Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12- 21] 3,253 sequences; 60,403,714 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq5 154 2e-31 seq6 131 2e-24 seq3 122 1e-21 seq86 104 3e-16 seq717 95.1 1e-13 seq1 87.8 2e-11 >seq5 Length=1316942 Score = 154 bits (170), Expect = 2e-31 Identities = 222/313 (71%), Gaps = 0/313 (0%) Strand=Plus/Minus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 |||||||||||| || || |||| ||| ||||| ||||||||||| | || |||||||| Sbjct 714086 CTGGTCGACGTATCGAGCAGTGTTGTTGAAGACACGGAGCATGGGAATGACACCGTTGGA 714027 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 |||||||| || || | ||| | ||| | ||| || | ||| ||| | || Sbjct 714026 GGTACCGTTGGTACCGGCAATGTAAGAGCCAGTGGCACGGATACGGTGAGCGTTGAGACC 713967 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 ||| ||||| ||| ||||||||| | || ||| ||||| ||||| ||||| ||||| Sbjct 713966 GATACCGCCAGCCATCTTGGAGATCATGGCACACGTCTTGAGAGTGTCATAGATACCCTC 713907 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 ||| || |||||||||| || || ||||| || || || || || | || || Sbjct 713906 GATGCTATCCTCCTTCATGTCAACCAGGAAGCAGGAAGACAGCTGGGGCTGAGGGGTACC 713847 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 |||||||| || ||||||| || ||| |||| || | |||||| || |||||| Sbjct 713846 AGCGTTGAAAAGGGTGGGCGAAGCATGGGTAAACAGCTTGCTGGACATGAGGTTGTAGGT 713787 Query 1630365 GGCGAGCACGCGC 1630377 | || || ||| Sbjct 713786 CTCCAGGACACGC 713774 >seq6 Length=1299473 Score = 131 bits (144), Expect = 2e-24 Identities = 174/242 (72%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || || || ||| |||||| |||||||||||||| |||| ||||| Sbjct 1188551 GCCTTCTGGTAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCGAGGGAGATG 1188610 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||||| || ||||||| ||| ||| ||||| | | Sbjct 1188611 TTCTCCATGAAGTCGAAGGGGTTGGTCGACTTGTAGACCTTCTCGTTGCCGAGAGCGACA 1188670 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 || || || ||||| || ||||| |||||||| ||||||| | | ||||||||||| Sbjct 1188671 AGAAGACGATCGGCAACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGAGC 1188730 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 || || ||||| | |||| | | ||||| |||||||| |||||| || |||| Sbjct 1188731 AGGGCGCAGGGCAGAGCCTCGGTGAGGAACTCCTTCTCGATGGTGACGGCATCAGTGATG 1188790 Query 868931 AT 868932 || Sbjct 1188791 AT 1188792 Score = 100 bits (110), Expect = 3e-15 Identities = 134/181 (74%), Gaps = 13/181 (7%) Strand=Plus/Plus Query 869195 ATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATG 869254 |||| |||||| |||| ||||| ||||||||||| |||||||||||||| |||||| Sbjct 1188881 ATCAGCTCGTTGGAGAAGGTCAGGCCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATG 1188940 Query 869255 GCGCAGAAACTGC-CCG-AGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCT 869312 | || || || ||| ||| ||||| ||||| || || |||||| | | || |||| Sbjct 1188941 --GAAGCAAAGGCACCGCTGAAGAAGATACCCTCAACAGCAGCAAAGGCAACCAGGCGCT 1188998 Query 869313 CGGCAAAGGTGTCGAGGCCCTCCTTG---TTGATCCACTTCATCGCCCAGTCGGCCTTTT 869369 ||||||| | |||| |||||| | ||||||| || |||||||| ||||| | Sbjct 1188999 GGGCAAAG--GACGAG----TCCTTGTCCTGGATCCACCGGATGGCCCAGTCAGCCTTCT 1189052 Query 869370 T 869370 | Sbjct 1189053 T 1189053 >seq3 Length=1541150 Score = 122 bits (134), Expect = 1e-21 Identities = 91/107 (85%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 ||| ||||||| || ||||||||||| || ||||| | || |||||| | || |||||| Sbjct 1214488 GCCTCCAACTATCTTGACATCAAGCCCCTTCTCGACGTGGGCTGCAAGACCGTTGCCAAC 1214547 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACAT 1592292 ||||||||||||||||| |||||||||||||| ||||| || ||||| Sbjct 1214548 ATGATCAAGGGCAAGTCCCCCGAGGAGATCCGAAAGACGTTCAACAT 1214594 >seq86 Length=154714 Score = 104 bits (114), Expect = 3e-16 Identities = 118/157 (75%), Gaps = 1/157 (1%) Strand=Plus/Minus Query 19037 GCGCCAAGAG-GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAG 19095 ||| ||||| ||||||| |||||| | || || | || |||||| || | | Sbjct 87376 GCGACAAGAACGACAGCACTGGCGGCTCTGTCACCTATGTCACCCGCAACTCCCCCGTTG 87317 Query 19096 GCCTCGGCGAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGA 19155 |||||||||||| ||||| |||||| |||||||| | ||||| ||||| |||||||| | Sbjct 87316 GCCTCGGCGAGCGTTGCTTCGACAAGCTCGAGGCCACCCTCGCTCACGCTATGCTGTCCA 87257 Query 19156 TCCCGGCCACCAAGGGATTCGAGATTGGCAGCGGGTT 19192 |||| || |||||| || ||||||||| ||| || Sbjct 87256 TCCCCGCAGTCAAGGGCTTTGAGATTGGCTCCGGTTT 87220 >seq717 Length=6726 Score = 95.1 bits (104), Expect = 1e-13 Identities = 75/90 (83%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 19095 GGCCTCGGCGAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCG 19154 |||||||||||||||| |||||||||| | ||||| |||||||||||||| |||| Sbjct 1283 GGCCTCGGCGAGCCGTCCTTTGACAAGCTTGAGGCTCTCCTCGCCCACGCCATCATGTCT 1342 Query 19155 ATCCCGGCCACCAAGGGATTCGAGATTGGC 19184 || || || |||||||| || ||||||||| Sbjct 1343 ATTCCTGCTACCAAGGGCTTTGAGATTGGC 1372 Score = 93.3 bits (102), Expect = 5e-13 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 18358 CCGCGGCCCTCACACGCCGACTACACCTACATGGCCAAGTACGGCATCAAGGCGTCGTCG 18417 ||||| ||||| |||||||||| || ||| | | ||||| || | |||||| || || Sbjct 860 CCGCGCCCCTCCCACGCCGACTGGACTTACCTCGAGAAGTATGGTACCAAGGCCTCCTCT 919 Query 18418 GGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATGCGCGTCGCCGCCGGCGCGGTCGCC 18477 ||||| |||||| ||||| ||||| | ||||||||||||||||| || ||| Sbjct 920 GGCGGCGGCCGGAGCAGCGCCCGTGAGACAATTGCCCGCGTCGCCGCCGGCGCTGTTGCC 979 Query 18478 GAGAAATGGCT 18488 ||||| ||||| Sbjct 980 GAGAAGTGGCT 990 >seq1 Length=2087327 Score = 87.8 bits (96), Expect = 2e-11 Identities = 129/181 (71%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 1574058 CTGCCGCCCGGACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCG 1574117 || || ||||| ||||| ||| ||||||| ||||||||||||||| || | || || | Sbjct 1570214 CTACCTCCCGGCCGCCAAAAGCTGATCATTCTCGACGAGGCCGACAGCATGACATCTGGC 1570273 Query 1574118 GCCCAGCAGGCCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTG 1574177 |||||||| ||||| || || ||||| | | ||||||| || | ||||| | Sbjct 1570274 GCCCAGCAAGCCCTCCGACGAACGATGGAGATCTATTCCAACACCACCAGATTTGCATTC 1570333 Query 1574178 GCGTGCAACACGTCGTCGATGGTCATCGAGGCCCTCCAAAGTC--GCTGCGCCATTCTGC 1574235 || ||||| |||| | |||| ||| |||| | |||| | ||||||||||| | Sbjct 1570334 GCCTGCAATCAGTCGAACAAAATCATTGAGCCCCTGC--AGTCGAGATGCGCCATTCTAC 1570391 Query 1574236 G 1574236 | Sbjct 1570392 G 1570392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106872243586201