG 714092 Query 222188 CCACCCTGATCCAC-CATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTC 222245 |||||||| || || ||| ||| | |||||||| || || | || | | | Sbjct 714091 CCACCCTGGTCGACGTATC--GAGCAGTGTTGTTGAAGACACGGAGCATGGGAATGACAC 714034 Query 222246 CGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAG 222305 ||||||| ||||||||| || |||||| | || ||| | || ||| | || Sbjct 714033 CGTTGGAGGTACCGTTGGTACCGGCAATGTAAGAGCCAGTGGCAC---GGATACGGTGAG 713977 Query 222306 ACATG---CCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCA 222362 || |||||||| || || || ||||||||||| || ||||||||||||| Sbjct 713976 CGTTGAGACCGATACCGCCAGCCATCTTGGAGATCATGGCACACGTCTTGAGAGTGTCAT 713917 Query 222363 TGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATT 222422 ||| ||||| || |||||||| | || | ||| || || || |||| ||| | | Sbjct 713916 AGATACCCTCGATGCTATCCTCCTTCATGTCAACCAGGAAGCAGGAAGACAGCTGGGGCT 713857 Query 222423 TGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGC-CCCTAGACATC 222481 | || || ||||| || || ||||| || || ||||| ||| || ||||| Sbjct 713856 GAGGGGTACCAGCGTTGAAAAGGGTGGGCGAAGCATGGGTAAA-CAGCTTGCTGGACATG 713798 Query 222482 AGATCGTACGTCTCTACGACTCTGGCGATGTTGTC-CCCGTGAATCTGCATGGCGCATCT 222540 || | ||| ||||| | ||| | | |||| || ||| || | | | || | Sbjct 713797 AGGTTGTAGGTCTCCAGGACACGCTCAATGTCATCGCCCCAGATGCCAACAGACACA-CG 713739 Query 222541 CATGTACATGTACTGGGGCCTCTCCACA--GGACCCTTGGAGCTGGAGAGCAGGTACGAT 222598 |||| ||||| ||| || | ||| ||| || | | || ||| || || ||| Sbjct 713738 CATGATCATGTGCTGCGGTCGCTCAACAATCTTGCCGTCAATCT--TGAGGAGATAAGAT 713681 Query 222599 TTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCG 222658 |||||||||||||| || ||||| | | || ||||| | | | | || | ||| Sbjct 713680 CGCTCCAGAGTCTTGAAACCGAAGTATTGGTAGTTGAAGTCGCGGTCATACACAATCGCG 713621 Query 222659 GCGTCCAGCTCCGACTTGTG 222678 | ||| |||||| |||||| Sbjct 713620 GAGTCGAGCTCCTCCTTGTG 713601 >seq6 Length=1299473 Score = 156 bits (172), Expect = 8e-33 Identities = 351/529 (66%), Gaps = 12/529 (2%) Strand=Plus/Minus Query 25798 ATCGAGCACA-TACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAG 25856 ||||| || | | ||| ||||| | |||||| |||||||| ||||||| | Sbjct 1189078 ATCGACCATAGTTCCCTGCATCCGAAAGAAGGCTGACTGGGCCATCCGGTGGATCCAGGA 1189019 Query 25857 CCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTT 25916 | || | | | |||| | |||| ||||| |||||||||||||| ||||| ||||| || Sbjct 1189018 CAAGGACTCGTCCTTTGCCCAGCGCCTGGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTT 1188959 Query 25917 CAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTA 25976 ||||||| | ||||| ||||||||||||||||| || || |||||| || ||| Sbjct 1188958 CAGCGGTGCCTTTGCTTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGCCTGAC 1188899 Query 25977 CTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCT 26036 ||| ||||||||||| || | || ||||| || |||| || || ||||||||||| Sbjct 1188898 CTTCTCCAACGAGCTGATTTCTCGTGATGAGGGCCTTCACACTGACTTCGCCTGCCTGCT 1188839 Query 26037 CTACACGGGCCACTTGCTCCACAAACCTTCT--CAAG-AGACCGTCTACAGTATCATCAA 26093 | || | || || | | | || |||| ||| | || | ||||||| Sbjct 1188838 CCACTC---TCA---TCTGAAGGGTCGTGCTAGCAAGAAGATCATCGAAGACATCATCAC 1188785 Query 26094 AGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGG 26153 || || || |||||||||||||| | | || Sbjct 1188784 TGATGCCGTCACCATCGAGAAGGAGTTCCTCACCGAGGCTCTGCCCTGCGCCCTGCTCGG 1188725 Query 26154 CATGAACAACAGA-CTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGCC 26212 ||||||| | || ||||||| || |||||||||| || ||||| | ||| || | Sbjct 1188724 CATGAAC-TCTGACCTCATGAAGCAGTACATTGAGTTCGTTGCCGATCGTCTTCTTGTCG 1188666 Query 26213 AGCTGGGACTCGCCAGACTCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATAT 26272 || || || | |||||| || | ||||| |||||||| ||||| ||||| | Sbjct 1188665 CTCTCGGCAACGAGAAGGTCTACAAGTCGACCAACCCCTTCGACTTCATGGAGAACATCT 1188606 Query 26273 CGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 | | | || |||||||||||||| || ||| | ||||| ||||| || Sbjct 1188605 CCCTCGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGACTACCA 1188557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928807030848320