Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12-
21] 3,253 sequences; 60,403,714 total letters
Query= NC_021246.1
Length=281182
Score E
Sequences producing significant alignments: (Bits) Value
seq3070 122 2e-22
seq1388 87.8 3e-12
>seq3070
Length=537
Score = 122 bits (134), Expect = 2e-22
Identities = 156/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205
|| || || ||||| | |||| ||| || ||| || |||||||| | || | |
Sbjct 239 CGGAGCACAAGATGTAGAGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGGTCA 180
Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265
|| || | ||| ||||| ||||| || | | ||| ||||| ||||| |||||||| ||
Sbjct 179 TCCTCCAGTTGCTTTCCCGCAAAGATGAGGCGCTGCTGATCCGGAGGAATTCCTTCCTTG 120
Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325
|| || || ||||| || | ||| || ||||||| ||||| ||||| ||||| |||
Sbjct 119 TCCTGAATCTTGGTCTTCACATTGCTGATGCTATCGGATGACTCTACTTCGAGAGTGATA 60
Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| || || ||||||||||| || || || |||||
Sbjct 59 GTCTTTCCGGTTAGCGTTTTGACGAAGATCTGCAT 25
>seq1388
Length=1638
Score = 87.8 bits (96), Expect = 3e-12
Identities = 149/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205
|| || || || |||| || | ||| || ||||| |||||||| | || | |
Sbjct 1088 CGGAGCACAAGGTGCAGGGTGGACTCCTTCTGGATATTGTAGTCGGAAAGAGTGCGACCG 1147
Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265
|| || | || || || || ||||| | || || || || || || || ||||| ||
Sbjct 1148 TCTTCGAGCTGCTTGCCAGCGAAAATGAGTCGTTGCTGGTCCGGGGGAATACCTTCCTTG 1207
Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325
|| || |||||||| || | || ||||| ||||| ||||||||||| ||||| ||
Sbjct 1208 TCCTGAATTTTGGTCTTAACGTTCTCGATAGTGTCGGAGGACTCAACTTCAAGAGTGATG 1267
Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361
|| || || |||| || || || || || ||||||
Sbjct 1268 GTCTTTCCGGTTAAGGTCTTGACGAAAATCTGCATT 1303
Score = 86.0 bits (94), Expect = 1e-11
Identities = 148/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205
|| || || ||||| | |||| |||||| || || || ||||| | || | |
Sbjct 314 CGGAGCACAAGATGAAGAGTAGACTCTTTCTGGATGTTGTAATCGGAGAGGGTGCGACCG 373
Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265
|| || | || || || || || || | | || || || ||||| || ||||| ||
Sbjct 374 TCCTCAAGCTGCTTACCAGCGAAGATGAGACGTTGCTGGTCCGGAGGAATACCTTCCTTG 433
Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325
|| || ||||| || || | ||| ||| ||||| || || || ||||| || || ||
Sbjct 434 TCCTGAATTTTAGTCTTCACATTCTCAATGGTATCCGAGGATTCCACTTCAAGGGTGATC 493
Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| ||||| || || ||||| || |||||||||||
Sbjct 494 GTCTTACCAGTCAGAGTTTTCACGAATATTTGCAT 528
Score = 86.0 bits (94), Expect = 1e-11
Identities = 92/122 (75%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298
|| || || || || || ||||| || || || || ||||| || | ||| || ||
Sbjct 1409 TGCTGGTCCGGGGGAATACCTTCCTTGTCCTGGATCTTGGTCTTGACATTCTCGATGGTG 1468
Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358
||||||||||| ||||| ||||| ||||| || ||||||| ||||| ||||| || |||
Sbjct 1469 TCGGAAGACTCCACTTCGAGAGTAATAGTCTTGCCTGTTAAGGTTTTAACAAAGATCTGC 1528
Query 193359 AT 193360
||
Sbjct 1529 AT 1530
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 899617817802960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |