Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12- 21] 3,253 sequences; 60,403,714 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq8 123 6e-23 seq1388 116 9e-21 seq3070 100 7e-16 >seq8 Length=1068389 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || ||||| || || || ||||| | || ||||| ||||| Sbjct 631613 CAGATCTTTGTCAAGACCCTCACCGGTAAGACTATCACCCTCGAGGTGGAGTCATCTGAT 631672 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| |||||||| || || || || ||| ||||| || Sbjct 631673 ACCATCGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGCATTCCCCCGGATCAGCAG 631732 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 |||| |||||||||||||||||| | || ||||| | || || | || |||||| || Sbjct 631733 CGACTCATCTTCGCCGGAAAGCAGCTTGAGGATGGTCGAACCCTGTCTGACTACAACATC 631792 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||||||||||||| ||||| ||| | ||||||| Sbjct 631793 CAGAAAGAGTCTACTCTACACCTGGTTCTCCGACTTCG 631830 Score = 100 bits (110), Expect = 7e-16 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||| | ||| ||||| ||||||||||||||||||| || ||||||| || || Sbjct 631830 CGAAGTCGGAGAACCAGGTGTAGAGTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTT 631771 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | ||||| || |||||||||||||||||||| || || || ||| Sbjct 631770 CGACCATCCTCAAGCTGCTTTCCGGCGAAGATGAGTCGCTGCTGA 631726 >seq1388 Length=1638 Score = 116 bits (128), Expect = 9e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || ||||| || || ||| | || |||||| || ||||| | || Sbjct 285 AAGACCCTTACTGGAAAGACCATTACTCTTGAGGTGGAATCCTCCGACACTATTGAGAAC 226 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||||| || || ||||| || |||||| || | || |||||| Sbjct 225 GTCAAGACTAAGATTCAGGATAAGGAAGGCATCCCCCCGGACCAGCAGCGTCTCATCTTC 166 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| | || || || | ||| | ||||||||||| |||||||||||||| Sbjct 165 GCCGGTAAGCAGCTCGAGGACGGTCGCACTCTTTCCGATTACAACATCCAGAAAGAGTCT 106 Query 206365 ACTCTTCACCTTGT 206378 |||||||||||||| Sbjct 105 ACTCTTCACCTTGT 92 Score = 111 bits (122), Expect = 4e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || || |||||||| | ||||||||| || || || | || Sbjct 513 AAAACTCTGACTGGTAAGACGATCACCCTTGAAGTGGAATCCTCGGATACCATTGAGAAT 454 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || ||||| || || ||||| ||| |||||| ||| | || |||||| Sbjct 453 GTGAAGACTAAAATTCAGGACAAGGAAGGTATTCCTCCGGACCAGCAACGTCTCATCTTC 394 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| | || || || | || | ||||||||||| |||||||||||||| Sbjct 393 GCTGGTAAGCAGCTTGAGGACGGTCGCACCCTCTCCGATTACAACATCCAGAAAGAGTCT 334 Query 206365 ACTCTTCACCTTGT 206378 |||||||| ||||| Sbjct 333 ACTCTTCATCTTGT 320 Score = 111 bits (122), Expect = 4e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| | ||||| || || || ||| | |||||||| ||| ||| Sbjct 1527 CAGATCTTTGTTAAAACCTTAACAGGCAAGACTATTACTCTCGAAGTGGAGTCTTCCGAC 1468 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || ||||| ||| |||||| ||| Sbjct 1467 ACCATCGAGAATGTCAAGACCAAGATCCAGGACAAGGAAGGTATTCCCCCGGACCAGCAA 1408 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | ||||||||||| || |||||| | ||||| || | ||| | | || |||||| || Sbjct 1407 CGTCTTATCTTCGCTGGCAAGCAGCTCGAAGACGGCCGTACTCTTTCTGACTACAACATC 1348 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || || |||||||| Sbjct 1347 CAGAAGGAGTCCACCCTGCACCTTGT 1322 Score = 87.8 bits (96), Expect = 4e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || || || ||||| || || ||| | ||||| ||| ||||| Sbjct 753 CAGATTTTTGTCAAGACTCTTACTGGAAAGACCATTACTCTTGAAGTCGAATCCTCTGAT 694 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||||||||| || ||||| || ||||| ||| Sbjct 693 ACCATCGAGAACGTGAAGACTAAGATTCAAGACAAGGAAGGTATCCCCCCGGATCAGCAA 634 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | ||||||||||| |||||||| | || ||||| | || | | || |||||| | Sbjct 633 CGTCTTATCTTCGCTGGAAAGCAACTCGAGGATGGCCGCACCCTTTCTGACTACAACATT 574 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| || || ||| | || || || Sbjct 573 CAGAAGGAATCCACTTTGCATCTCGT 548 >seq3070 Length=537 Score = 100 bits (110), Expect = 7e-16 Identities = 148/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||||||||| || ||||| || |||||| | ||||| || || || Sbjct 28 CAGATCTTCGTCAAAACGCTAACCGGAAAGACTATCACTCTCGAAGTAGAGTCATCCGAT 87 Query 206233 ACAGTCG--AATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTC 206290 | || ||| || ||| |||||||| || || ||||||||| ||||| | Sbjct 88 AGCATCAGCAAT--GTGAAGACCAAGATTCAGGACAAGGAAGGAATTCCTCCGGATCAGC 145 Query 206291 AAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACG 206350 | | || ||||| || |||||||| |||| |||| | ||| || |||| |||||| Sbjct 146 AGCGCCTCATCTTTGCGGGAAAGCAACTGGAGGATGACCGCACTCTGTCCGACTACAACA 205 Query 206351 TCCAGAAAGAGTCTACTCTTCACCTTGT 206378 | ||||| ||||||||||| || ||||| Sbjct 206 TTCAGAAGGAGTCTACTCTACATCTTGT 233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181771542817013