Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12- 21] 3,253 sequences; 60,403,714 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq5 212 7e-50 seq6 111 2e-19 seq16 107 2e-18 >seq5 Length=1316942 Score = 212 bits (234), Expect = 7e-50 Identities = 1044/1637 (64%), Gaps = 45/1637 (3%) Strand=Plus/Plus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| ||||| ||||||| || | | |||||| || || |||||||| |||| Sbjct 713721 CCGCAGCACATGATCATGCGTGTGTCTGTTGGCATCTGGGGCGATGACATTGAGCGTGTC 713780 Query 75272 TTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTCT 75329 ||||||| ||| || |||||| |||| | ||| | || || | || ||||| | Sbjct 713781 CTGGAGACCTACAACCTCATGTCCAGCAAGCT--GTTTACCCATGCTTCGCCCACCCTTT 713838 Query 75330 TCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 75389 |||| |||||||| || || ||| |||| |||||||| | | || ||||||| Sbjct 713839 TCAACGCTGGTACCCCTCAGCCCCAGCTGTCTTCCTGCTTCCTGGTTGACATGAAGGAGG 713898 Query 75390 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 75449 | ||| | |||||||||| ||||| | | |||||| ||||| ||| ||||| Sbjct 713899 ATAGCATCGAGGGTATCTATGACACTCTCAAGACGTGTGCCATGATCTCCAAGATGGCTG 713958 Query 75450 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAA 75509 | ||||| || | || || | | | |||| | ||| ||| || || | Sbjct 713959 GCGGTATCGGTCTCAACGCTCACCGTATCCGTGCCACTGGCTCTTACATTGCCGGTACCA 714018 Query 75510 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 75569 | ||| || | ||| | ||||| ||||| || || || ||| ||| || || || | Sbjct 714019 ACGGTACCTCCAACGGTGTCATTCCCATGCTCCGTGTCTTCAACAACACTGCTCGATACG 714078 Query 75570 TAAATCAAGCGGGGCGTC--GCAAG-GGGTCCAT-CGCGGTCTACTTGGAACCATGGCAT 75625 | | || | | ||| | || | |||| | | ||| ||||| | || || ||||| Sbjct 714079 TCGACCAGG-GTGGCAACAAGCGACCGGGTGCTTTCGCCATCTACCTCGAGCCCTGGCAC 714137 Query 75626 GCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGT 75685 || ||| || | |||||||| || | || ||||| || | ||||||| || Sbjct 714138 GCGGATGTCTTCGAGTTCCTGGACCTGCGCAAGAACCACGGCAAGGAAGAGGTCCGCGCC 714197 Query 75686 AGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGT 75745 | ||||| || | |||| ||||| || || || |||||||||||||||||| || Sbjct 714198 CGCGATCTTTTCCTAGCCCTTTGGATCCCTGATCTCTTCATGAAGCGGGTTGAGAAGAAC 714257 Query 75746 GGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGTGAG 75805 || | ||| |||| | || || || || || || || ||||| || ||| Sbjct 714258 GGCGATTGGACTCTGATGTGCCCCAACGAGTGCCCTGGCCTTGCCGACTGCTACGGCGAG 714317 Query 75806 GAGTTTGAAGCCCTCTACACAAAGTATGAAGAGG------AGGGTAGAGCCAATGCGACT 75859 ||||| || ||| | ||| ||||| || || ||||| | ||| | | | Sbjct 714318 GAGTTCGAGGCCTTATACGAGAAGTACGAGAAGCTTGGCAAGGGTCG---CAAGACCA-T 714373 Query 75860 GTACCAGCCGCCGATGTT-TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACC 75918 | | | | | || ||| ||| | || || ||| | | || || ||||| || | || Sbjct 714374 GAA---GGCTCAGAAGTTGTGGTACGCCATCCTCGAGGCTCAAACTGAGACCGGCAACCC 714430 Query 75919 ATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAAT 75978 | ||||| |||||||| || || ||| ||||| ||||| ||||| |||| || || Sbjct 714431 CTTCATGCTGTACAAGGACGCATGCAACCGCAAGAGCAACCAGAAGAACCTGGGCACCAT 714490 Query 75979 CAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGT 76038 | ||||| || || ||||| || || | |||||| | |||||| ||||| Sbjct 714491 CCGCAGCTCCAACCTCTGCACTGAGATCATTGAGTACTGTGCCCCTGATGAGGTCGCTGT 714550 Query 76039 TTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGA 76098 || || | || || | || || || || |||| | | | || | || Sbjct 714551 CTGTAACCTTGCCTCCCTGGCTCTGCCTTCGTTTGTCGACTACAACGAGGGCTGCTACGA 714610 Query 76099 TTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGA 76158 | | || || || ||| |||| || | ||| | || | ||| |||| || Sbjct 714611 CTTCAAGAAGCTGCACGAAGTCACCCAGGTCGTTGTCCGCAACTTGAACAAGATCATCGA 714670 Query 76159 CAGAAATTTTTATCCCGT---TGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTAT 76215 | || || ||||| |||| || ||| | || || ||||| |||||||| || Sbjct 714671 CGTCAACCACTACCCCGTCATTGAGGCT-CGCAACAGC--AACATGCGCCACAGACCCAT 714727 Query 76216 TGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCATTTGATTC 76275 ||| | ||||| || ||||| || |||| || | ||| | || || || Sbjct 714728 TGGCGTTGGTGTCCAGGGTCTTGCCGATGCCTTCCTCGCTCTTCGCATGCCCTTCGAGTC 714787 Query 76276 AGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGGA 76335 ||| || ||| |||| | || ||||| ||||| || ||||| ||||| Sbjct 714788 CCCTGAGGCTCGTGAGCTGAACAAGCAGATATTTGAGACCATCTACCACGCTGCCCTGAC 714847 Query 76336 GGCGAGTTGTGAAT-TGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCG 76394 || ||| | | || | | || || |||| || ||| |||| ||||||| Sbjct 714848 TGCCTCC-GTGCAGCTCGCCAAGGAGCAGGGCCCCTACTCCACCTTTAAGGGCTCTCCCG 714906 Query 76395 CGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCTCAACTACG--A 76452 | || | || | ||||||||||| |||||| || ||||| || || | || | | Sbjct 714907 CTTCTGAGGGCATCCTTCAGTTTGACATGTGG-AACGTGAAGCCCT-CTGACCTTTGGGA 714964 Query 76453 CTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGC 76512 |||||| |||| || | |||||||| | || ||||| ||||| | | | || Sbjct 714965 CTGGGAGACTCTCCGTGAGCAGGTCAAGGAGCATGGCCTTCGCAACAGCTTGCTCCTCGC 715024 Query 76513 ACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATA 76572 || ||||| || ||| || | || ||| | || || || ||||||||||| || || Sbjct 715025 CCCCATGCCTACGGCCAGTACTTCGCAGATCCTAGGCAACAACGAATGCTTTGAGCCCTA 715084 Query 76573 CACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAACAAGCA 76632 || ||||||| |||| | | | ||| || |||||||| |||||||| Sbjct 715085 TACCTCAAACATTTACCAGCGCCGTGTCCTGGCTGGTGAGTTCCAGGTTGTCAACCCCTG 715144 Query 76633 CCTCGTCAATGACCTCAAGAAGAT-TGGTC-TCTGGTCCAAGGATATGAAGGATCTCATG 76690 ||| |||| ||||| || ||| ||| | | ||||| | | |||||| | | || Sbjct 715145 GCTCCTCAAGGACCT--AGTCGATATGGGCTTGTGGTCTGATGCCATGAAGAACCGAATC 715202 Query 76691 GTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGATGATATCAAGAATCTC 76750 | | |||||||||||| || | ||| | | || || | |||||||||| ||| Sbjct 715203 ATTGCCGAGGGTGGTTCCATCCAGGACATCCCCAACATTCCCGCTGATATCAAGTCTCTG 715262 Query 76751 TACCGCACAGTGTGGGAAAT---CAAGATGAAAGATGTCATTGACATGGCCGCAGATCGT 76807 ||| || |||||||| || | || || ||||| | ||| | || || || Sbjct 715263 TACAAGACTGTGTGGGAGATTTCCCAGCGTCAA---GTCATCCAGATGTCTGCCGACCGA 715319 Query 76808 GGTCGCTTCATTGATCA 76824 ||| |||||||||||| Sbjct 715320 GGTGCCTTCATTGATCA 715336 >seq6 Length=1299473 Score = 111 bits (122), Expect = 2e-19 Identities = 313/471 (66%), Gaps = 21/471 (4%) Strand=Plus/Minus Query 65056 ACAAAGTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTC 65115 |||| | |||| ||||| ||| ||||||| |||| ||||| ||| |||||||||||| Sbjct 1189019 ACAAGGACTCG-TCCTTTGCCCAGCGCCTGGTTGCCTTTGCTGCTGTTGAGGGTATCTTC 1188961 Query 65116 TTCTCCGGGTCATTCTGC-GCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCT 65174 ||| ||| | || ||| | || | ||| | |||||||| || |||||||| ||||| Sbjct 1188960 TTCAGCGGTGCCTT-TGCTTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGCCT 1188902 Query 65175 ATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGA 