Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12- 21] 3,253 sequences; 60,403,714 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq1388 123 2e-22 seq3070 114 8e-20 seq8 102 5e-16 >seq1388 Length=1638 Score = 123 bits (136), Expect = 2e-22 Identities = 161/220 (73%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| ||||||||||| ||| ||||| | || ||||| | || || Sbjct 307 ACGTAGACGGAGCACAAGATGAAGAGTAGACTCTTTCTGGATGTTGTAATCGGAGAGGGT 366 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | || ||||| ||||| ||||| || || |||||||| || || |||||||| || Sbjct 367 GCGACCGTCCTCAAGCTGCTTACCAGCGAAGATGAGACGTTGCTGGTCCGGAGGAATACC 426 Query 480671 TTCCTTGTCTTGAATCTTTTGT-TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAA 480729 ||||||||| ||||| ||| || || ||| ||||| ||||| | | | ||||| Sbjct 427 TTCCTTGTCCTGAAT-TTTAGTCTTCACATTCTCAATGGTATCCGAGGATTCCACTTCAA 485 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||| || || ||||| || ||||| || ||||| ||||| Sbjct 486 GGGTGATCGTCTTACCAGTCAGAGTTTTCACGAATATTTG 525 Score = 114 bits (126), Expect = 8e-20 Identities = 155/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 480558 CGGAGTACAAGATG--AAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGT 480615 || ||||| ||||| ||||| | ||| || || || || |||| || || | | Sbjct 542 CGAAGTACGAGATGCAAAGTGGA--TTCCTTCTGAATGTTGTAGTCAGAAAGGGTGCGGC 599 Query 480616 TATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCT 480675 ||| || |||||||||||||| || ||||||||||| ||||| || || || ||||||| Sbjct 600 CATCCTCGAGTTGCTTTCCAGCGAAGATAAGACGTTGCTGATCCGGGGGGATACCTTCCT 659 Query 480676 TGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAA 480735 ||||||||||||| || || || || ||||||| | | |||||| |||| Sbjct 660 TGTCTTGAATCTTAGTCTTCACGTTCTCGATGGTATCAGAGGATTCGACTTCAAGAGTAA 719 Query 480736 TAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || || || |||||||| || ||||| || Sbjct 720 TGGTCTTTCCAGTAAGAGTCTTGACAAAAATCTG 753 Score = 87.8 bits (96), Expect = 1e-11 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 |||||||| || || |||||||| ||| ||| || | || || |||| || || Sbjct 764 CGAAGACGCAGCACGAGATGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGACAGGGTG 823 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | || ||||||||||| ||||| || || ||||| || || || || || || ||| Sbjct 824 CGACCGTCCTCAAGTTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCT 883 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGG 480731 ||||| || |||||||| || || || ||||| || | | | |||||| Sbjct 884 TCCTTATCCTGAATCTTAGTCTTCACGTTCTCGATAGTGTCGGAGGACTCAACTTCAAGA 943 Query 480732 GTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || ||||| | ||||| |||||||| || Sbjct 944 GTGATGGTCTTTCCGGTTAAGGTCTTGACGAAAATCTG 981 Score = 86.0 bits (94), Expect = 4e-11 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 || |||||||| ||||| || || || || || | ||| || || | ||||| Sbjct 1082 CGGAGACGGAGCACAAGGTGCAGGGTGGACTCCTTCTGGATATTGTAGTCGGAAAGAGTG 1141 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | ||||| || ||||| ||||| ||||| || ||||| || || || ||||| ||| Sbjct 1142 CGACCGTCTTCGAGCTGCTTGCCAGCGAAAATGAGTCGTTGCTGGTCCGGGGGAATACCT 1201 Query 480672 TCCTTGTCTTGAATCTTTTGT-TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 |||||||| ||||| ||| || || || || ||||| || | | | |||||| Sbjct 1202 TCCTTGTCCTGAAT-TTTGGTCTTAACGTTCTCGATAGTGTCGGAGGACTCAACTTCAAG 1260 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || ||||| | ||||| |||||||| || Sbjct 1261 AGTGATGGTCTTTCCGGTTAAGGTCTTGACGAAAATCTG 1299 >seq3070 Length=537 Score = 114 bits (126), Expect = 8e-20 Identities = 108/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||||||||| |||||||| || ||| || || || || || || | ||||| Sbjct 246 ACGAAGACGGAGCACAAGATGTAGAGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGT 187 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | || ||| || ||||||||||| ||||| || || || || ||||| ||||||||||| Sbjct 186 GCGGTCATCCTCCAGTTGCTTTCCCGCAAAGATGAGGCGCTGCTGATCCGGAGGAATTCC 127 Query 480671 TTCCTTGTCTTGAATCTT 480688 ||||||||| |||||||| Sbjct 126 TTCCTTGTCCTGAATCTT 109 >seq8 Length=1068389 Score = 102 bits (112), Expect = 5e-16 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||| ||||| || || || || ||| ||||| | || || |||| || || Sbjct 631831 ACGAAGTCGGAGAACCAGGTGTAGAGTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGT 631772 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 || ||| ||||| |||||||| || || || || || || ||||| || ||||| || Sbjct 631771 TCGACCATCCTCAAGCTGCTTTCCGGCGAAGATGAGTCGCTGCTGATCCGGGGGAATGCC 631712 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 |||||||| |||||||| ||||| || || ||||||| || | | | | | Sbjct 631711 CTCCTTGTCCTGAATCTTCGACTTGACGTTGTCGATGGTATCAGATGACTCCACCT-CGA 631653 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||| ||||| ||||||||||| ||||| || || || || Sbjct 631652 GGGTGATAGTCTTACCGGTGAGGGTCTTGACAAAGATCTG 631613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268039663046444