Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12- 21] 3,253 sequences; 60,403,714 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq6 152 8e-31 seq3 125 1e-22 seq5 122 1e-21 seq1 114 2e-19 seq2475 100 5e-15 >seq6 Length=1299473 Score = 152 bits (168), Expect = 8e-31 Identities = 183/249 (73%), Gaps = 0/249 (0%) Strand=Plus/Plus Query 793892 GACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAG 793951 |||||| ||||| || || || || ||| |||||| |||||||||||||| |||| Sbjct 1188544 GACGCCGGCCTTCTGGTAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCGAG 1188603 Query 793952 CGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAG 794011 ||||| |||||| | ||| ||||||| || | |||| ||||||| ||||| Sbjct 1188604 GGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTCGACTTGTAGACCTTCTCGTTGCCGAG 1188663 Query 794012 CGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCAT 794071 | |||| || || ||||| ||||| ||||||||||| ||||||| | | |||||| Sbjct 1188664 AGCGACAAGAAGACGATCGGCAACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCAT 1188723 Query 794072 GCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTC 794131 ||||| || || |||||| | |||| ||| ||||| |||||||| |||||| || Sbjct 1188724 GCCGAGCAGGGCGCAGGGCAGAGCCTCGGTGAGGAACTCCTTCTCGATGGTGACGGCATC 1188783 Query 794132 GATGATGAT 794140 ||||||| Sbjct 1188784 AGTGATGAT 1188792 Score = 89.7 bits (98), Expect = 8e-12 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 794584 GGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATG 794643 || ||||||| ||| ||||| ||||| || ||||||||||| ||||||||||| || || Sbjct 1189159 GGCTCCTTGATGTAAGTGTCAATGAGTAGGGAGTAGGTCTCAGAGTGGATGTTCTCCATC 1189218 Query 794644 GCGATCTGGAAGCCATAAAAGCAG 794667 |||||||||||| || |||||| Sbjct 1189219 ATGATCTGGAAGCCGTAGAAGCAG 1189242 >seq3 Length=1541150 Score = 125 bits (138), Expect = 1e-22 Identities = 92/107 (86%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 ||| ||||||| || |||||||||||||| ||||| |||| ||||||||||| |||||| Sbjct 1214488 GCCTCCAACTATCTTGACATCAAGCCCCTTCTCGACGTGGGCTGCAAGACCGTTGCCAAC 1214547 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACAT 2035753 | |||||||||||||| |||||||| ||||| ||||| || ||||| Sbjct 1214548 ATGATCAAGGGCAAGTCCCCCGAGGAGATCCGAAAGACGTTCAACAT 1214594 >seq5 Length=1316942 Score = 122 bits (134), Expect = 1e-21 Identities = 183/260 (70%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||||||||| || || || |||| ||| ||||| ||||||||||| | | |||||||| Sbjct 714086 CTGGTCGACGTATCGAGCAGTGTTGTTGAAGACACGGAGCATGGGAATGACACCGTTGGA 714027 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 |||||||| || || | ||| | ||| | ||| || | ||| ||| | || Sbjct 714026 GGTACCGTTGGTACCGGCAATGTAAGAGCCAGTGGCACGGATACGGTGAGCGTTGAGACC 713967 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 ||| ||||| ||| ||||||||| | || ||| | || || || || ||||| ||||| Sbjct 713966 GATACCGCCAGCCATCTTGGAGATCATGGCACACGTCTTGAGAGTGTCATAGATACCCTC 713907 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 ||| || |||||||||| | ||| ||||| || || || || | | || || Sbjct 713906 GATGCTATCCTCCTTCATGTCAACCAGGAAGCAGGAAGACAGCTGGGGCTGAGGGGTACC 713847 Query 2073780 GGCATTGAAGAGCGTGGGCG 2073799 || ||||| || ||||||| Sbjct 713846 AGCGTTGAAAAGGGTGGGCG 713827 Score = 98.7 bits (108), Expect = 2e-14 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 |||||||||||| |||||||||||||| |||||||||||| |||| || || ||| | | Sbjct 4923 GTACTTGGTGACCGCCTTGGTACCCTCAGAGACGGCGTGCTTGGCAAGCTCACCGGGGAG 4864 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGG 1485562 ||| ||||| |||| ||||| ||||| |||| Sbjct 4863 GATGAGGCGGACGGAAGTCTGAATCTCTCGGG 4832 Score = 89.7 bits (98), Expect = 8e-12 Identities = 282/440 (64%), Gaps = 16/440 (4%) Strand=Plus/Minus Query 2071581 GACCTCGGTGCACAGGTTGGCCGACATCG--TGGTGCCCAGGTTCTGCTGGTTGCTGGTC 2071638 || ||| ||||| ||||||| | || ||||||||||||||| ||||||||| | Sbjct 714518 GATCTCAGTGCAGAGGTTGGAG--CTGCGGATGGTGCCCAGGTTCTTCTGGTTGCTCTTG 714461 Query 2071639 AGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCGTGACG 2071698 ||||| |||||||||| ||||||| |||| || ||||| | || ||| || | Sbjct 714460 CGGTTGCATGCGTCCTTGTACAGCATGAAGGGGTTGCCGGTCTCAGTTTGAGCCTCGAGG 714401 Query 2071699 ATGGCCGACCAAATTTGGCGCGCGGGCACCGAGGTCCTCGCGCGGCCCTNNNNNNNNNNN 2071758 ||||| |||| | | | || || |||| | ||| |||| Sbjct 714400 ATGGCGTACCACAACTTCTGAGCCTTCAT---GGTCTT---GCGACCCTTGCCAAGCTTC 714347 Query 2071759 NNNNNNN------AGAGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGGCCGGGCGCC 2071812 | | ||| || || | |||||| ||| ||| ||||| || | Sbjct 714346 TCGTACTTCTCGTATAAGGCCTCGAACTCCTCGCCGTAGCAGTCGGCAAGGCCAGGGCAC 714287 Query 2071813 TCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATAAACAGGTCG 2071872 ||| ||||| | || | ||| |||||| || | || || ||| || || || Sbjct 714286 TCGTTGGGGCACATCAGAGTCCAATCGCCGTTCTTCTCAACCCGCTTCATGAAGAGATCA 714227 Query 2071873 CACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTT 2071932 |||| ||| | || |||||||| || ||| ||| ||||||||||||||||| Sbjct 714226 GGGATCCAAAGGGCTAGGAAAAGATCGCGGGCGCGGACCTCTTCCTTGCCGTGGTTCTTG 714167 Query 2071933 TTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCG 2071992 |||||| || | |||| || || |||||||| ||||| |||||| ||| || || Sbjct 714166 CGCAGGTCCAGGAACTCGAAGACATCCGCGTGCCAGGGCTCGAGGTAGATGGCGAAAGCA 714107 Query 2071993 CCCTTGCGCTTGCCGCCGCC 2072012 ||| |||||| ||| || Sbjct 714106 CCCGGTCGCTTGTTGCCACC 714087 >seq1 Length=2087327 Score = 114 bits (126), Expect = 2e-19 Identities = 173/246 (70%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 2019195 CTGCCGCCCGGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCG 2019254 || || ||||||||||| ||| ||||||| ||||| ||||||||| || | || || | Sbjct 1570214 CTACCTCCCGGCCGCCAAAAGCTGATCATTCTCGACGAGGCCGACAGCATGACATCTGGC 1570273 Query 2019255 GCCCAGCAGGCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTG 2019314 |||||||| ||||||||| || ||||| | || ||||||| || | ||||| | Sbjct 1570274 GCCCAGCAAGCCCTCCGACGAACGATGGAGATCTATTCCAACACCACCAGATTTGCATTC 1570333 Query 2019315 GCCTGCAACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGC 2019374 |||||||| |||| | |||| || |||| ||| | |||||||| | || Sbjct 1570334 GCCTGCAATCAGTCGAACAAAATCATTGAGCCCCTGCAGTCGAGATGCGCCATTCTACGA 1570393 Query 2019375 TTTGCGCGCCTCACCGACGCCCAGATCGCCGCGCGTCTGCGCGAGATTATCGACGCCGAA 2019434 | ||| || ||||||||||| ||| |||| || | || ||||| || ||| Sbjct 1570394 TATGCCAAGCTGACCGACGCCCAAGTCGTGAAGCGTTTGATGCAAATCATCGAGGCAGAA 1570453 Query 2019435 AAGGTC 2019440 |||||| Sbjct 1570454 AAGGTC 1570459 >seq2475 Length=697 Score = 100 bits (110), Expect = 5e-15 Identities = 168/243 (69%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| ||||| ||||||||||||||||||||||| ||| | |||||||| || | | Sbjct 488 TGTACTTTGTGACAGCCTTGGTACCCTCTGAGACGGCATGCTTTGCCAGTTCACCAGGAA 429 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || || ||||| ||||| || || || | || || || ||||| | Sbjct 428 GCAGAAGACGGACGGCAGTCTGAATTTCTCGAGAAGTGAGGGTCTTCGTGTTGTTGTAGG 369 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 || || ||||||| ||| |||| || |||| || || |||||||| |||| Sbjct 368 AAGCGAGCTTAGCGGCCTCAGTGGCGATCCGCTCGAACAGATCAGCCACAAACGAATTCA 309 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 | || ||||| ||| ||||| || ||| || || || ||||| || ||||| | Sbjct 308 TAATGCTCATCGCCTTGGATGAGATACCGGTGTCCGGATGGACTTGCTTCAGGACCTTAT 249 Query 1485710 AAA 1485712 ||| Sbjct 248 AAA 246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915900363553067