Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12- 21] 3,253 sequences; 60,403,714 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq1388 132 4e-26 seq3070 96.9 3e-15 seq8 96.9 3e-15 >seq1388 Length=1638 Score = 132 bits (146), Expect = 4e-26 Identities = 161/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| ||||| | || || ||||| || || || ||||| || || | || || || Sbjct 1315 ACGGAGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCC 1374 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || ||||| || |||||||| | || | | |||||| ||||| |||||||| || || Sbjct 1375 GTCTTCGAGCTGCTTGCCAGCGAAGATAAGACGTTGCTGGTCCGGGGGAATACCTTCCTT 1434 Query 29691 GTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||| || | | || || |||||| | || | ||||| ||| || ||||| ||||| | Sbjct 1435 GTCCTGGA-TCTTGGTCTTGACATTCTCGATGGTGTCGGAAGACTCCACTTCGAGAGTAA 1493 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||| ||||| ||||||||||||||||| |||||||| Sbjct 1494 TAGTCTTGCCTGTTAAGGTTTTAACAAAGATCTGCAT 1530 Score = 131 bits (144), Expect = 1e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | ||| || || || | ||| | |||||||| || |||||||| || || | | Sbjct 530 CCACCACGCAAGCGAAGTACGAGATGCAAAGTGGATTCCTTCTGAATGTTGTAGTCAGAA 589 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| |||||||| || ||||| | || | | |||||||||||| || Sbjct 590 AGGGTGCGGCCATCCTCGAGTTGCTTTCCAGCGAAGATAAGACGTTGCTGATCCGGGGGG 649 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||||| || |||||||| ||| || || || || | || | || ||||| ||| || Sbjct 650 ATACCTTCCTTGTCTTG-AATCTTAGTCTTCACGTTCTCGATGGTATCAGAGGATTCGAC 708 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||||||||| || || || ||||| | || || ||||| ||||||||| Sbjct 709 TTCAAGAGTAATGGTCTTTCCAGTAAGAGTCTTGACAAAAATCTGCATT 757 Score = 125 bits (138), Expect = 6e-24 Identities = 160/218 (73%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| ||||| | || || ||||| || || || || || || || | || |||||| Sbjct 1087 ACGGAGCACAAGGTGCAGGGTGGACTCCTTCTGGATATTGTAGTCGGAAAGAGTGCGACC 1146 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || ||||| || |||||||| | || | || |||||| ||||| |||||||| || || Sbjct 1147 GTCTTCGAGCTGCTTGCCAGCGAAAATGAGTCGTTGCTGGTCCGGGGGAATACCTTCCTT 1206 Query 29691 GTCTTGTAATTTTTGTTTGACAGTT-TCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||| || |||||| || | | ||| || | |||||| || || ||||||||||| | Sbjct 1207 GTCCTG-AATTTTGGTCTTAACGTTCTCGATAGTGTCGGAGGACTCAACTTCAAGAGTGA 1265 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 | || || || |||||||| || || || ||||||||| Sbjct 1266 TGGTCTTTCCGGTTAAGGTCTTGACGAAAATCTGCATT 1303 Score = 116 bits (128), Expect = 3e-21 Identities = 158/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||||||||| | |||||| || ||||| ||||| ||||| || || | | ||||||| Sbjct 769 ACGCAGCACGAGATGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGACAGGGTGCGACC 828 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || ||||| || ||||| | || | | ||||| ||||| || || || || || Sbjct 829 GTCCTCAAGTTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCTTCCTT 888 Query 29691 GTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 || || ||| || || || || | || | |||||| || || ||||||||||| | Sbjct 889 ATCCTG-AATCTTAGTCTTCACGTTCTCGATAGTGTCGGAGGACTCAACTTCAAGAGTGA 947 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 | || || || |||||||| || || || ||||||||| Sbjct 948 TGGTCTTTCCGGTTAAGGTCTTGACGAAAATCTGCATT 985 >seq3070 Length=537 Score = 96.9 bits (106), Expect = 3e-15 Identities = 157/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| ||||| | ||| || || || || || |||||||| || || | | ||||| Sbjct 240 ACGGAGCACAAGATGTAGAGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGGTC 181 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || ||||| || || ||| | || | | ||||||||||| ||||| || || || Sbjct 180 ATCCTCCAGTTGCTTTCCCGCAAAGATGAGGCGCTGCTGATCCGGAGGAATTCCTTCCTT 121 Query 29691 GTCTTGTAATTTTTGT-TTGACAGTTTCT-ACAGTGTCAGAAAGTTCTACTTCAAGAGTT 29748 ||| || ||| || || || ||| || || | | || || |||||||| ||||| Sbjct 120 GTCCTG-AATCTTGGTCTTCACA-TTGCTGATGCTATCGGATGACTCTACTTCGAGAGTG 63 Query 29749 ATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 ||||| || || |||| ||||| || || |||||||| || Sbjct 62 ATAGTCTTTCCGGTTAGCGTTTTGACGAAGATCTGCATCTT 22 >seq8 Length=1068389 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 29584 TGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGT 29643 || || || || || || |||||||| || || | | |||||| ||| || || || Sbjct 631584 TGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGC 631525 Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 ||||||||| | ||||| | ||||| ||||| ||||||||||| || || || | || Sbjct 631524 TTGCCAGCAAAGATCAAGCGCTGCTGGTCCGGGGGAATACCCTCCTTATCCTGGATCTTC 631465 Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763 |||||| | || | |||||||||| || || || || || || || ||||| || Sbjct 631464 GACTTGACATTGTCGATAGTGTCAGAAGACTCCACCTCGAGGGTGATGGTCTTGCCGGTG 631405 Query 29764 AAGGTTTTAAC 29774 | ||| || || Sbjct 631404 AGGGTCTTGAC 631394 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || |||| || || || || ||||| || ||||| || || | | ||| ||| | Sbjct 631824 CGGAGAACCAGGTGTAGAGTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTTCGACCA 631765 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || || || || | || | || ||||||||||| ||||| ||||| ||| Sbjct 631764 TCCTCAAGCTGCTTTCCGGCGAAGATGAGTCGCTGCTGATCCGGGGGAATGCCCTCCTTG 631705 Query 29692 TCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 || || ||| || | ||||| | || | || ||||| || || || || || || Sbjct 631704 TCCTG-AATCTTCGACTTGACGTTGTCGATGGTATCAGATGACTCCACCTCGAGGGTGAT 631646 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| || || || | ||| || ||||| |||||||| Sbjct 631645 AGTCTTACCGGTGAGGGTCTTGACAAAGATCTGCAT 631610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385203927623673