Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12-
21] 3,253 sequences; 60,403,714 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq3070 134 1e-26
seq1388 113 4e-20
seq8 107 2e-18
>seq3070
Length=537
Score = 134 bits (148), Expect = 1e-26
Identities = 158/210 (75%), Gaps = 3/210 (1%)
Strand=Plus/Plus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
|||||||||||| | |||||||||||||| || ||||| || ||||||||||| | |
Sbjct 24 GATGCAGATCTTCGTCAAAACGCTAACCGGAAAGACTATCACTCTCGAAGTAGAGTCATC 83
Query 24763 CGACA-CAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821
||| | || || || | || || ||||| || ||||| |||||||| ||||| ||||
Sbjct 84 CGATAGCATCAGCAATGTGAAGAC-CAAGATTCAGGACAAGGAAGGAATTCCTCCGGATC 142
Query 24822 AACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATA 24881
| || || | |||||||| || || || ||||||||| | | |||| || || |
Sbjct 143 AGCAGCGCCTCATCTTTGCGGGAAAGCAACTGGAGGATGACCGCACTCTGTCCGACTACA 202
Query 24882 ACATTCAAAAGGAATCGACACTACA-CTTG 24910
||||||| ||||| || || ||||| ||||
Sbjct 203 ACATTCAGAAGGAGTCTACTCTACATCTTG 232
>seq1388
Length=1638
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||||||| ||||||| |||| || || |||||||| |||||||| || | ||
Sbjct 1530 ATGCAGATCTTTGTTAAAACCTTAACAGGCAAGACTATTACTCTCGAAGTGGAGTCTTCC 1471
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || |||||||| ||||| ||||| || || || || ||
Sbjct 1470 GACACCATCGAGAATGTCAAGACCAAGATCCAGGACAAGGAAGGTATTCCCCCGGACCAG 1411
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|||||| | ||||| || || || ||||| || || | | | || || || |||
Sbjct 1410 CAACGTCTTATCTTCGCTGGCAAGCAGCTCGAAGACGGCCGTACTCTTTCTGACTACAAC 1351
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
|| || ||||| || || || ||| | ||| | || | ||||| ||
Sbjct 1350 ATCCAGAAGGAGTCCACCCTGCACCTTGTGCTCCGTCTCCGCGGTGG 1304
Score = 98.7 bits (108), Expect = 9e-16
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||| || | || || ||||||| || || || || || ||||| || || ||
Sbjct 984 ATGCAGATTTTCGTCAAGACCTTAACCGGAAAGACCATCACTCTTGAAGTTGAGTCCTCC 925
Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
||||| | || |||| || || || ||| || || || ||||| || || || || ||
Sbjct 924 GACACTATCGAGAACGTGAAGACTAA-GATTCAGGATAAGGAAGGCATCCCCCCGGACCA 866
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
|| ||| | ||||| || || || || || ||||| | | | |||| || || ||
Sbjct 865 GCAGCGTCTCATCTTCGCTGGTAAGCAACTTGAGGACGGTCGCACCCTGTCTGACTACAA 806
Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
||| ||||||||||| || || || | ||| |||| | ||||| ||
Sbjct 805 CATCCAAAAGGAATCTACTCTTCATCTCGTGCTGCGTCTTCGCGGCGG 758
>seq8
Length=1068389
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||||||| | || || || |||||||| ||||| || ||||| || || | |
Sbjct 631610 ATGCAGATCTTTGTCAAGACCCTCACCGGTAAGACTATCACCCTCGAGGTGGAGTCATCT 631669
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| || | || | || || ||||| || ||||| || || || || || |||||
Sbjct 631670 GATACCATCGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGCATTCCCCCGGATCAG 631729
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| || | ||||| ||||| || ||||| |||||| ||| | |||| || || |||
Sbjct 631730 CAGCGACTCATCTTCGCCGGAAAGCAGCTTGAGGATGGTCGAACCCTGTCTGACTACAAC 631789
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
|| || || || || || |||||| |||| | ||| | || || ||
Sbjct 631790 ATCCAGAAAGAGTCTACTCTACACCTGGTTCTCCGACTTCGTGGTGG 631836
Score = 93.3 bits (102), Expect = 4e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | || || || ||||| || || || || || || || || ||| |
Sbjct 631838 ATGCAGATCTTCGTGAAGACCCTGACCGGAAAGACGATCACTCTTGAGGTCGAGTCCAGC 631897
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| || | || | || || ||||| || ||||| || || || || ||||| ||
Sbjct 631898 GATACCATCGACAATGTGAAGTCGAAGATTCAGGACAAGGAGGGCATTCCCCCCGACCAG 631957
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| || | |||||||| || || |||||||||||| | | | || ||||| |||
Sbjct 631958 CAGCGACTTATCTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACCCTGAGCGATTACAAC 632017
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912
|| || ||||| || || || ||| ||||
Sbjct 632018 ATCCAGAAGGAGTCTACCCTTCACCTGGT 632046
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449879306038840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |