Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12-
21] 3,253 sequences; 60,403,714 total letters
Query= NC_021924.1
Length=129052
Score E
Sequences producing significant alignments: (Bits) Value
seq6 122 7e-23
seq3070 86.0 5e-12
seq1388 84.2 2e-11
>seq6
Length=1299473
Score = 122 bits (134), Expect = 7e-23
Identities = 217/317 (68%), Gaps = 0/317 (0%)
Strand=Plus/Minus
Query 34318 TCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGC 34377
|| ||||| ||||| | || | | || | ||||||||| |||||| ||||| ||
Sbjct 1128123 TCGGTCTCGGGGTTCTTGCACTTCTTGCAGAGAACAAACTTGTTGATGAAGCCATCGAGG 1128064
Query 34378 AGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTGTAA 34437
| ||||| | ||| | | ||||||| |||||||| ||| | || |||| |||
Sbjct 1128063 TGATCCTGGAGCTTGGCAGCATCGTGGGCGCCGTTGATGATCCAACGGTCGTCCTTGGGG 1128004
Query 34438 TCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGGA 34497
|| | | || || ||||| |||||| | ||||||||||| | ||| | |||
Sbjct 1128003 TCAATGTTTGTCTGAGCGCCAAGCTCGAAACCGAAGTACTTGATGACGTAGGCACCGGGA 1127944
Query 34498 CGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCC 34557
|| |||| | || |||| | || |||||||| ||| |||||||||||||| ||
Sbjct 1127943 CGGGCAAGAGACTGAGCGACGCTGCTCAGGTTGACGACGACGGTCTTGATGCCGTTTCCT 1127884
Query 34558 TTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGCCACA 34617
|| ||||| | ||| | ||||||| ||| ||||| || ||||| |||| |||
Sbjct 1127883 TTGCCTTCAATCTTTGTCTGGATGCGCTCCATCTTGTAACGATAGAAGACGTCGCTGACA 1127824
Query 34618 TTGCGGTTAACGTTCAC 34634
| |||| ||||| ||
Sbjct 1127823 TCGCGGCGGACGTTGAC 1127807
>seq3070
Length=537
Score = 86.0 bits (94), Expect = 5e-12
Identities = 139/200 (70%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329
|| ||||| || || |||||||| ||||||| || || || || ||||| ||| |
Sbjct 22 AAGATGCAGATCTTCGTCAAAACGCTAACCGGAAAGACTATCACTCTCGAAGTAGAGTCA 81
Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389
||||| || || | || || |||||| ||||| ||||| | || ||||
Sbjct 82 TCCGATAGCATCAGCAATGTGAAGACCAAGATTCAGGACAAGGAAGGAATTCCTCCGGAT 141
Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449
|| || | || || | |||||| || || |||||||||| | | || || | || |||
Sbjct 142 CAGCAGCGCCTCATCTTTGCGGGAAAGCAACTGGAGGATGACCGCACTCTGTCCGACTAC 201
Query 110450 AACATTCAAAAAGAATCTAC 110469
|||||||| || || |||||
Sbjct 202 AACATTCAGAAGGAGTCTAC 221
>seq1388
Length=1638
Score = 84.2 bits (92), Expect = 2e-11
Identities = 143/205 (70%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CGGAGCCTG 110330
|||||| || |||||||| ||| | || || || |||||||| | ||| || | |||
Sbjct 757 AATGCAGATTTTTGTCAAGACTCTTACTGGAAAGACCATTACTCTTGAAGTCGAATCCTC 698
Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390
||||| ||| | || || |||||| ||||| ||||| | ||| |||||
Sbjct 697 T-GATACCATCGAGAACGTGAAGACTAAGATTCAAGACAAGGAAGGTATCCCCCCGGATC 639
Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450
| ||| | ||||| | || || || || || ||||||| | | || | | || ||||
Sbjct 638 AGCAACGTCTTATCTTCGCTGGAAAGCAACTCGAGGATGGCCGCACCCTTTCTGACTACA 579
Query 110451 ACATTCAAAAAGAATCTACGTTGCA 110475
||||||| || ||||| || |||||
Sbjct 578 ACATTCAGAAGGAATCCACTTTGCA 554
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 412825232507729
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |