Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12-
21] 3,253 sequences; 60,403,714 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq1388 132 4e-26
seq3070 96.9 3e-15
seq8 96.9 3e-15
>seq1388
Length=1638
Score = 132 bits (146), Expect = 4e-26
Identities = 161/217 (74%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
||| ||||| | || || ||||| || || || ||||| || || | || || ||
Sbjct 1315 ACGGAGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCC 1374
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
|| ||||| || |||||||| | || | | |||||| ||||| |||||||| || ||
Sbjct 1375 GTCTTCGAGCTGCTTGCCAGCGAAGATAAGACGTTGCTGGTCCGGGGGAATACCTTCCTT 1434
Query 29691 GTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749
||| || | | || || |||||| | || | ||||| ||| || ||||| ||||| |
Sbjct 1435 GTCCTGGA-TCTTGGTCTTGACATTCTCGATGGTGTCGGAAGACTCCACTTCGAGAGTAA 1493
Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|||| ||||| ||||||||||||||||| ||||||||
Sbjct 1494 TAGTCTTGCCTGTTAAGGTTTTAACAAAGATCTGCAT 1530
Score = 131 bits (144), Expect = 1e-25
Identities = 168/229 (73%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
|| || | ||| || || || | ||| | |||||||| || |||||||| || || | |
Sbjct 530 CCACCACGCAAGCGAAGTACGAGATGCAAAGTGGATTCCTTCTGAATGTTGTAGTCAGAA 589
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| |||||| ||| |||||||| || ||||| | || | | |||||||||||| ||
Sbjct 590 AGGGTGCGGCCATCCTCGAGTTGCTTTCCAGCGAAGATAAGACGTTGCTGATCCGGGGGG 649
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738
||||| || |||||||| ||| || || || || | || | || ||||| ||| ||
Sbjct 650 ATACCTTCCTTGTCTTG-AATCTTAGTCTTCACGTTCTCGATGGTATCAGAGGATTCGAC 708
Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787
||||||||| || || || ||||| | || || ||||| |||||||||
Sbjct 709 TTCAAGAGTAATGGTCTTTCCAGTAAGAGTCTTGACAAAAATCTGCATT 757
Score = 125 bits (138), Expect = 6e-24
Identities = 160/218 (73%), Gaps = 2/218 (1%)
Strand=Plus/Plus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
||| ||||| | || || ||||| || || || || || || || | || ||||||
Sbjct 1087 ACGGAGCACAAGGTGCAGGGTGGACTCCTTCTGGATATTGTAGTCGGAAAGAGTGCGACC 1146
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
|| ||||| || |||||||| | || | || |||||| ||||| |||||||| || ||
Sbjct 1147 GTCTTCGAGCTGCTTGCCAGCGAAAATGAGTCGTTGCTGGTCCGGGGGAATACCTTCCTT 1206
Query 29691 GTCTTGTAATTTTTGTTTGACAGTT-TCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749
||| || |||||| || | | ||| || | |||||| || || ||||||||||| |
Sbjct 1207 GTCCTG-AATTTTGGTCTTAACGTTCTCGATAGTGTCGGAGGACTCAACTTCAAGAGTGA 1265
Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787
| || || || |||||||| || || || |||||||||
Sbjct 1266 TGGTCTTTCCGGTTAAGGTCTTGACGAAAATCTGCATT 1303
Score = 116 bits (128), Expect = 3e-21
Identities = 158/218 (72%), Gaps = 2/218 (1%)
Strand=Plus/Plus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
||||||||| | |||||| || ||||| ||||| ||||| || || | | |||||||
Sbjct 769 ACGCAGCACGAGATGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGACAGGGTGCGACC 828
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
|| || ||||| || ||||| | || | | ||||| ||||| || || || || ||
Sbjct 829 GTCCTCAAGTTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCTTCCTT 888
Query 29691 GTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749
|| || ||| || || || || | || | |||||| || || ||||||||||| |
Sbjct 889 ATCCTG-AATCTTAGTCTTCACGTTCTCGATAGTGTCGGAGGACTCAACTTCAAGAGTGA 947
Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787
| || || || |||||||| || || || |||||||||
Sbjct 948 TGGTCTTTCCGGTTAAGGTCTTGACGAAAATCTGCATT 985
>seq3070
Length=537
Score = 96.9 bits (106), Expect = 3e-15
Identities = 157/221 (71%), Gaps = 4/221 (2%)
Strand=Plus/Minus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
||| ||||| | ||| || || || || || |||||||| || || | | |||||
Sbjct 240 ACGGAGCACAAGATGTAGAGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGGTC 181
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
||| || ||||| || || ||| | || | | ||||||||||| ||||| || || ||
Sbjct 180 ATCCTCCAGTTGCTTTCCCGCAAAGATGAGGCGCTGCTGATCCGGAGGAATTCCTTCCTT 121
Query 29691 GTCTTGTAATTTTTGT-TTGACAGTTTCT-ACAGTGTCAGAAAGTTCTACTTCAAGAGTT 29748
||| || ||| || || || ||| || || | | || || |||||||| |||||
Sbjct 120 GTCCTG-AATCTTGGTCTTCACA-TTGCTGATGCTATCGGATGACTCTACTTCGAGAGTG 63
Query 29749 ATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789
||||| || || |||| ||||| || || |||||||| ||
Sbjct 62 ATAGTCTTTCCGGTTAGCGTTTTGACGAAGATCTGCATCTT 22
>seq8
Length=1068389
Score = 96.9 bits (106), Expect = 3e-15
Identities = 136/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 29584 TGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGT 29643
|| || || || || || |||||||| || || | | |||||| ||| || || ||
Sbjct 631584 TGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGC 631525
Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703
||||||||| | ||||| | ||||| ||||| ||||||||||| || || || | ||
Sbjct 631524 TTGCCAGCAAAGATCAAGCGCTGCTGGTCCGGGGGAATACCCTCCTTATCCTGGATCTTC 631465
Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763
|||||| | || | |||||||||| || || || || || || || ||||| ||
Sbjct 631464 GACTTGACATTGTCGATAGTGTCAGAAGACTCCACCTCGAGGGTGATGGTCTTGCCGGTG 631405
Query 29764 AAGGTTTTAAC 29774
| ||| || ||
Sbjct 631404 AGGGTCTTGAC 631394
Score = 89.7 bits (98), Expect = 4e-13
Identities = 151/216 (70%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631
|| || |||| || || || || ||||| || ||||| || || | | ||| ||| |
Sbjct 631824 CGGAGAACCAGGTGTAGAGTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTTCGACCA 631765
Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691
|| || || || || || || | || | || ||||||||||| ||||| ||||| |||
Sbjct 631764 TCCTCAAGCTGCTTTCCGGCGAAGATGAGTCGCTGCTGATCCGGGGGAATGCCCTCCTTG 631705
Query 29692 TCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750
|| || ||| || | ||||| | || | || ||||| || || || || || ||
Sbjct 631704 TCCTG-AATCTTCGACTTGACGTTGTCGATGGTATCAGATGACTCCACCTCGAGGGTGAT 631646
Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
||| || || || | ||| || ||||| ||||||||
Sbjct 631645 AGTCTTACCGGTGAGGGTCTTGACAAAGATCTGCAT 631610
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385203927623673
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |