Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12-
21] 3,253 sequences; 60,403,714 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq5 271 1e-67
seq6 156 8e-33
>seq5
Length=1316942
Score = 271 bits (300), Expect = 1e-67
Identities = 843/1280 (66%), Gaps = 51/1280 (4%)
Strand=Plus/Minus
Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGG 221475
||||||||||||||||||||||||||||| ||| |||||| || ||| | ||||| ||
Sbjct 714847 GTCAGGGCAGCGTGGTAGATGGTCTCAAATATCTGCTTGTTCAG-CTCACGAGCCTCAGG 714789
Query 221476 AGAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACC 221535
|| ||||||||| || || | ||| | ||||| || ||||| || || | ||
Sbjct 714788 GGACTCGAAGGGCATGCGAAGAGCGAGGAAGGCATCGGCAAGACCCTGGACACCAACGCC 714729
Query 221536 GATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACG 221593
||||| ||||| | | ||||| | ||| || || ||||| || |||||||
Sbjct 714728 AATGGGTCTGTGGCGCATGTTGCTGTTGCGA--GCCTCAATGACGGGGTAGTGGTTGACG 714671
Query 221594 TCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGA 221653
||||| | ||||| | ||| | | ||| | || ||| ||||||||
Sbjct 714670 TCGATGATCTTGTTCAAGTTGCGGACAACGACCTGGGTGACTTCGTGCAGCTTCT----- 714616
Query 221654 TTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTG 221713
|||| | | || ||| |||| | | || ||||| | || || | | |
Sbjct 714615 -TGAAGTCGTA---GCAGCCCTCGTTGTAG---TCGACAAACGAAGGCAGAGCCAGGGAG 714563
Query 221714 GCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGG 221773
|| |||||||| || || ||||| || | |||| |||||||| || ||||||
Sbjct 714562 GCAAGGTTACAGACAGCGACCTCATCAGGGGCACAGTACTCAATGATCTCAGTGCAGAGG 714503
Query 221774 TTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTG 221833
||| || |||||| ||||||| || || || |||||| ||| |||||||||
Sbjct 714502 TTGGAGCTGCGGATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCATGCGTCCTTG 714443
Query 221834 TAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCT 221893
|| ||||| ||||| ||| ||||| |||||| | || || || ||| | | |
Sbjct 714442 TACAGCATGAAGGGGTTGCCGGTCTCAGTTTGAGCCTCGAGGATGGCGTACCACAACT-T 714384
Query 221894 CTG-GCGCTCACCGTCCTCTTGACTGCACCCTCGGT---CTTTTCATAC--CCGGTATAG 221947
||| || ||| ||| ||| ||||| | ||| || ||| | |||||
Sbjct 714383 CTGAGCCTTCATGGTC---TTGCG---ACCCTTGCCAAGCTTCTCGTACTTCTCGTATAA 714330
Query 221948 AGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATC 222007
|| | | |||| || ||||| ||| | ||||| || ||| | ||| ||||||
Sbjct 714329 GGCCT--CGAACTCCTCGCCGTAGCAGTCGGCAAGGCCAGGGCACTCGTTGGGGCACATC 714272
Query 222008 AGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCC 222067
||| |||| | ||| | | |||| || ||||||||| || |||||||| || ||
Sbjct 714271 AGAGTCCAATCGCCGTTCTTCTCAACCCGCTTCATGAAGAGATCAGGGATCCAAAGGGCT 714212
Query 222068 TGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAAC 222127
| || ||||| | || || ||| ||| ||||| ||| || | ||| |||| |||
Sbjct 714211 AGGAAAAGATCGCGGGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGCAGGTCCAGGAAC 714152
Query 222128 TCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTG 222187
|| || | || |||||||| ||||| || |||| ||| | ||| || ||||||||||||
Sbjct 714151 TCGAAGACATCCGCGTGCCAGGGCTCGAGGTAGATGGCGAAAGCACCCGGTCGCTTGTTG 714092
Query 222188 CCACCCTGATCCAC-CATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTC 222245
|||||||| || || ||| ||| | |||||||| || || | || | | |
Sbjct 714091 CCACCCTGGTCGACGTATC--GAGCAGTGTTGTTGAAGACACGGAGCATGGGAATGACAC 714034
Query 222246 CGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAG 222305
||||||| ||||||||| || |||||| | || ||| | || ||| | ||
Sbjct 714033 CGTTGGAGGTACCGTTGGTACCGGCAATGTAAGAGCCAGTGGCAC---GGATACGGTGAG 713977
Query 222306 ACATG---CCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCA 222362
|| |||||||| || || || ||||||||||| || |||||||||||||
Sbjct 713976 CGTTGAGACCGATACCGCCAGCCATCTTGGAGATCATGGCACACGTCTTGAGAGTGTCAT 713917
Query 222363 TGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATT 222422
||| ||||| || |||||||| | || | ||| || || || |||| ||| | |
Sbjct 713916 AGATACCCTCGATGCTATCCTCCTTCATGTCAACCAGGAAGCAGGAAGACAGCTGGGGCT 713857
Query 222423 TGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGC-CCCTAGACATC 222481
| || || ||||| || || ||||| || || ||||| ||| || |||||
Sbjct 713856 GAGGGGTACCAGCGTTGAAAAGGGTGGGCGAAGCATGGGTAAA-CAGCTTGCTGGACATG 713798
Query 222482 AGATCGTACGTCTCTACGACTCTGGCGATGTTGTC-CCCGTGAATCTGCATGGCGCATCT 222540
|| | ||| ||||| | ||| | | |||| || ||| || | | | || |
Sbjct 713797 AGGTTGTAGGTCTCCAGGACACGCTCAATGTCATCGCCCCAGATGCCAACAGACACA-CG 713739
Query 222541 CATGTACATGTACTGGGGCCTCTCCACA--GGACCCTTGGAGCTGGAGAGCAGGTACGAT 222598
|||| ||||| ||| || | ||| ||| || | | || ||| || || |||
Sbjct 713738 CATGATCATGTGCTGCGGTCGCTCAACAATCTTGCCGTCAATCT--TGAGGAGATAAGAT 713681
Query 222599 TTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCG 222658
|||||||||||||| || ||||| | | || ||||| | | | | || | |||
Sbjct 713680 CGCTCCAGAGTCTTGAAACCGAAGTATTGGTAGTTGAAGTCGCGGTCATACACAATCGCG 713621
Query 222659 GCGTCCAGCTCCGACTTGTG 222678
| ||| |||||| ||||||
Sbjct 713620 GAGTCGAGCTCCTCCTTGTG 713601
>seq6
Length=1299473
Score = 156 bits (172), Expect = 8e-33
Identities = 351/529 (66%), Gaps = 12/529 (2%)
Strand=Plus/Minus
Query 25798 ATCGAGCACA-TACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAG 25856
||||| || | | ||| ||||| | |||||| |||||||| ||||||| |
Sbjct 1189078 ATCGACCATAGTTCCCTGCATCCGAAAGAAGGCTGACTGGGCCATCCGGTGGATCCAGGA 1189019
Query 25857 CCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTT 25916
| || | | | |||| | |||| ||||| |||||||||||||| ||||| ||||| ||
Sbjct 1189018 CAAGGACTCGTCCTTTGCCCAGCGCCTGGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTT 1188959
Query 25917 CAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTA 25976
||||||| | ||||| ||||||||||||||||| || || |||||| || |||
Sbjct 1188958 CAGCGGTGCCTTTGCTTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGCCTGAC 1188899
Query 25977 CTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCT 26036
||| ||||||||||| || | || ||||| || |||| || || |||||||||||
Sbjct 1188898 CTTCTCCAACGAGCTGATTTCTCGTGATGAGGGCCTTCACACTGACTTCGCCTGCCTGCT 1188839
Query 26037 CTACACGGGCCACTTGCTCCACAAACCTTCT--CAAG-AGACCGTCTACAGTATCATCAA 26093
| || | || || | | | || |||| ||| | || | |||||||
Sbjct 1188838 CCACTC---TCA---TCTGAAGGGTCGTGCTAGCAAGAAGATCATCGAAGACATCATCAC 1188785
Query 26094 AGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGG 26153
|| || || |||||||||||||| | | ||
Sbjct 1188784 TGATGCCGTCACCATCGAGAAGGAGTTCCTCACCGAGGCTCTGCCCTGCGCCCTGCTCGG 1188725
Query 26154 CATGAACAACAGA-CTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGCC 26212
||||||| | || ||||||| || |||||||||| || ||||| | ||| || |
Sbjct 1188724 CATGAAC-TCTGACCTCATGAAGCAGTACATTGAGTTCGTTGCCGATCGTCTTCTTGTCG 1188666
Query 26213 AGCTGGGACTCGCCAGACTCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATAT 26272
|| || || | |||||| || | ||||| |||||||| ||||| ||||| |
Sbjct 1188665 CTCTCGGCAACGAGAAGGTCTACAAGTCGACCAACCCCTTCGACTTCATGGAGAACATCT 1188606
Query 26273 CGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321
| | | || |||||||||||||| || ||| | ||||| ||||| ||
Sbjct 1188605 CCCTCGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGACTACCA 1188557
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928807030848320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |