Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12-
21] 3,253 sequences; 60,403,714 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq5 154 2e-31
seq6 131 2e-24
seq3 122 1e-21
seq86 104 3e-16
seq717 95.1 1e-13
seq1 87.8 2e-11
>seq5
Length=1316942
Score = 154 bits (170), Expect = 2e-31
Identities = 222/313 (71%), Gaps = 0/313 (0%)
Strand=Plus/Minus
Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124
|||||||||||| || || |||| ||| ||||| ||||||||||| | || ||||||||
Sbjct 714086 CTGGTCGACGTATCGAGCAGTGTTGTTGAAGACACGGAGCATGGGAATGACACCGTTGGA 714027
Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184
|||||||| || || | ||| | ||| | ||| || | ||| ||| | ||
Sbjct 714026 GGTACCGTTGGTACCGGCAATGTAAGAGCCAGTGGCACGGATACGGTGAGCGTTGAGACC 713967
Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244
||| ||||| ||| ||||||||| | || ||| ||||| ||||| ||||| |||||
Sbjct 713966 GATACCGCCAGCCATCTTGGAGATCATGGCACACGTCTTGAGAGTGTCATAGATACCCTC 713907
Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304
||| || |||||||||| || || ||||| || || || || || | || ||
Sbjct 713906 GATGCTATCCTCCTTCATGTCAACCAGGAAGCAGGAAGACAGCTGGGGCTGAGGGGTACC 713847
Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364
|||||||| || ||||||| || ||| |||| || | |||||| || ||||||
Sbjct 713846 AGCGTTGAAAAGGGTGGGCGAAGCATGGGTAAACAGCTTGCTGGACATGAGGTTGTAGGT 713787
Query 1630365 GGCGAGCACGCGC 1630377
| || || |||
Sbjct 713786 CTCCAGGACACGC 713774
>seq6
Length=1299473
Score = 131 bits (144), Expect = 2e-24
Identities = 174/242 (72%), Gaps = 0/242 (0%)
Strand=Plus/Plus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| || || || ||| |||||| |||||||||||||| |||| |||||
Sbjct 1188551 GCCTTCTGGTAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCGAGGGAGATG 1188610
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810
|||||| | ||| ||||||| || ||||||| ||| ||| ||||| | |
Sbjct 1188611 TTCTCCATGAAGTCGAAGGGGTTGGTCGACTTGTAGACCTTCTCGTTGCCGAGAGCGACA 1188670
Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870
|| || || ||||| || ||||| |||||||| ||||||| | | |||||||||||
Sbjct 1188671 AGAAGACGATCGGCAACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGAGC 1188730
Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930
|| || ||||| | |||| | | ||||| |||||||| |||||| || ||||
Sbjct 1188731 AGGGCGCAGGGCAGAGCCTCGGTGAGGAACTCCTTCTCGATGGTGACGGCATCAGTGATG 1188790
Query 868931 AT 868932
||
Sbjct 1188791 AT 1188792
Score = 100 bits (110), Expect = 3e-15
Identities = 134/181 (74%), Gaps = 13/181 (7%)
Strand=Plus/Plus
Query 869195 ATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATG 869254
|||| |||||| |||| ||||| ||||||||||| |||||||||||||| ||||||
Sbjct 1188881 ATCAGCTCGTTGGAGAAGGTCAGGCCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATG 1188940
Query 869255 GCGCAGAAACTGC-CCG-AGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCT 869312
| || || || ||| ||| ||||| ||||| || || |||||| | | || ||||
Sbjct 1188941 --GAAGCAAAGGCACCGCTGAAGAAGATACCCTCAACAGCAGCAAAGGCAACCAGGCGCT 1188998
Query 869313 CGGCAAAGGTGTCGAGGCCCTCCTTG---TTGATCCACTTCATCGCCCAGTCGGCCTTTT 869369
||||||| | |||| |||||| | ||||||| || |||||||| ||||| |
Sbjct 1188999 GGGCAAAG--GACGAG----TCCTTGTCCTGGATCCACCGGATGGCCCAGTCAGCCTTCT 1189052
Query 869370 T 869370
|
Sbjct 1189053 T 1189053
>seq3
Length=1541150
Score = 122 bits (134), Expect = 1e-21
Identities = 91/107 (85%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245
||| ||||||| || ||||||||||| || ||||| | || |||||| | || ||||||
Sbjct 1214488 GCCTCCAACTATCTTGACATCAAGCCCCTTCTCGACGTGGGCTGCAAGACCGTTGCCAAC 1214547
Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACAT 1592292
||||||||||||||||| |||||||||||||| ||||| || |||||
Sbjct 1214548 ATGATCAAGGGCAAGTCCCCCGAGGAGATCCGAAAGACGTTCAACAT 1214594
>seq86
Length=154714
Score = 104 bits (114), Expect = 3e-16
Identities = 118/157 (75%), Gaps = 1/157 (1%)
Strand=Plus/Minus
Query 19037 GCGCCAAGAG-GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAG 19095
||| ||||| ||||||| |||||| | || || | || |||||| || | |
Sbjct 87376 GCGACAAGAACGACAGCACTGGCGGCTCTGTCACCTATGTCACCCGCAACTCCCCCGTTG 87317
Query 19096 GCCTCGGCGAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGA 19155
|||||||||||| ||||| |||||| |||||||| | ||||| ||||| |||||||| |
Sbjct 87316 GCCTCGGCGAGCGTTGCTTCGACAAGCTCGAGGCCACCCTCGCTCACGCTATGCTGTCCA 87257
Query 19156 TCCCGGCCACCAAGGGATTCGAGATTGGCAGCGGGTT 19192
|||| || |||||| || ||||||||| ||| ||
Sbjct 87256 TCCCCGCAGTCAAGGGCTTTGAGATTGGCTCCGGTTT 87220
>seq717
Length=6726
Score = 95.1 bits (104), Expect = 1e-13
Identities = 75/90 (83%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 19095 GGCCTCGGCGAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCG 19154
|||||||||||||||| |||||||||| | ||||| |||||||||||||| ||||
Sbjct 1283 GGCCTCGGCGAGCCGTCCTTTGACAAGCTTGAGGCTCTCCTCGCCCACGCCATCATGTCT 1342
Query 19155 ATCCCGGCCACCAAGGGATTCGAGATTGGC 19184
|| || || |||||||| || |||||||||
Sbjct 1343 ATTCCTGCTACCAAGGGCTTTGAGATTGGC 1372
Score = 93.3 bits (102), Expect = 5e-13
Identities = 99/131 (76%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 18358 CCGCGGCCCTCACACGCCGACTACACCTACATGGCCAAGTACGGCATCAAGGCGTCGTCG 18417
||||| ||||| |||||||||| || ||| | | ||||| || | |||||| || ||
Sbjct 860 CCGCGCCCCTCCCACGCCGACTGGACTTACCTCGAGAAGTATGGTACCAAGGCCTCCTCT 919
Query 18418 GGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATGCGCGTCGCCGCCGGCGCGGTCGCC 18477
||||| |||||| ||||| ||||| | ||||||||||||||||| || |||
Sbjct 920 GGCGGCGGCCGGAGCAGCGCCCGTGAGACAATTGCCCGCGTCGCCGCCGGCGCTGTTGCC 979
Query 18478 GAGAAATGGCT 18488
||||| |||||
Sbjct 980 GAGAAGTGGCT 990
>seq1
Length=2087327
Score = 87.8 bits (96), Expect = 2e-11
Identities = 129/181 (71%), Gaps = 4/181 (2%)
Strand=Plus/Plus
Query 1574058 CTGCCGCCCGGACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCG 1574117
|| || ||||| ||||| ||| ||||||| ||||||||||||||| || | || || |
Sbjct 1570214 CTACCTCCCGGCCGCCAAAAGCTGATCATTCTCGACGAGGCCGACAGCATGACATCTGGC 1570273
Query 1574118 GCCCAGCAGGCCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTG 1574177
|||||||| ||||| || || ||||| | | ||||||| || | ||||| |
Sbjct 1570274 GCCCAGCAAGCCCTCCGACGAACGATGGAGATCTATTCCAACACCACCAGATTTGCATTC 1570333
Query 1574178 GCGTGCAACACGTCGTCGATGGTCATCGAGGCCCTCCAAAGTC--GCTGCGCCATTCTGC 1574235
|| ||||| |||| | |||| ||| |||| | |||| | ||||||||||| |
Sbjct 1570334 GCCTGCAATCAGTCGAACAAAATCATTGAGCCCCTGC--AGTCGAGATGCGCCATTCTAC 1570391
Query 1574236 G 1574236
|
Sbjct 1570392 G 1570392
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6106872243586201
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |