Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12- 21] 3,253 sequences; 60,403,714 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq1388 98.7 2e-15 >seq1388 Length=1638 Score = 98.7 bits (108), Expect = 2e-15 Identities = 141/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 171872 AGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACC 171931 ||||| |||||| || || ||||| || | || || |||| || | || ||||| Sbjct 103 AGTAGACTCTTTCTGGATGTTGTAATCGGAAAGAGTGCGACCGTCCTCGAGCTGCTTACC 162 Query 171932 AGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTT 171991 || || || | | ||| ||||| || || || ||||| ||||| || || ||| | || Sbjct 163 GGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCTTCCTTATCCTGAATCTTAGTCTT 222 Query 171992 TACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGT 172051 || || ||||| || || ||||| || || ||||||||||| || ||||| | || Sbjct 223 GACGTTCTCAATAGTGTCGGAGGATTCCACCTCAAGAGTAATGGTCTTTCCAGTAAGGGT 282 Query 172052 TTTAATGAATATCTGCATT 172070 || | ||| ||||||||| Sbjct 283 CTTCACGAAAATCTGCATT 301 Score = 84.2 bits (92), Expect = 4e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | | || | ||| | ||| ||||| | || || ||| || || || Sbjct 527 ATACCACCACGCAAGCGAAGTACGAGATGCAAAGTGGATTCCTTCTGAATGTTGTAGTCA 586 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || | || || | ||| || ||||| || || | | || || || || Sbjct 587 GAAAGGGTGCGGCCATCCTCGAGTTGCTTTCCAGCGAAGATAAGACGTTGCTGATCCGGG 646 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| || ||| | || || || || ||||| || ||||| Sbjct 647 GGGATACCTTCCTTGTCTTGAATCTTAGTCTTCACGTTCTCGATGGTATCAGAGGATTCG 706 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| ||||||||||| || ||||| | || || | || ||||||||| Sbjct 707 ACTTCAAGAGTAATGGTCTTTCCAGTAAGAGTCTTGACAAAAATCTGCATT 757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905099194907400