Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12- 21] 3,253 sequences; 60,403,714 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq239 127 6e-24 seq6 109 2e-18 seq29 91.5 4e-13 >seq239 Length=36123 Score = 127 bits (140), Expect = 6e-24 Identities = 181/253 (72%), Gaps = 4/253 (2%) Strand=Plus/Plus Query 302593 CGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGA 302652 |||||||| |||||||||||| || || || ||||| |||||||| ||||| | ||| Sbjct 29007 CGACGCTGGATATAACCAGTTTCAGCAGTCTTGACAGCGGTATCAATAAGACCTTCTCGA 29066 Query 302653 CCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCA 302712 ||| |||| || |||||||| | ||| ||| || || | | | | || |||| Sbjct 29067 CCAGCCATGGCGTGGAAGAAGAACTCGGACGGGGTAAGGCCACGTAGATAAGAATTCTCG 29126 Query 302713 ACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTC 302772 ||||| ||||| || ||||| || | || |||||||||||| || || || | || | Sbjct 29127 ACGAAGCCACGGGCTTCGGGAGAGTAATCATCCTTGGTAAAGTGGGGGAGCGTACGGTAC 29186 Query 302773 TCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGA--AATCA 302830 | | ||| | || |||||||| || ||||| ||||||| || | || || | ||| Sbjct 29187 TTGAATCCGAAGGGAATACGCTTGCCCTCAACAATCTGCTGACC--GACAAGAGCAGTCA 29244 Query 302831 TCTGCGAAATATT 302843 |||| || || || Sbjct 29245 TCTGTGAGATGTT 29257 >seq6 Length=1299473 Score = 109 bits (120), Expect = 2e-18 Identities = 159/222 (72%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 133437 TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGA 133496 |||| || || |||||| |||||||||| || ||||||||||||||| || Sbjct 1189067 TTCCCTGCATCCGAAAGAAGGCTGACTGGGCCATCCGGTGGATCCAGGACAAGGACTCGT 1189008 Query 133497 GTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGT 133556 ||||| || || ||||| ||||||| || ||||| || || ||||| ||||| | Sbjct 1189007 CCTTTGCCCAGCGCCTGGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGCGGTGCCT 1188948 Query 133557 TCTGC-TCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAAC 133615 | ||| || || || ||||| || |||||||| | | ||||| ||| || || ||| Sbjct 1188947 T-TGCTTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGCCTGACCTTCTCCAAC 1188889 Query 133616 GAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCC 133657 || || ||||| | || |||| |||||||| || || ||| Sbjct 1188888 GAGCTGATTTCTCGTGATGAGGGCCTTCACACTGACTTCGCC 1188847 >seq29 Length=396728 Score = 91.5 bits (100), Expect = 4e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466 || || ||||| | | || || ||||| | | |||| |||||| | || | | || Sbjct 382864 ATGAGTCCACAAATCTCGCAGACGTGGACTCGGAAAGCGTCAGATACTTCGAACAAACGC 382805 Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526 |||| ||| | || ||||| | |||||| ||||||||||||||||| ||||| Sbjct 382804 TCCTTCAGGAACGCCGCCGCTCCGTGAGCAATCATGCAATCACGCTCCATTTCTCCGAAC 382745 Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTG 251564 || ||||||||||| ||||| | |||||| ||||||| Sbjct 382744 CGCAGACCACCATCTCGAGCACGACCCTCCACAGGCTG 382707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471756256022261