Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12-
21] 3,253 sequences; 60,403,714 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq3070 118 7e-22
seq1388 114 8e-21
seq8 91.5 1e-13
seq19 87.8 1e-12
>seq3070
Length=537
Score = 118 bits (130), Expect = 7e-22
Identities = 165/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| | | ||| | ||| | ||||||||| ||| || || |||||||| |||||
Sbjct 252 ACCACCACGAAGACGGAGCACAAGATGTAGAGTAGACTCCTTCTGAATGTTGTAGTCGGA 193
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
|| ||||| || || |||| ||| ||||| ||||| || | ||||||||||| | ||
Sbjct 192 CAGAGTGCGGTCATCCTCCAGTTGCTTTCCCGCAAAGATGAGGCGCTGCTGATCCGGAGG 133
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAG-TCACGGTGTCGCTTGATTCCA 33700
| ||||| ||||| ||| || || | |||| | | | | | ||| ||| || |
Sbjct 132 AATTCCTTCCTTGTCCTGAATCTT-GGTCTTCACATTGCTGATGCTATCGGATGACTCTA 74
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
| || | ||||| || || || |||| |||||| || |||||||||||
Sbjct 73 CTTCGAGAGTGATAGTCTTTCCGGTTAGCGTTTTGACGAAGATCTGCAT 25
>seq1388
Length=1638
Score = 114 bits (126), Expect = 8e-21
Identities = 172/241 (71%), Gaps = 4/241 (2%)
Strand=Plus/Plus
Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570
|||||| || ||||| | | ||| | ||| | ||| ||||| |||||| || |||
Sbjct 290 AAAATCTGCATTCCACCACGTAGACGGAGCACAAGATGAAGAGTAGACTCTTTCTGGATG 349
Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630
|||||||||||||| ||||| |||| || | || || || || || || | ||| |||
Sbjct 350 TTGTAATCGGAGAGGGTGCGACCGTCCTCAAGCTGCTTACCAGCGAAGATGAGACGTTGC 409
Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC 33689
|| || | || | |||||| ||||| |||||| || | |||| || | ||| ||
Sbjct 410 TGGTCCGGAGGAATACCTTCCTTGTCCTGAATTTT-AGTCTTCACATTCTCAATGGTATC 468
Query 33690 GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|||||||| |||| |||||||| ||||| || | ||||| || || || |||||
Sbjct 469 CGAGGATTCCACTTCAAGGGTGATCGTCTTACCAGTCAGAGTTTTCACGAATATTTGCAT 528
Query 33750 A 33750
|
Sbjct 529 A 529
Score = 91.5 bits (100), Expect = 1e-13
Identities = 159/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| | || ||| | ||| | || ||||| |||||| || ||||||||||||||
Sbjct 73 ACCACCACGCAGACGAAGCACAAGGTGAAGAGTAGACTCTTTCTGGATGTTGTAATCGGA 132
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
|| ||||| |||| || | || || ||||| || || | ||||||||| || | ||
Sbjct 133 AAGAGTGCGACCGTCCTCGAGCTGCTTACCGGCGAAGATGAGACGCTGCTGGTCCGGGGG 192
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| ||||| || || ||| || || | || | || | |||||| |||||||
Sbjct 193 GATGCCTTCCTTATCCTGAATCTT-AGTCTTGACGTTCTCAATAGTGTCGGAGGATTCCA 251
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
| |||| || || || || || || | || || || || ||||||||
Sbjct 252 CCTCAAGAGTAATGGTCTTTCCAGTAAGGGTCTTCACGAAAATCTGCAT 300
Score = 91.5 bits (100), Expect = 1e-13
Identities = 167/241 (69%), Gaps = 4/241 (2%)
Strand=Plus/Plus
Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570
|||||| || ||||| | | ||| | ||| | || || ||| ||| || || |||
Sbjct 1292 AAAATCTGCATTCCACCGCGGAGACGGAGCACAAGGTGCAGGGTGGACTCCTTCTGGATG 1351
Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630
||||| || || || || || |||| || | || || || || || || | ||| |||
Sbjct 1352 TTGTAGTCAGAAAGAGTACGGCCGTCTTCGAGCTGCTTGCCAGCGAAGATAAGACGTTGC 1411
Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC 33689
|| || | || | |||||| ||||| || || || | |||| || | ||||||
Sbjct 1412 TGGTCCGGGGGAATACCTTCCTTGTCCTGGATCTTG-GTCTTGACATTCTCGATGGTGTC 1470
Query 33690 GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
| || ||||| || | || || || || |||||||| ||||| ||||||||||||||
Sbjct 1471 GGAAGACTCCACTTCGAGAGTAATAGTCTTGCCTGTTAAGGTTTTAACAAAGATCTGCAT 1530
Query 33750 A 33750
|
Sbjct 1531 A 1531
>seq8
Length=1068389
Score = 91.5 bits (100), Expect = 1e-13
Identities = 138/194 (71%), Gaps = 2/194 (1%)
Strand=Plus/Minus
Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617
||| || || |||||||||||| || ||||| | || |||| || || || |||||
Sbjct 632029 CTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCATCCTCCAGCTGCTTACCAGCAAA 631970
Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677
|| | |||||||| || | || | || || ||||| ||| ||| |||| |||
Sbjct 631969 GATAAGTCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATCTTCGACTTCA-CAT 631911
Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736
||| | ||| ||||| || || || |||| |||||||| || || || | || || |
Sbjct 631910 TGTCGATGGTATCGCTGGACTCGACCTCAAGAGTGATCGTCTTTCCGGTCAGGGTCTTCA 631851
Query 33737 CAAAGATCTGCATA 33750
| ||||||||||||
Sbjct 631850 CGAAGATCTGCATA 631837
Score = 89.7 bits (98), Expect = 3e-13
Identities = 148/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600
|||| |||||||| |||||| || |||||||| || || || || || | || ||
Sbjct 631818 ACCAGGTGTAGAGTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTTCGACCATCCTCA 631759
Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660
| || |||||||| || || | ||||||||||| | || | || || ||||| |
Sbjct 631758 AGCTGCTTTCCGGCGAAGATGAGTCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGA 631699
Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719
|| ||| | | || | ||| | ||| || ||| ||||| || | ||||| || ||
Sbjct 631698 ATCTTC-GACTTGACGTTGTCGATGGTATCAGATGACTCCACCTCGAGGGTGATAGTCTT 631640
Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
||| || | || || |||||||||||||||
Sbjct 631639 ACCGGTGAGGGTCTTGACAAAGATCTGCATA 631609
>seq19
Length=502728
Score = 87.8 bits (96), Expect = 1e-12
Identities = 159/230 (69%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580
||||||| | | || | |||||| || ||||||||||| || || |||||||| |||
Sbjct 172572 CACCACCACGGAGGCGGAGCACCAAGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGC 172631
Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640
|| ||||| | || || | || || || ||||| || | |||||||| || | |
Sbjct 172632 TCAGAGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGG 172691
Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699
| | || || ||||| || || | | || | ||| | ||||||| || |||
Sbjct 172692 GGATGCCCTCCTTGTCCTGGATCTT-GGACTTGACGTTGTCGATGGTGTCGGAAGACTCC 172750
Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| |||| |||||||| || || || | || || || |||||||||||
Sbjct 172751 ACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 172800
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328690968221760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |