Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12- 21] 3,253 sequences; 60,403,714 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq5 152 7e-31 seq6 120 4e-21 >seq5 Length=1316942 Score = 152 bits (168), Expect = 7e-31 Identities = 216/301 (72%), Gaps = 2/301 (1%) Strand=Plus/Plus Query 259883 ACCTACGAGGCCATGTCGCAGCA-GTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGC 259941 |||||| | |||||| ||||| | |||| ||| || ||||||| || || || || Sbjct 713787 ACCTACAACCTCATGTC-CAGCAAGCTGTTTACCCATGCTTCGCCCACCCTTTTCAACGC 713845 Query 259942 CGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGAT 260001 || || || | || ||| || || ||||| ||| | |||||||||| ||| || Sbjct 713846 TGGTACCCCTCAGCCCCAGCTGTCTTCCTGCTTCCTGGTTGACATGAAGGAGGATAGCAT 713905 Query 260002 CGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCAT 260061 |||||| ||||||||||| |||||| ||| || | ||||||||| ||| ||||| || Sbjct 713906 CGAGGGTATCTATGACACTCTCAAGACGTGTGCCATGATCTCCAAGATGGCTGGCGGTAT 713965 Query 260062 CGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCA 260121 |||| | ||| ||| | || ||| | ||| | ||| | || || |||||||| Sbjct 713966 CGGTCTCAACGCTCACCGTATCCGTGCCACTGGCTCTTACATTGCCGGTACCAACGGTAC 714025 Query 260122 GTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCA 260181 |||||||| | | |||||||| || || || ||| |||| || || ||||||||||| Sbjct 714026 CTCCAACGGTGTCATTCCCATGCTCCGTGTCTTCAACAACACTGCTCGATACGTCGACCA 714085 Query 260182 G 260182 | Sbjct 714086 G 714086 Score = 93.3 bits (102), Expect = 6e-13 Identities = 100/130 (77%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 262097 TGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTACAAGGAC 262156 |||| ||||| ||| ||| || | |||||||||| |||| |||| | ||||||||| Sbjct 714390 TGGTACGCCATCCTCGAGGCTCAAACTGAGACCGGCAACCCCTTCATGCTGTACAAGGAC 714449 Query 262157 GCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCA-CGACAGAGGCCAACCTGTG 262215 || ||||| | ||||||||| ||||||||||||||| | ||| ||||||| || Sbjct 714450 GCATGCAACCGCAAGAGCAACCAGAAGAACCTGGGCACCATCCGCAG-CTCCAACCTCTG 714508 Query 262216 CACCGAGATC 262225 ||| |||||| Sbjct 714509 CACTGAGATC 714518 >seq6 Length=1299473 Score = 120 bits (132), Expect = 4e-21 Identities = 181/252 (72%), Gaps = 4/252 (2%) Strand=Plus/Minus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582 |||||| || |||||| |||||||| ||||| ||| |||| | ||||| || Sbjct 1188792 ATCATCACTGATGCCGTCACCATCGAGAAGGAGTTCCTCACCGAGGCTCTGCCCTGCGCC 1188733 Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642 || ||||||||||| | | |||||| ||||||||||| || || ||||| || | Sbjct 1188732 CTGCTCGGCATGAACTCTGAC-CTCATGAAGCAGTACATTGAGTTC-GTTGCCGATCGTC 1188675 Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702 | || | || |||||| || ||||| |||| | || ||||||| ||| | ||| Sbjct 1188674 TTCTTGTCGCTCTCGGCAACG-AGAAGGTCTACAAGTCGACCAACCCCTTCGACTTCATG 1188616 Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-GGCGAGTACGCC 1456761 ||| ||||| |||| |||||||||||||| |||||| || || || || ||| Sbjct 1188615 GAGAACATCTCCCTCGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGACTACCAG 1188556 Query 1456762 AAGGCCGGCGTC 1456773 |||||||||||| Sbjct 1188555 AAGGCCGGCGTC 1188544 Score = 107 bits (118), Expect = 3e-17 Identities = 211/304 (69%), Gaps = 15/304 (5%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| | |||||| || |||||||||||||| || ||||| || |||||| | || | Sbjct 1189455 GATCTGGCAGATGTAC-AAGAAGGCCGAGGCCTCTTTCTGGACTGCGGAGGAGATTGATC 1189397 Query 1455835 TCGGCGCCGACACGGTC--CAC---TGGGTGT--CGC-TGAGCGACGACGAGCGCCATTT 1455886 | | ||| | | || ||| ||| ||| ||| | |||||| | || Sbjct 1189396 T----GTCGA-AGGATCTTCACGATTGGAACAACCGCCTGACTGCCGACGAACAGTTCTT 1189342 Query 1455887 CATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGG 1455946 | || ||| || | ||||| || |||||| ||||||||||| ||||||||| | Sbjct 1189341 CGTCTCTCACATCTTGGCCTTCTT-CGCCGCATCTGATGGCATCGTCAACGAGAACCTCG 1189283 Query 1455947 CCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGA 1456006 | | || | |||||||| | || ||||| || | || ||||| ||||||| Sbjct 1189282 TTGAAAGATTCAGCGGCGAGGTCCAGATCCCTGAGGCTCGCTGCTTCTACGGCTTCCAGA 1189223 Query 1456007 TCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGG 1456066 || || || |||||||||||||| |||||||| || || || ||||| ||| |||||| Sbjct 1189222 TCATGATGGAGAACATCCACTCTGAGACCTACTCCCTACTCATTGACACTTACATCAAGG 1189163 Query 1456067 ACCC 1456070 | || Sbjct 1189162 AGCC 1189159 Score = 91.5 bits (100), Expect = 2e-12 Identities = 120/159 (75%), Gaps = 13/159 (8%) Strand=Plus/Minus Query 1456123 AAAAAGGCCGACTGGGCGATGAAGTGGATCAA---CAAGGAGGGCCTCGACACTTTGCCG 1456179 || ||||| |||||||| || ||||||| | |||||| |||| | ||||||| Sbjct 1189053 AAGAAGGCTGACTGGGCCATCCGGTGGATCCAGGACAAGGA----CTCGTC-CTTTGCCC 1188999 Query 1456180 AGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCT-CGG-GCAGTTTCTGCGC 1456236 |||| || || | |||||| || || ||||| ||||| ||| ||| || || || | Sbjct 1188998 AGCGCCTGGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGCTTC-- 1188941 Query 1456237 CATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 |||||| |||||||||||||| ||||||||||| || || Sbjct 1188940 CATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGCCT 1188902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177497442170986