Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12-
21] 3,253 sequences; 60,403,714 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq6 152 8e-31
seq3 125 1e-22
seq5 122 1e-21
seq1 114 2e-19
seq2475 100 5e-15
>seq6
Length=1299473
Score = 152 bits (168), Expect = 8e-31
Identities = 183/249 (73%), Gaps = 0/249 (0%)
Strand=Plus/Plus
Query 793892 GACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAG 793951
|||||| ||||| || || || || ||| |||||| |||||||||||||| ||||
Sbjct 1188544 GACGCCGGCCTTCTGGTAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCGAG 1188603
Query 793952 CGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAG 794011
||||| |||||| | ||| ||||||| || | |||| ||||||| |||||
Sbjct 1188604 GGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTCGACTTGTAGACCTTCTCGTTGCCGAG 1188663
Query 794012 CGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCAT 794071
| |||| || || ||||| ||||| ||||||||||| ||||||| | | ||||||
Sbjct 1188664 AGCGACAAGAAGACGATCGGCAACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCAT 1188723
Query 794072 GCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTC 794131
||||| || || |||||| | |||| ||| ||||| |||||||| |||||| ||
Sbjct 1188724 GCCGAGCAGGGCGCAGGGCAGAGCCTCGGTGAGGAACTCCTTCTCGATGGTGACGGCATC 1188783
Query 794132 GATGATGAT 794140
|||||||
Sbjct 1188784 AGTGATGAT 1188792
Score = 89.7 bits (98), Expect = 8e-12
Identities = 70/84 (83%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 794584 GGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATG 794643
|| ||||||| ||| ||||| ||||| || ||||||||||| ||||||||||| || ||
Sbjct 1189159 GGCTCCTTGATGTAAGTGTCAATGAGTAGGGAGTAGGTCTCAGAGTGGATGTTCTCCATC 1189218
Query 794644 GCGATCTGGAAGCCATAAAAGCAG 794667
|||||||||||| || ||||||
Sbjct 1189219 ATGATCTGGAAGCCGTAGAAGCAG 1189242
>seq3
Length=1541150
Score = 125 bits (138), Expect = 1e-22
Identities = 92/107 (86%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706
||| ||||||| || |||||||||||||| ||||| |||| ||||||||||| ||||||
Sbjct 1214488 GCCTCCAACTATCTTGACATCAAGCCCCTTCTCGACGTGGGCTGCAAGACCGTTGCCAAC 1214547
Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACAT 2035753
| |||||||||||||| |||||||| ||||| ||||| || |||||
Sbjct 1214548 ATGATCAAGGGCAAGTCCCCCGAGGAGATCCGAAAGACGTTCAACAT 1214594
>seq5
Length=1316942
Score = 122 bits (134), Expect = 1e-21
Identities = 183/260 (70%), Gaps = 0/260 (0%)
Strand=Plus/Minus
Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599
||||||||| || || || |||| ||| ||||| ||||||||||| | | ||||||||
Sbjct 714086 CTGGTCGACGTATCGAGCAGTGTTGTTGAAGACACGGAGCATGGGAATGACACCGTTGGA 714027
Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659
|||||||| || || | ||| | ||| | ||| || | ||| ||| | ||
Sbjct 714026 GGTACCGTTGGTACCGGCAATGTAAGAGCCAGTGGCACGGATACGGTGAGCGTTGAGACC 713967
Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719
||| ||||| ||| ||||||||| | || ||| | || || || || ||||| |||||
Sbjct 713966 GATACCGCCAGCCATCTTGGAGATCATGGCACACGTCTTGAGAGTGTCATAGATACCCTC 713907
Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779
||| || |||||||||| | ||| ||||| || || || || | | || ||
Sbjct 713906 GATGCTATCCTCCTTCATGTCAACCAGGAAGCAGGAAGACAGCTGGGGCTGAGGGGTACC 713847
Query 2073780 GGCATTGAAGAGCGTGGGCG 2073799
|| ||||| || |||||||
Sbjct 713846 AGCGTTGAAAAGGGTGGGCG 713827
Score = 98.7 bits (108), Expect = 2e-14
Identities = 77/92 (84%), Gaps = 0/92 (0%)
Strand=Plus/Minus
Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530
|||||||||||| |||||||||||||| |||||||||||| |||| || || ||| | |
Sbjct 4923 GTACTTGGTGACCGCCTTGGTACCCTCAGAGACGGCGTGCTTGGCAAGCTCACCGGGGAG 4864
Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGG 1485562
||| ||||| |||| ||||| ||||| ||||
Sbjct 4863 GATGAGGCGGACGGAAGTCTGAATCTCTCGGG 4832
Score = 89.7 bits (98), Expect = 8e-12
Identities = 282/440 (64%), Gaps = 16/440 (4%)
Strand=Plus/Minus
Query 2071581 GACCTCGGTGCACAGGTTGGCCGACATCG--TGGTGCCCAGGTTCTGCTGGTTGCTGGTC 2071638
|| ||| ||||| ||||||| | || ||||||||||||||| ||||||||| |
Sbjct 714518 GATCTCAGTGCAGAGGTTGGAG--CTGCGGATGGTGCCCAGGTTCTTCTGGTTGCTCTTG 714461
Query 2071639 AGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCGTGACG 2071698
||||| |||||||||| ||||||| |||| || ||||| | || ||| || |
Sbjct 714460 CGGTTGCATGCGTCCTTGTACAGCATGAAGGGGTTGCCGGTCTCAGTTTGAGCCTCGAGG 714401
Query 2071699 ATGGCCGACCAAATTTGGCGCGCGGGCACCGAGGTCCTCGCGCGGCCCTNNNNNNNNNNN 2071758
||||| |||| | | | || || |||| | ||| ||||
Sbjct 714400 ATGGCGTACCACAACTTCTGAGCCTTCAT---GGTCTT---GCGACCCTTGCCAAGCTTC 714347
Query 2071759 NNNNNNN------AGAGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGGCCGGGCGCC 2071812
| | ||| || || | |||||| ||| ||| ||||| || |
Sbjct 714346 TCGTACTTCTCGTATAAGGCCTCGAACTCCTCGCCGTAGCAGTCGGCAAGGCCAGGGCAC 714287
Query 2071813 TCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATAAACAGGTCG 2071872
||| ||||| | || | ||| |||||| || | || || ||| || || ||
Sbjct 714286 TCGTTGGGGCACATCAGAGTCCAATCGCCGTTCTTCTCAACCCGCTTCATGAAGAGATCA 714227
Query 2071873 CACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTT 2071932
|||| ||| | || |||||||| || ||| ||| |||||||||||||||||
Sbjct 714226 GGGATCCAAAGGGCTAGGAAAAGATCGCGGGCGCGGACCTCTTCCTTGCCGTGGTTCTTG 714167
Query 2071933 TTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCG 2071992
|||||| || | |||| || || |||||||| ||||| |||||| ||| || ||
Sbjct 714166 CGCAGGTCCAGGAACTCGAAGACATCCGCGTGCCAGGGCTCGAGGTAGATGGCGAAAGCA 714107
Query 2071993 CCCTTGCGCTTGCCGCCGCC 2072012
||| |||||| ||| ||
Sbjct 714106 CCCGGTCGCTTGTTGCCACC 714087
>seq1
Length=2087327
Score = 114 bits (126), Expect = 2e-19
Identities = 173/246 (70%), Gaps = 0/246 (0%)
Strand=Plus/Plus
Query 2019195 CTGCCGCCCGGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCG 2019254
|| || ||||||||||| ||| ||||||| ||||| ||||||||| || | || || |
Sbjct 1570214 CTACCTCCCGGCCGCCAAAAGCTGATCATTCTCGACGAGGCCGACAGCATGACATCTGGC 1570273
Query 2019255 GCCCAGCAGGCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTG 2019314
|||||||| ||||||||| || ||||| | || ||||||| || | ||||| |
Sbjct 1570274 GCCCAGCAAGCCCTCCGACGAACGATGGAGATCTATTCCAACACCACCAGATTTGCATTC 1570333
Query 2019315 GCCTGCAACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGC 2019374
|||||||| |||| | |||| || |||| ||| | |||||||| | ||
Sbjct 1570334 GCCTGCAATCAGTCGAACAAAATCATTGAGCCCCTGCAGTCGAGATGCGCCATTCTACGA 1570393
Query 2019375 TTTGCGCGCCTCACCGACGCCCAGATCGCCGCGCGTCTGCGCGAGATTATCGACGCCGAA 2019434
| ||| || ||||||||||| ||| |||| || | || ||||| || |||
Sbjct 1570394 TATGCCAAGCTGACCGACGCCCAAGTCGTGAAGCGTTTGATGCAAATCATCGAGGCAGAA 1570453
Query 2019435 AAGGTC 2019440
||||||
Sbjct 1570454 AAGGTC 1570459
>seq2475
Length=697
Score = 100 bits (110), Expect = 5e-15
Identities = 168/243 (69%), Gaps = 0/243 (0%)
Strand=Plus/Minus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
||||||| ||||| ||||||||||||||||||||||| ||| | |||||||| || | |
Sbjct 488 TGTACTTTGTGACAGCCTTGGTACCCTCTGAGACGGCATGCTTTGCCAGTTCACCAGGAA 429
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
| || || ||||| ||||| || || || | || || || ||||| |
Sbjct 428 GCAGAAGACGGACGGCAGTCTGAATTTCTCGAGAAGTGAGGGTCTTCGTGTTGTTGTAGG 369
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
|| || ||||||| ||| |||| || |||| || || |||||||| ||||
Sbjct 368 AAGCGAGCTTAGCGGCCTCAGTGGCGATCCGCTCGAACAGATCAGCCACAAACGAATTCA 309
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709
| || ||||| ||| ||||| || ||| || || || ||||| || ||||| |
Sbjct 308 TAATGCTCATCGCCTTGGATGAGATACCGGTGTCCGGATGGACTTGCTTCAGGACCTTAT 249
Query 1485710 AAA 1485712
|||
Sbjct 248 AAA 246
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7915900363553067
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |