Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ilyonectria_20destructans_20[genbank_20GCA_5F001913115.1_202016-12-
21] 3,253 sequences; 60,403,714 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq5 152 7e-31
seq6 120 4e-21
>seq5
Length=1316942
Score = 152 bits (168), Expect = 7e-31
Identities = 216/301 (72%), Gaps = 2/301 (1%)
Strand=Plus/Plus
Query 259883 ACCTACGAGGCCATGTCGCAGCA-GTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGC 259941
|||||| | |||||| ||||| | |||| ||| || ||||||| || || || ||
Sbjct 713787 ACCTACAACCTCATGTC-CAGCAAGCTGTTTACCCATGCTTCGCCCACCCTTTTCAACGC 713845
Query 259942 CGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGAT 260001
|| || || | || ||| || || ||||| ||| | |||||||||| ||| ||
Sbjct 713846 TGGTACCCCTCAGCCCCAGCTGTCTTCCTGCTTCCTGGTTGACATGAAGGAGGATAGCAT 713905
Query 260002 CGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCAT 260061
|||||| ||||||||||| |||||| ||| || | ||||||||| ||| ||||| ||
Sbjct 713906 CGAGGGTATCTATGACACTCTCAAGACGTGTGCCATGATCTCCAAGATGGCTGGCGGTAT 713965
Query 260062 CGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCA 260121
|||| | ||| ||| | || ||| | ||| | ||| | || || ||||||||
Sbjct 713966 CGGTCTCAACGCTCACCGTATCCGTGCCACTGGCTCTTACATTGCCGGTACCAACGGTAC 714025
Query 260122 GTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCA 260181
|||||||| | | |||||||| || || || ||| |||| || || |||||||||||
Sbjct 714026 CTCCAACGGTGTCATTCCCATGCTCCGTGTCTTCAACAACACTGCTCGATACGTCGACCA 714085
Query 260182 G 260182
|
Sbjct 714086 G 714086
Score = 93.3 bits (102), Expect = 6e-13
Identities = 100/130 (77%), Gaps = 2/130 (2%)
Strand=Plus/Plus
Query 262097 TGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTACAAGGAC 262156
|||| ||||| ||| ||| || | |||||||||| |||| |||| | |||||||||
Sbjct 714390 TGGTACGCCATCCTCGAGGCTCAAACTGAGACCGGCAACCCCTTCATGCTGTACAAGGAC 714449
Query 262157 GCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCA-CGACAGAGGCCAACCTGTG 262215
|| ||||| | ||||||||| ||||||||||||||| | ||| ||||||| ||
Sbjct 714450 GCATGCAACCGCAAGAGCAACCAGAAGAACCTGGGCACCATCCGCAG-CTCCAACCTCTG 714508
Query 262216 CACCGAGATC 262225
||| ||||||
Sbjct 714509 CACTGAGATC 714518
>seq6
Length=1299473
Score = 120 bits (132), Expect = 4e-21
Identities = 181/252 (72%), Gaps = 4/252 (2%)
Strand=Plus/Minus
Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582
|||||| || |||||| |||||||| ||||| ||| |||| | ||||| ||
Sbjct 1188792 ATCATCACTGATGCCGTCACCATCGAGAAGGAGTTCCTCACCGAGGCTCTGCCCTGCGCC 1188733
Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642
|| ||||||||||| | | |||||| ||||||||||| || || ||||| || |
Sbjct 1188732 CTGCTCGGCATGAACTCTGAC-CTCATGAAGCAGTACATTGAGTTC-GTTGCCGATCGTC 1188675
Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702
| || | || |||||| || ||||| |||| | || ||||||| ||| | |||
Sbjct 1188674 TTCTTGTCGCTCTCGGCAACG-AGAAGGTCTACAAGTCGACCAACCCCTTCGACTTCATG 1188616
Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-GGCGAGTACGCC 1456761
||| ||||| |||| |||||||||||||| |||||| || || || || |||
Sbjct 1188615 GAGAACATCTCCCTCGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGACTACCAG 1188556
Query 1456762 AAGGCCGGCGTC 1456773
||||||||||||
Sbjct 1188555 AAGGCCGGCGTC 1188544
Score = 107 bits (118), Expect = 3e-17
Identities = 211/304 (69%), Gaps = 15/304 (5%)
Strand=Plus/Minus
Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834
||| ||| | |||||| || |||||||||||||| || ||||| || |||||| | || |
Sbjct 1189455 GATCTGGCAGATGTAC-AAGAAGGCCGAGGCCTCTTTCTGGACTGCGGAGGAGATTGATC 1189397
Query 1455835 TCGGCGCCGACACGGTC--CAC---TGGGTGT--CGC-TGAGCGACGACGAGCGCCATTT 1455886
| | ||| | | || ||| ||| ||| ||| | |||||| | ||
Sbjct 1189396 T----GTCGA-AGGATCTTCACGATTGGAACAACCGCCTGACTGCCGACGAACAGTTCTT 1189342
Query 1455887 CATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGG 1455946
| || ||| || | ||||| || |||||| ||||||||||| ||||||||| |
Sbjct 1189341 CGTCTCTCACATCTTGGCCTTCTT-CGCCGCATCTGATGGCATCGTCAACGAGAACCTCG 1189283
Query 1455947 CCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGA 1456006
| | || | |||||||| | || ||||| || | || ||||| |||||||
Sbjct 1189282 TTGAAAGATTCAGCGGCGAGGTCCAGATCCCTGAGGCTCGCTGCTTCTACGGCTTCCAGA 1189223
Query 1456007 TCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGG 1456066
|| || || |||||||||||||| |||||||| || || || ||||| ||| ||||||
Sbjct 1189222 TCATGATGGAGAACATCCACTCTGAGACCTACTCCCTACTCATTGACACTTACATCAAGG 1189163
Query 1456067 ACCC 1456070
| ||
Sbjct 1189162 AGCC 1189159
Score = 91.5 bits (100), Expect = 2e-12
Identities = 120/159 (75%), Gaps = 13/159 (8%)
Strand=Plus/Minus
Query 1456123 AAAAAGGCCGACTGGGCGATGAAGTGGATCAA---CAAGGAGGGCCTCGACACTTTGCCG 1456179
|| ||||| |||||||| || ||||||| | |||||| |||| | |||||||
Sbjct 1189053 AAGAAGGCTGACTGGGCCATCCGGTGGATCCAGGACAAGGA----CTCGTC-CTTTGCCC 1188999
Query 1456180 AGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCT-CGG-GCAGTTTCTGCGC 1456236
|||| || || | |||||| || || ||||| ||||| ||| ||| || || || |
Sbjct 1188998 AGCGCCTGGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGCTTC-- 1188941
Query 1456237 CATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275
|||||| |||||||||||||| ||||||||||| || ||
Sbjct 1188940 CATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGCCT 1188902
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177497442170986
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |