Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12- 21] 3,253 sequences; 60,403,714 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq3070 118 7e-22 seq1388 114 8e-21 seq8 91.5 1e-13 seq19 87.8 1e-12 >seq3070 Length=537 Score = 118 bits (130), Expect = 7e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||| | ||||||||| ||| || || |||||||| ||||| Sbjct 252 ACCACCACGAAGACGGAGCACAAGATGTAGAGTAGACTCCTTCTGAATGTTGTAGTCGGA 193 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| || || |||| ||| ||||| ||||| || | ||||||||||| | || Sbjct 192 CAGAGTGCGGTCATCCTCCAGTTGCTTTCCCGCAAAGATGAGGCGCTGCTGATCCGGAGG 133 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAG-TCACGGTGTCGCTTGATTCCA 33700 | ||||| ||||| ||| || || | |||| | | | | | ||| ||| || | Sbjct 132 AATTCCTTCCTTGTCCTGAATCTT-GGTCTTCACATTGCTGATGCTATCGGATGACTCTA 74 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| || || || |||| |||||| || ||||||||||| Sbjct 73 CTTCGAGAGTGATAGTCTTTCCGGTTAGCGTTTTGACGAAGATCTGCAT 25 >seq1388 Length=1638 Score = 114 bits (126), Expect = 8e-21 Identities = 172/241 (71%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || ||||| | | ||| | ||| | ||| ||||| |||||| || ||| Sbjct 290 AAAATCTGCATTCCACCACGTAGACGGAGCACAAGATGAAGAGTAGACTCTTTCTGGATG 349 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 |||||||||||||| ||||| |||| || | || || || || || || | ||| ||| Sbjct 350 TTGTAATCGGAGAGGGTGCGACCGTCCTCAAGCTGCTTACCAGCGAAGATGAGACGTTGC 409 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC 33689 || || | || | |||||| ||||| |||||| || | |||| || | ||| || Sbjct 410 TGGTCCGGAGGAATACCTTCCTTGTCCTGAATTTT-AGTCTTCACATTCTCAATGGTATC 468 Query 33690 GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||||||| |||| |||||||| ||||| || | ||||| || || || ||||| Sbjct 469 CGAGGATTCCACTTCAAGGGTGATCGTCTTACCAGTCAGAGTTTTCACGAATATTTGCAT 528 Query 33750 A 33750 | Sbjct 529 A 529 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || ||| | ||| | || ||||| |||||| || |||||||||||||| Sbjct 73 ACCACCACGCAGACGAAGCACAAGGTGAAGAGTAGACTCTTTCTGGATGTTGTAATCGGA 132 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| |||| || | || || ||||| || || | ||||||||| || | || Sbjct 133 AAGAGTGCGACCGTCCTCGAGCTGCTTACCGGCGAAGATGAGACGCTGCTGGTCCGGGGG 192 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| || || ||| || || | || | || | |||||| ||||||| Sbjct 193 GATGCCTTCCTTATCCTGAATCTT-AGTCTTGACGTTCTCAATAGTGTCGGAGGATTCCA 251 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | |||| || || || || || || | || || || || |||||||| Sbjct 252 CCTCAAGAGTAATGGTCTTTCCAGTAAGGGTCTTCACGAAAATCTGCAT 300 Score = 91.5 bits (100), Expect = 1e-13 Identities = 167/241 (69%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || ||||| | | ||| | ||| | || || ||| ||| || || ||| Sbjct 1292 AAAATCTGCATTCCACCGCGGAGACGGAGCACAAGGTGCAGGGTGGACTCCTTCTGGATG 1351 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 ||||| || || || || || |||| || | || || || || || || | ||| ||| Sbjct 1352 TTGTAGTCAGAAAGAGTACGGCCGTCTTCGAGCTGCTTGCCAGCGAAGATAAGACGTTGC 1411 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC 33689 || || | || | |||||| ||||| || || || | |||| || | |||||| Sbjct 1412 TGGTCCGGGGGAATACCTTCCTTGTCCTGGATCTTG-GTCTTGACATTCTCGATGGTGTC 1470 Query 33690 GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || ||||| || | || || || || |||||||| ||||| |||||||||||||| Sbjct 1471 GGAAGACTCCACTTCGAGAGTAATAGTCTTGCCTGTTAAGGTTTTAACAAAGATCTGCAT 1530 Query 33750 A 33750 | Sbjct 1531 A 1531 >seq8 Length=1068389 Score = 91.5 bits (100), Expect = 1e-13 Identities = 138/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || |||||||||||| || ||||| | || |||| || || || ||||| Sbjct 632029 CTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCATCCTCCAGCTGCTTACCAGCAAA 631970 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 || | |||||||| || | || | || || ||||| ||| ||| |||| ||| Sbjct 631969 GATAAGTCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATCTTCGACTTCA-CAT 631911 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 ||| | ||| ||||| || || || |||| |||||||| || || || | || || | Sbjct 631910 TGTCGATGGTATCGCTGGACTCGACCTCAAGAGTGATCGTCTTTCCGGTCAGGGTCTTCA 631851 Query 33737 CAAAGATCTGCATA 33750 | |||||||||||| Sbjct 631850 CGAAGATCTGCATA 631837 Score = 89.7 bits (98), Expect = 3e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||| |||||||| |||||| || |||||||| || || || || || | || || Sbjct 631818 ACCAGGTGTAGAGTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTTCGACCATCCTCA 631759 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | || |||||||| || || | ||||||||||| | || | || || ||||| | Sbjct 631758 AGCTGCTTTCCGGCGAAGATGAGTCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGA 631699 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || ||| | | || | ||| | ||| || ||| ||||| || | ||||| || || Sbjct 631698 ATCTTC-GACTTGACGTTGTCGATGGTATCAGATGACTCCACCTCGAGGGTGATAGTCTT 631640 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 ||| || | || || ||||||||||||||| Sbjct 631639 ACCGGTGAGGGTCTTGACAAAGATCTGCATA 631609 >seq19 Length=502728 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | | || | |||||| || ||||||||||| || || |||||||| ||| Sbjct 172572 CACCACCACGGAGGCGGAGCACCAAGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGC 172631 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 || ||||| | || || | || || || ||||| || | |||||||| || | | Sbjct 172632 TCAGAGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGG 172691 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | || || ||||| || || | | || | ||| | ||||||| || ||| Sbjct 172692 GGATGCCCTCCTTGTCCTGGATCTT-GGACTTGACGTTGTCGATGGTGTCGGAAGACTCC 172750 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || |||| |||||||| || || || | || || || ||||||||||| Sbjct 172751 ACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 172800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328690968221760