65234 |||||| || || || ||||| || |||||||| || ||| || || ||| || Sbjct 1188901 GACCTTCTCCAACGAGCTGATTTCTCGTGATGAGGGCCTTCACACTGACTTCGCC-TG-- 1188845 Query 65235 GCTCTTCAAGACTTTGCGTAATAGACCCACTACC--GAA-ACTATCCACGCCATCGTGAA 65291 || || | || | || | | ||| | ||| | ||| | | |||| | | Sbjct 1188844 CCTGCTCCACTCTCATCTGAAGGGTCGTGCTAGCAAGAAGATCATCGAAGACATCATCAC 1188785 Query 65292 AGAGGCGGTTGAGATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGG 65351 || || || || ||||| | |||| || || || || || || || |||| Sbjct 1188784 TGATGCCGTCACCATCGAGAAGGAGTTCCTCACCGAGGCTCTGCCCTGCGCCCTGCTCGG 1188725 Query 65352 TATGAACTCTGAGAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACA 65411 ||||||||||| ||| |||||||||||| || | |||||||| || Sbjct 1188724 CATGAACTCTGACCTCATGAAGCAGTACATTGAGTTCGTTGCCGATCGTCTTCT------ 1188671 Query 65412 AGTTGGGGT-GCCACCCA-----TTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAA 65465 || | | | || | | | | || ||| || || || ||||| ||||| || Sbjct 1188670 TGTCGCTCTCGGCAACGAGAAGGTCTACAAGTCGACCAACCCCTTCGACTTCATGGAGAA 1188611 Query 65466 CATTAGCCTTGATGGGAAGACCAACTTCTTTGAGAAGCGAGTTGGGGACTA 65516 ||| ||| | ||| |||||||||||||| |||||||| || || ||||| Sbjct 1188610 CATCTCCCTCGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGACTA 1188560 >seq16 Length=594729 Score = 107 bits (118), Expect = 2e-18 Identities = 349/537 (65%), Gaps = 19/537 (4%) Strand=Plus/Minus Query 175186 TTCAGTGATGTTGAGGGGATTGACGCCGCCAAAGATGAACTTGAAGAGATTGTGGATTTT 175245 |||| |||||| | || ||||| ||||| || || ||| |||| |||| || ||| Sbjct 134231 TTCAATGATGTCCACGGTTGTGACGAGGCCAAGGAGGAGCTTCAAGAAGTTGTTGAGTTT 134172 Query 175246 CTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGCGCCCTTCTC 175305 |||||| | ||||| | | || ||||||||| | ||| || | ||||||| Sbjct 134171 CTCAAGAACCCCGAAAAGTTCACTGACCTCGGTGCCAAGCTGCCCAAGGGTGTCCTTCTC 134112 Query 175306 GCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAAT 175365 | || || || || |||||||| || || || |||||| |||| |||||| | | Sbjct 134111 GTTGGCCCTCCTGGAACTGGAAAGACTCTTCTTGCACGAGCCGTCGCTGGTGAAGCCGGT 134052 Query 175366 GTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCC 175425 ||||| ||| || | |||| | || | ||||| ||||||||||| || ||| Sbjct 134051 GTCCCCTTCTTCTACATGTCTGGTAGCGAGTTCGATGAGATCTTTGTTGGTGTTGGAGCC 133992 Query 175426 AAAAGGGTTCGCGATCTCTTTGAAATCGCC-CGCGAAAATCAACCATGTATTGTCTTCAT 175484 || | |||||||| || || | ||| | ||| || || ||||| ||||| Sbjct 133991 AAGCGAGTTCGCGAACTTTTCGCCGCAGCCAAGTCAAAGTC-TCCGGCGATTGTGTTCAT 133933 Query 175485 TGATGAGATTGATGC----GGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAATG 175540 || || | ||||| ||| |||||| |||| | || | | | | ||| ||| Sbjct 133932 CGACGAACTCGATGCTATTGGT-GGCAAG---CGCAACCCTAGAGAT---CAAGCCCATG 133880 Query 175541 ACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGA 175600 | || |||||| | || ||||| |||||||| | ||||| || || | |||| Sbjct 133879 CCAAG------CAAACACTCAACCAACTGCTCACCGAACTCGATGGATTCGATCAAGAGA 133826 Query 175601 CTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCCTTC 175660 | ||| | | |||| ||||| || | | || ||||| | || ||| ||| Sbjct 133825 CCAAGATTATCATCATTGGAGCCACCAACCTTCCCAAGATGCTTGACAAGGCACTCATTC 133766 Query 175661 GCCCGGGTCGTTTTGATCGCAAGATCCAAGTGGGTCTTCCAAGTGTGCGAGGTCGCA 175717 | || || || || || ||| | || | |||| ||| || ||| || || |||| Sbjct 133765 GACCCGGACGCTTCGACCGCCATGTCAATGTGGATCTACCCGATGTTCGTGGCCGCA 133709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596545341988640