Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12-
21] 3,253 sequences; 60,403,714 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq1388 123 2e-22
seq3070 114 8e-20
seq8 102 5e-16
>seq1388
Length=1638
Score = 123 bits (136), Expect = 2e-22
Identities = 161/220 (73%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
||| |||||||| ||||||||||| ||| ||||| | || ||||| | || ||
Sbjct 307 ACGTAGACGGAGCACAAGATGAAGAGTAGACTCTTTCTGGATGTTGTAATCGGAGAGGGT 366
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
| || ||||| ||||| ||||| || || |||||||| || || |||||||| ||
Sbjct 367 GCGACCGTCCTCAAGCTGCTTACCAGCGAAGATGAGACGTTGCTGGTCCGGAGGAATACC 426
Query 480671 TTCCTTGTCTTGAATCTTTTGT-TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAA 480729
||||||||| ||||| ||| || || ||| ||||| ||||| | | | |||||
Sbjct 427 TTCCTTGTCCTGAAT-TTTAGTCTTCACATTCTCAATGGTATCCGAGGATTCCACTTCAA 485
Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|||| || || ||||| || ||||| || ||||| |||||
Sbjct 486 GGGTGATCGTCTTACCAGTCAGAGTTTTCACGAATATTTG 525
Score = 114 bits (126), Expect = 8e-20
Identities = 155/214 (72%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 480558 CGGAGTACAAGATG--AAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGT 480615
|| ||||| ||||| ||||| | ||| || || || || |||| || || | |
Sbjct 542 CGAAGTACGAGATGCAAAGTGGA--TTCCTTCTGAATGTTGTAGTCAGAAAGGGTGCGGC 599
Query 480616 TATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCT 480675
||| || |||||||||||||| || ||||||||||| ||||| || || || |||||||
Sbjct 600 CATCCTCGAGTTGCTTTCCAGCGAAGATAAGACGTTGCTGATCCGGGGGGATACCTTCCT 659
Query 480676 TGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAA 480735
||||||||||||| || || || || ||||||| | | |||||| ||||
Sbjct 660 TGTCTTGAATCTTAGTCTTCACGTTCTCGATGGTATCAGAGGATTCGACTTCAAGAGTAA 719
Query 480736 TAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
| || || || || |||||||| || ||||| ||
Sbjct 720 TGGTCTTTCCAGTAAGAGTCTTGACAAAAATCTG 753
Score = 87.8 bits (96), Expect = 1e-11
Identities = 150/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611
|||||||| || || |||||||| ||| ||| || | || || |||| || ||
Sbjct 764 CGAAGACGCAGCACGAGATGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGACAGGGTG 823
Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671
| || ||||||||||| ||||| || || ||||| || || || || || || |||
Sbjct 824 CGACCGTCCTCAAGTTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCT 883
Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGG 480731
||||| || |||||||| || || || ||||| || | | | ||||||
Sbjct 884 TCCTTATCCTGAATCTTAGTCTTCACGTTCTCGATAGTGTCGGAGGACTCAACTTCAAGA 943
Query 480732 GTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|| || || || ||||| | ||||| |||||||| ||
Sbjct 944 GTGATGGTCTTTCCGGTTAAGGTCTTGACGAAAATCTG 981
Score = 86.0 bits (94), Expect = 4e-11
Identities = 152/219 (69%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611
|| |||||||| ||||| || || || || || | ||| || || | |||||
Sbjct 1082 CGGAGACGGAGCACAAGGTGCAGGGTGGACTCCTTCTGGATATTGTAGTCGGAAAGAGTG 1141
Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671
| ||||| || ||||| ||||| ||||| || ||||| || || || ||||| |||
Sbjct 1142 CGACCGTCTTCGAGCTGCTTGCCAGCGAAAATGAGTCGTTGCTGGTCCGGGGGAATACCT 1201
Query 480672 TCCTTGTCTTGAATCTTTTGT-TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730
|||||||| ||||| ||| || || || || ||||| || | | | ||||||
Sbjct 1202 TCCTTGTCCTGAAT-TTTGGTCTTAACGTTCTCGATAGTGTCGGAGGACTCAACTTCAAG 1260
Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|| || || || ||||| | ||||| |||||||| ||
Sbjct 1261 AGTGATGGTCTTTCCGGTTAAGGTCTTGACGAAAATCTG 1299
>seq3070
Length=537
Score = 114 bits (126), Expect = 8e-20
Identities = 108/138 (78%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
|||||||||||| |||||||| || ||| || || || || || || | |||||
Sbjct 246 ACGAAGACGGAGCACAAGATGTAGAGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGT 187
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
| || ||| || ||||||||||| ||||| || || || || ||||| |||||||||||
Sbjct 186 GCGGTCATCCTCCAGTTGCTTTCCCGCAAAGATGAGGCGCTGCTGATCCGGAGGAATTCC 127
Query 480671 TTCCTTGTCTTGAATCTT 480688
||||||||| ||||||||
Sbjct 126 TTCCTTGTCCTGAATCTT 109
>seq8
Length=1068389
Score = 102 bits (112), Expect = 5e-16
Identities = 156/220 (71%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
|||||| ||||| || || || || ||| ||||| | || || |||| || ||
Sbjct 631831 ACGAAGTCGGAGAACCAGGTGTAGAGTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGT 631772
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
|| ||| ||||| |||||||| || || || || || || ||||| || ||||| ||
Sbjct 631771 TCGACCATCCTCAAGCTGCTTTCCGGCGAAGATGAGTCGCTGCTGATCCGGGGGAATGCC 631712
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729
|||||||| |||||||| ||||| || || ||||||| || | | | | |
Sbjct 631711 CTCCTTGTCCTGAATCTTCGACTTGACGTTGTCGATGGTATCAGATGACTCCACCT-CGA 631653
Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|||| ||||| ||||||||||| ||||| || || || ||
Sbjct 631652 GGGTGATAGTCTTACCGGTGAGGGTCTTGACAAAGATCTG 631613
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3268039663046444
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |