Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12-
21] 3,253 sequences; 60,403,714 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq1388 145 1e-29
seq3070 114 3e-20
seq8 114 3e-20
>seq1388
Length=1638
Score = 145 bits (160), Expect = 1e-29
Identities = 170/230 (74%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| || | ||| || || || | |||| ||| ||||| ||||| || || || ||||
Sbjct 528 TACCACCACGCAAGCGAAGTACGAGATGCAAAGTGGATTCCTTCTGAATGTTGTAGTCAG 587
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| || | | || || || ||||| |||||||| ||||| || | ||| ||||| || |
Sbjct 588 AAAGGGTGCGGCCATCCTCGAGTTGCTTTCCAGCGAAGATAAGACGTTGCTGATCCGGGG 647
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| || |||||||| ||||||||||| | || || || || || |||||| | ||| |
Sbjct 648 GGATACCTTCCTTGTCTTGAATCTTAGTCTTCACGTTCTCGATGGTATCAGAGGATTCGA 707
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811
|||| | ||| || ||||| || || | ||||| ||||| |||||||||
Sbjct 708 CTTCAAGAGTAATGGTCTTTCCAGTAAGAGTCTTGACAAAAATCTGCATT 757
Score = 132 bits (146), Expect = 9e-26
Identities = 159/216 (74%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654
||| || || | |||||| || || || ||||| || || || ||||| ||| | | ||
Sbjct 1315 ACGGAGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCC 1374
Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714
|||||| || || || ||||| ||||| || | ||| || || || || || ||||||||
Sbjct 1375 GTCTTCGAGCTGCTTGCCAGCGAAGATAAGACGTTGCTGGTCCGGGGGAATACCTTCCTT 1434
Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774
|| || ||||| | || ||||| || || || || || || ||||| | ||| ||
Sbjct 1435 GTCCTGGATCTTGGTCTTGACATTCTCGATGGTGTCGGAAGACTCCACTTCGAGAGTAAT 1494
Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
||||||||||| || || || ||||| ||||||||
Sbjct 1495 AGTCTTGCCTGTTAAGGTTTTAACAAAGATCTGCAT 1530
Score = 129 bits (142), Expect = 1e-24
Identities = 166/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642
||| || | || ||| || || | ||| |||||||| |||||||| || || ||||| ||
Sbjct 73 ACCACCACGCAGACGAAGCACAAGGTGAAGAGTAGACTCTTTCTGGATGTTGTAATCGGA 132
Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702
||| | | |||||| || || || || || || ||||| || | || || || || ||
Sbjct 133 AAGAGTGCGACCGTCCTCGAGCTGCTTACCGGCGAAGATGAGACGCTGCTGGTCCGGGGG 192
Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762
|| ||||||||||| |||||||| | || || || ||||| || || | ||| ||
Sbjct 193 GATGCCTTCCTTATCCTGAATCTTAGTCTTGACGTTCTCAATAGTGTCGGAGGATTCCAC 252
Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811
|| | ||| || ||||| || || | ||||| || || |||||||||
Sbjct 253 CTCAAGAGTAATGGTCTTTCCAGTAAGGGTCTTCACGAAAATCTGCATT 301
Score = 125 bits (138), Expect = 1e-23
Identities = 158/217 (73%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654
|||||| || | || ||||||||||| || || || || || ||||| || | | |||
Sbjct 769 ACGCAGCACGAGATGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGACAGGGTGCGACC 828
Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714
||| || ||||| || ||||| ||||| || | || || || || || || ||||||||
Sbjct 829 GTCCTCAAGTTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCTTCCTT 888
Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774
||| |||||||| | || || || || || || || | || ||||| | ||| ||
Sbjct 889 ATCCTGAATCTTAGTCTTCACGTTCTCGATAGTGTCGGAGGACTCAACTTCAAGAGTGAT 948
Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811
||||| || || || ||||| || || |||||||||
Sbjct 949 GGTCTTTCCGGTTAAGGTCTTGACGAAAATCTGCATT 985
>seq3070
Length=537
Score = 114 bits (126), Expect = 3e-20
Identities = 155/216 (72%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654
||| || || | || |||||||| || ||||| || || || || || ||| | | |
Sbjct 240 ACGGAGCACAAGATGTAGAGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGGTC 181
Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714
|| || ||||| ||||| |||||||| || | || ||||| ||||| |||||||||||
Sbjct 180 ATCCTCCAGTTGCTTTCCCGCAAAGATGAGGCGCTGCTGATCCGGAGGAATTCCTTCCTT 121
Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774
|| |||||||| | || ||||| || |||| | |||||||| | ||| ||
Sbjct 120 GTCCTGAATCTTGGTCTTCACATTGCTGATGCTATCGGATGACTCTACTTCGAGAGTGAT 61
Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
||||| || || | ||| || || || ||||||||
Sbjct 60 AGTCTTTCCGGTTAGCGTTTTGACGAAGATCTGCAT 25
>seq8
Length=1068389
Score = 114 bits (126), Expect = 3e-20
Identities = 155/216 (72%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654
||| || || | ||| || ||||| || ||||| || || ||||| || | | |||
Sbjct 632053 ACGGAGGACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACC 631994
Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714
|| || || || || ||||||||||| |||| || || || || || || || |||||
Sbjct 631993 ATCCTCCAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCGGGGGGAATGCCCTCCTT 631934
Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774
|| |||||||| | || ||||| || || ||||| | | || || || | ||| ||
Sbjct 631933 GTCCTGAATCTTCGACTTCACATTGTCGATGGTATCGCTGGACTCGACCTCAAGAGTGAT 631874
Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|||||| || |||| ||||| || || ||||||||
Sbjct 631873 CGTCTTTCCGGTCAGGGTCTTCACGAAGATCTGCAT 631838
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981786278362767
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |