Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12- 21] 3,253 sequences; 60,403,714 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq3070 122 2e-22 seq1388 87.8 3e-12 >seq3070 Length=537 Score = 122 bits (134), Expect = 2e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || || || ||||| | |||| ||| || ||| || |||||||| | || | | Sbjct 239 CGGAGCACAAGATGTAGAGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGGTCA 180 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | ||| ||||| ||||| || | | ||| ||||| ||||| |||||||| || Sbjct 179 TCCTCCAGTTGCTTTCCCGCAAAGATGAGGCGCTGCTGATCCGGAGGAATTCCTTCCTTG 120 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || || ||||| || | ||| || ||||||| ||||| ||||| ||||| ||| Sbjct 119 TCCTGAATCTTGGTCTTCACATTGCTGATGCTATCGGATGACTCTACTTCGAGAGTGATA 60 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || ||||||||||| || || || ||||| Sbjct 59 GTCTTTCCGGTTAGCGTTTTGACGAAGATCTGCAT 25 >seq1388 Length=1638 Score = 87.8 bits (96), Expect = 3e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || || || || |||| || | ||| || ||||| |||||||| | || | | Sbjct 1088 CGGAGCACAAGGTGCAGGGTGGACTCCTTCTGGATATTGTAGTCGGAAAGAGTGCGACCG 1147 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | || || || || ||||| | || || || || || || || ||||| || Sbjct 1148 TCTTCGAGCTGCTTGCCAGCGAAAATGAGTCGTTGCTGGTCCGGGGGAATACCTTCCTTG 1207 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || |||||||| || | || ||||| ||||| ||||||||||| ||||| || Sbjct 1208 TCCTGAATTTTGGTCTTAACGTTCTCGATAGTGTCGGAGGACTCAACTTCAAGAGTGATG 1267 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || |||| || || || || || |||||| Sbjct 1268 GTCTTTCCGGTTAAGGTCTTGACGAAAATCTGCATT 1303 Score = 86.0 bits (94), Expect = 1e-11 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || || || ||||| | |||| |||||| || || || ||||| | || | | Sbjct 314 CGGAGCACAAGATGAAGAGTAGACTCTTTCTGGATGTTGTAATCGGAGAGGGTGCGACCG 373 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | || || || || || || | | || || || ||||| || ||||| || Sbjct 374 TCCTCAAGCTGCTTACCAGCGAAGATGAGACGTTGCTGGTCCGGAGGAATACCTTCCTTG 433 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || ||||| || || | ||| ||| ||||| || || || ||||| || || || Sbjct 434 TCCTGAATTTTAGTCTTCACATTCTCAATGGTATCCGAGGATTCCACTTCAAGGGTGATC 493 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||| || || ||||| || ||||||||||| Sbjct 494 GTCTTACCAGTCAGAGTTTTCACGAATATTTGCAT 528 Score = 86.0 bits (94), Expect = 1e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 || || || || || || ||||| || || || || ||||| || | ||| || || Sbjct 1409 TGCTGGTCCGGGGGAATACCTTCCTTGTCCTGGATCTTGGTCTTGACATTCTCGATGGTG 1468 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 ||||||||||| ||||| ||||| ||||| || ||||||| ||||| ||||| || ||| Sbjct 1469 TCGGAAGACTCCACTTCGAGAGTAATAGTCTTGCCTGTTAAGGTTTTAACAAAGATCTGC 1528 Query 193359 AT 193360 || Sbjct 1529 AT 1530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899617817802960