Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12-
21] 3,253 sequences; 60,403,714 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq239 127 6e-24
seq6 109 2e-18
seq29 91.5 4e-13
>seq239
Length=36123
Score = 127 bits (140), Expect = 6e-24
Identities = 181/253 (72%), Gaps = 4/253 (2%)
Strand=Plus/Plus
Query 302593 CGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGA 302652
|||||||| |||||||||||| || || || ||||| |||||||| ||||| | |||
Sbjct 29007 CGACGCTGGATATAACCAGTTTCAGCAGTCTTGACAGCGGTATCAATAAGACCTTCTCGA 29066
Query 302653 CCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCA 302712
||| |||| || |||||||| | ||| ||| || || | | | | || ||||
Sbjct 29067 CCAGCCATGGCGTGGAAGAAGAACTCGGACGGGGTAAGGCCACGTAGATAAGAATTCTCG 29126
Query 302713 ACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTC 302772
||||| ||||| || ||||| || | || |||||||||||| || || || | || |
Sbjct 29127 ACGAAGCCACGGGCTTCGGGAGAGTAATCATCCTTGGTAAAGTGGGGGAGCGTACGGTAC 29186
Query 302773 TCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGA--AATCA 302830
| | ||| | || |||||||| || ||||| ||||||| || | || || | |||
Sbjct 29187 TTGAATCCGAAGGGAATACGCTTGCCCTCAACAATCTGCTGACC--GACAAGAGCAGTCA 29244
Query 302831 TCTGCGAAATATT 302843
|||| || || ||
Sbjct 29245 TCTGTGAGATGTT 29257
>seq6
Length=1299473
Score = 109 bits (120), Expect = 2e-18
Identities = 159/222 (72%), Gaps = 2/222 (1%)
Strand=Plus/Minus
Query 133437 TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGA 133496
|||| || || |||||| |||||||||| || ||||||||||||||| ||
Sbjct 1189067 TTCCCTGCATCCGAAAGAAGGCTGACTGGGCCATCCGGTGGATCCAGGACAAGGACTCGT 1189008
Query 133497 GTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGT 133556
||||| || || ||||| ||||||| || ||||| || || ||||| ||||| |
Sbjct 1189007 CCTTTGCCCAGCGCCTGGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGCGGTGCCT 1188948
Query 133557 TCTGC-TCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAAC 133615
| ||| || || || ||||| || |||||||| | | ||||| ||| || || |||
Sbjct 1188947 T-TGCTTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGCCTGACCTTCTCCAAC 1188889
Query 133616 GAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCC 133657
|| || ||||| | || |||| |||||||| || || |||
Sbjct 1188888 GAGCTGATTTCTCGTGATGAGGGCCTTCACACTGACTTCGCC 1188847
>seq29
Length=396728
Score = 91.5 bits (100), Expect = 4e-13
Identities = 115/158 (73%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466
|| || ||||| | | || || ||||| | | |||| |||||| | || | | ||
Sbjct 382864 ATGAGTCCACAAATCTCGCAGACGTGGACTCGGAAAGCGTCAGATACTTCGAACAAACGC 382805
Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526
|||| ||| | || ||||| | |||||| ||||||||||||||||| |||||
Sbjct 382804 TCCTTCAGGAACGCCGCCGCTCCGTGAGCAATCATGCAATCACGCTCCATTTCTCCGAAC 382745
Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTG 251564
|| ||||||||||| ||||| | |||||| |||||||
Sbjct 382744 CGCAGACCACCATCTCGAGCACGACCCTCCACAGGCTG 382707
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471756256022261
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |